FC932167

Overview
NameFC932167
Unique NameFC932167
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932167_ssr131 microsatellite FC932167_ssr131:131..142. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6635 contig Ccv1_Contig6635:243..935. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932167 vs. ExPASy Swiss-Prot
Match: CML48_ARATH (Probable calcium-binding protein CML48 OS=Arabidopsis thaliana GN=CML48 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.664e-36
Identity = 74/122 (60.66%), Postives = 96/122 (78.69%), Query Frame = 2
Query:  329 QFSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALS-SGYQRFSLSTIRLLMFLFKNPHDSL-RIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSV 688
            QFS+Y    F P THP+++RSFE  DR+RSGF++E+EL+QALS SGY   S  TIRLL+F++K P DSL R+GPKE+ +LW+CL QWRAIF RYDRDRSGK++  +LRDA Y++G  +P SV
Sbjct:   41 QFSSYS-GMFSPETHPEIVRSFESADRNRSGFLEESELRQALSLSGYDGISNRTIRLLLFIYKIPVDSLLRLGPKEYVELWNCLAQWRAIFNRYDRDRSGKMNSTQLRDAFYNLGCVLPTSV 161          
BLAST of FC932167 vs. ExPASy Swiss-Prot
Match: CML49_ARATH (Probable calcium-binding protein CML49 OS=Arabidopsis thaliana GN=CML49 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.462e-31
Identity = 67/120 (55.83%), Postives = 88/120 (73.33%), Query Frame = 2
Query:  332 FSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVL 691
            F++   SAFPPGT P+++  F+  DRD SGFID+ ELQ ALSS  Q FS+ T+ LLM+LF N  +  +IGPKEF  L+  L  WR+IFER+D+DRSG+ID  ELRDAL S+G++V P +L
Sbjct:  153 FASLVPSAFPPGTDPNIVACFQAADRDNSGFIDDKELQGALSSYNQSFSIRTVHLLMYLFTN-SNVRKIGPKEFTSLFFSLQNWRSIFERFDKDRSGRIDTNELRDALMSLGFSVSPVIL 271          
BLAST of FC932167 vs. ExPASy Swiss-Prot
Match: CML50_ARATH (Probable calcium-binding protein CML50 OS=Arabidopsis thaliana GN=CML50 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.722e-30
Identity = 66/120 (55.00%), Postives = 89/120 (74.17%), Query Frame = 2
Query:  332 FSAYGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQALSSGYQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVL 691
            F++   S F PGT P+++  F+  D+D SGFID+ ELQ ALSS  QRFS+ T+ LLM+LF N + +++IGPKEF  L+  L  WR+IFER D+DRSG+ID+ ELRDAL S+G++V P VL
Sbjct:  172 FASLIPSGFAPGTDPNIVACFQAADQDGSGFIDDKELQGALSSYQQRFSMRTVHLLMYLFTNSN-AMKIGPKEFTALFYSLQNWRSIFERSDKDRSGRIDVNELRDALLSLGFSVSPVVL 290          
BLAST of FC932167 vs. ExPASy Swiss-Prot
Match: PEF1_XENLA (Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 49/123 (39.84%), Postives = 71/123 (57.72%), Query Frame = 2
Query:  329 QFSAYGHSA----FPPGTHPDVIRSFEMVDRDRSGFIDENELQQAL-SSGYQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPP 682
            Q  +YG  A     PPG  P+    F+ VD D SG+I   EL+QAL ++ +  F+  T  ++M +F +  +S RI    F+ LW  + QWR +F++YDRDRSG I+  EL  AL  +GY + P
Sbjct:   97 QHGSYGQGAPAGNIPPGVDPEAFSWFQTVDTDHSGYISLKELKQALVNTNWSSFNDETCTMMMNMF-DKSNSGRIDMFGFSALWRFIQQWRNLFQQYDRDRSGSINQGELHQALCQMGYQLSP 218          
BLAST of FC932167 vs. ExPASy Swiss-Prot
Match: PEF1_MOUSE (Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 46/115 (40.00%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  341 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQAL-SSGYQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPP 682
            YG    PP   P+    F+ VD D SG+I   EL+QAL +S +  F+  T  +++ +F       RI    F+ LW  L QWR +F++YDRDRSG I   EL+ AL  +GY + P
Sbjct:   97 YGQGGVPPNVDPEAYSWFQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKSG-RIDVAGFSALWKFLQQWRNLFQQYDRDRSGSISSTELQQALSQMGYNLSP 210          
BLAST of FC932167 vs. ExPASy Swiss-Prot
Match: PEF1_RAT (Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 44/115 (38.26%), Postives = 63/115 (54.78%), Query Frame = 2
Query:  341 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQAL-SSGYQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPP 682
