FC932139

Overview
NameFC932139
Unique NameFC932139
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932139 vs. ExPASy Swiss-Prot
Match: HARB1_BOVIN (Putative nuclease HARBI1 OS=Bos taurus GN=HARBI1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.166e-14
Identity = 57/194 (29.38%), Postives = 96/194 (49.48%), Query Frame = 1
Query:  124 KYLQWPDDDA-LRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFIKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHL--TWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQ-KRRRLNYRICLWFSGHVV--CCII 687
            +++ +P D+A ++ +KDEF  ++GIP V+G +   HV I AP     +Y        N+K  +S+    V +  GA   V   WPGS+ D  VL++S+L  +   G+ K  W++G S + L  W++ P    H+  T  ++ +N        V +  F  L  R+ CL   +  L Y      S H++  CC++
Sbjct:  117 QFIHFPADEASVQALKDEFYGLAGIPGVIGVVDCMHVAIKAPNAEDLSYV-------NRKGLHSLNCLMVCDIRGALMTVETSWPGSLQDCVVLQQSSLSSQFEAGMHKESWLLGDSSFFLRTWLMTPL---HIPETPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDGSKGALQY--SPEKSSHIILACCVL 298          
BLAST of FC932139 vs. ExPASy Swiss-Prot
Match: HARB1_MOUSE (Putative nuclease HARBI1 OS=Mus musculus GN=Harbi1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.286e-14
Identity = 49/166 (29.52%), Postives = 81/166 (48.80%), Query Frame = 1
Query:  124 KYLQWP-DDDALRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFIKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCL 618
            +++ +P D+ A++ +KDEF  ++G+P V+G     HV I AP     +Y        N+K  +S+    V +  GA   V   WPGS+ D  VL++S+L  +   G+ K  W++G S + L  W+L P      T  ++ +N        V +     L  R+ CL
Sbjct:  117 QFIHFPVDEAAVQSLKDEFYGLAGMPGVIGVADCIHVAIKAPNAEDLSYV-------NRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQRSSLTSQFETGMPKDSWLLGDSSFFLRSWLLTPLPIPE-TAAEYRYNRAHSATHSVIERTLQTLCCRFRCL 274          

HSP 2 Score: 23.483 bits (49), Expect = 3.286e-14
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  657 VLGACCVLHNI 689
            ++ ACCVLHNI
Sbjct:  291 IILACCVLHNI 301          
BLAST of FC932139 vs. ExPASy Swiss-Prot
Match: HARB1_RAT (Putative nuclease HARBI1 OS=Rattus norvegicus GN=Harbi1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.302e-14
Identity = 56/194 (28.87%), Postives = 96/194 (49.48%), Query Frame = 1
Query:  124 KYLQWPDDDA-LRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFIKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHL--TWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQ-KRRRLNYRICLWFSGHVV--CCII 687
            +++ +P D+A ++ +KDEF  ++G+P V+G++   HV I AP     +Y        N+K  +S+    V +  GA   V   WPGS+ D  VL++S+L  +   G+ K  W++G S + L  W+L P    H+  T  ++ +N        V +     L  R+ CL   +  L Y      S H++  CC++
Sbjct:  117 QFIHFPADEAAIQSLKDEFYGLAGMPGVIGAVDCIHVAIKAPNAEDLSYV-------NRKGLHSLNCLVVCDIRGALMTVETSWPGSLQDCAVLQQSSLSSQFETGMPKDSWLLGDSSFFLHTWLLTPL---HIPETPAEYRYNRAHSATHSVIEKTLRTLCCRFRCLDGSKGALQY--SPEKSSHIILACCVL 298          
BLAST of FC932139 vs. ExPASy Swiss-Prot
Match: HARB1_HUMAN (Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.230e-14
Identity = 55/194 (28.35%), Postives = 96/194 (49.48%), Query Frame = 1
Query:  124 KYLQWPDDDA-LRKIKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFIKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKSALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHL--TWTQHAFNEKIGEIQRVSKDAFARLKGRWCCLQ-KRRRLNYRICLWFSGHVV--CCII 687
            +++++P D+A ++ +KDEF  ++G+P V+G +   HV I AP     +Y        N+K  +S+    V +  G    V   WPGS+ D  VL++S+L  +   G+ K  W++G S + L  W++ P    H+  T  ++ +N        V +  F  L  R+ CL   +  L Y      S H++  CC++
Sbjct:  117 QFIRFPADEASIQALKDEFYGLAGMPGVMGVVDCIHVAIKAPNAEDLSYV-------NRKGLHSLNCLMVCDIRGTLMTVETNWPGSLQDCAVLQQSSLSSQFEAGMHKDSWLLGDSSFFLRTWLMTPL---HIPETPAEYRYNMAHSATHSVIEKTFRTLCSRFRCLDGSKGALQY--SPEKSSHIILACCVL 298          
BLAST of FC932139 vs. ExPASy Swiss-Prot
Match: HARB1_DANRE (Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.034e-11
Identity = 47/170 (27.65%), Postives = 79/170 (46.47%), Query Frame = 1
Query:  121 PKYLQWPDDDALRK-IKDEFEVISGIPNVVGSMYTTHVPIIAPKISVAAYFIKRHTERNQKTSYSITVQGVVNPNGAFTDVCIGWPGSMPDDQVLEKS---ALYQRASGGLLKGVWIVGGSGYPLMDWVLVPYTQQHLTWTQHAFNEKIGEIQRVSKDAFARLKGRWCCL 618
            P+++ +  D+A ++  KDEF  I+GIPNV G +   H+ I AP    ++Y        N+K  +SI  Q V +  G        WPGS+ D  V ++S    L++          W++G + YPL  W++ P  Q   +   + +N        +    F  ++ R+ CL
Sbjct:  116 PEFIGFTRDEATKQQFKDEFYRIAGIPNVTGVVDCAHIAIKAPNADDSSYV-------NKKGFHSINCQLVCDARGLLLSAETHWPGSLTDRAVFKQSNVAKLFEEQEND--DEGWLLGDNRYPLKKWLMTP-VQSPESPADYRYNLAHTTTHEIVDRTFRAIQTRFRCL 275          

HSP 2 Score: 24.2534 bits (51), Expect = 1.034e-11
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  657 VLGACCVLHNI 689
            ++ ACCVLHNI
Sbjct:  292 IIQACCVLHNI 302          
The following BLAST results are available for this feature:
BLAST of FC932139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
HARB1_BOVIN2.166e-1429.38Putative nuclease HARBI1 OS=Bos taurus GN=HARBI1 P... [more]
HARB1_MOUSE3.286e-1429.52Putative nuclease HARBI1 OS=Mus musculus GN=Harbi1... [more]
HARB1_RAT6.302e-1428.87Putative nuclease HARBI1 OS=Rattus norvegicus GN=H... [more]
HARB1_HUMAN8.230e-1428.35Putative nuclease HARBI1 OS=Homo sapiens GN=HARBI1... [more]
HARB1_DANRE1.034e-1127.65Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 ... [more]
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Properties
Property NameValue
Genbank descriptionC34205A10EF PostHarveN Citrus clementina cDNA clone C34205A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932139 ID=FC932139; Name=FC932139; organism=Citrus clementina; type=EST; length=704bp
ATTTGGAGACTTGCTACAGGAGAGCCACTCAGACTTGTATCAAAGAGGTT
TGGTTTAGGGATATCGACTTGTCATAAATTGGTTCTTGAAGTTTGTACAG
CTATTAGAAGTGTGTTAATGCCCAAGTATTTACAATGGCCTGATGATGAT
GCTTTGAGGAAGATAAAAGATGAGTTTGAAGTTATATCTGGGATCCCGAA
TGTTGTTGGTTCAATGTATACTACTCATGTTCCGATTATAGCTCCAAAGA
TTAGTGTCGCTGCTTATTTCATTAAGCGGCATACAGAAAGGAATCAGAAG
ACTTCTTATTCTATCACGGTTCAGGGAGTTGTGAATCCGAATGGGGCATT
TACTGATGTGTGCATTGGATGGCCCGGTTCAATGCCTGACGACCAGGTGT
TAGAGAAGTCTGCTTTGTATCAAAGAGCAAGCGGGGGTCTTTTAAAGGGT
GTGTGGATCGTTGGAGGTTCAGGGTATCCGTTAATGGATTGGGTTTTGGT
GCCTTATACACAGCAGCATTTGACATGGACTCAGCATGCTTTTAATGAGA
AGATTGGAGAGATTCAAAGGGTTTCTAAAGATGCATTTGCTCGGTTGAAA
GGAAGATGGTGTTGTCTGCAGAAGAGACGGAGGTTAAACTACAGGATTTG
CCTGTGGTTCTCGGGGCATGTTGTGTGTTGCATAATATTGTGAGATGATG
AATG
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