            YG    PP   P+    F+ VD D SG+I   EL+QAL +S +  F+  T  +++ +F       RI    F+ LW  L QW+ +F++YDRD SG I   EL+ AL  +GY + P
Sbjct:  105 YGQGGVPPNVDPEAYSWFQSVDADHSGYISLKELKQALVNSNWSSFNDETCLMMINMFDKTKTG-RIDVVGFSALWKFLQQWKNLFQQYDRDHSGSISSTELQQALSQMGYNLSP 218          
BLAST of FC932167 vs. ExPASy Swiss-Prot
Match: PEF1_HUMAN (Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 43/115 (37.39%), Postives = 63/115 (54.78%), Query Frame = 2
Query:  341 YGHSAFPPGTHPDVIRSFEMVDRDRSGFIDENELQQAL-SSGYQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPP 682
            YG    PP   P+    F+ VD D SG+I   EL+QAL +  +  F+  T  +++ +F       RI    F+ LW  + QW+ +F++YDRDRSG I   EL+ AL  +GY + P
Sbjct:  106 YGQGGAPPNVDPEAYSWFQSVDSDHSGYISMKELKQALVNCNWSSFNDETCLMMINMFDKTKSG-RIDVYGFSALWKFIQQWKNLFQQYDRDRSGSISYTELQQALSQMGYNLSP 219          
BLAST of FC932167 vs. ExPASy Swiss-Prot
Match: PEF1_DANRE (Peflin OS=Danio rerio GN=pef1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.400e-15
Identity = 42/112 (37.50%), Postives = 66/112 (58.93%), Query Frame = 2
Query:  359 PPGTHPDVIRSFEMVDRDRSGFIDENELQQALSS-GYQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGYAVPPSVL 691
            PPG +P+  + F  VD D+SG+I+  EL+QAL +     F+  T  +++ +F       R+    F+ LW+ L QWRA F+++DRDRSG I+  E+  AL  +GY + P  +
Sbjct:   98 PPGVNPEAYQWFSTVDSDQSGYINAKELKQALMNFNNSSFNDETCIMMLNMFDKTKSG-RVDVFGFSALWTFLQQWRAAFQQFDRDRSGSINTNEMHQALSQMGYNLSPQFI 208          
BLAST of FC932167 vs. ExPASy Swiss-Prot
Match: PDCD6_MOUSE (Programmed cell death protein 6 OS=Mus musculus GN=Pdcd6 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 2
Query:  392 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGY 670
            F+ VD+DRSG I +NELQQALS+G +  F+  T+R ++ +F   + +  +   EF  +W  +  W+ +F  YDRD SG ID  EL+ AL   GY
Sbjct:   32 FQRVDKDRSGVISDNELQQALSNGTWTPFNPVTVRSIISMFDRENKA-GVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGY 124          
BLAST of FC932167 vs. ExPASy Swiss-Prot
Match: PDCD6_HUMAN (Programmed cell death protein 6 OS=Homo sapiens GN=PDCD6 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 2
Query:  392 FEMVDRDRSGFIDENELQQALSSG-YQRFSLSTIRLLMFLFKNPHDSLRIGPKEFADLWSCLGQWRAIFERYDRDRSGKIDLMELRDALYSIGY 670
            F+ VD+DRSG I + ELQQALS+G +  F+  T+R ++ +F   + +  +   EF  +W  +  W+ +F  YDRD SG ID  EL+ AL   GY
Sbjct:   32 FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKA-GVNFSEFTGVWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGY 124          
The following BLAST results are available for this feature:
BLAST of FC932167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CML48_ARATH5.664e-3660.66Probable calcium-binding protein CML48 OS=Arabidop... [more]
CML49_ARATH2.462e-3155.83Probable calcium-binding protein CML49 OS=Arabidop... [more]
CML50_ARATH2.722e-3055.00Probable calcium-binding protein CML50 OS=Arabidop... [more]
PEF1_XENLA2.237e-1639.84Peflin OS=Xenopus laevis GN=pef1 PE=2 SV=1[more]
PEF1_MOUSE2.922e-1640.00Peflin OS=Mus musculus GN=Pef1 PE=2 SV=1[more]
PEF1_RAT4.220e-1538.26Peflin OS=Rattus norvegicus GN=Pef1 PE=2 SV=1[more]
PEF1_HUMAN4.220e-1537.39Peflin OS=Homo sapiens GN=PEF1 PE=1 SV=1[more]
PEF1_DANRE9.400e-1537.50Peflin OS=Danio rerio GN=pef1 PE=2 SV=1[more]
PDCD6_MOUSE7.958e-1442.55Programmed cell death protein 6 OS=Mus musculus GN... [more]
PDCD6_HUMAN3.950e-1341.49Programmed cell death protein 6 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionC34205D02EF PostHarveN Citrus clementina cDNA clone C34205D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932167 ID=FC932167; Name=FC932167; organism=Citrus clementina; type=EST; length=693bp
GAGGAATTCCAGAAGTCTCTCTCACTTCTCACGTTTGTGATCTTGTTCTG
CTCTGCTCATAGCGTTGACGTTTTAATTTTTGTAAGTAAATTATTAAAAA
ATCCGGTACCAAATCACAAATCATAATCACCATCATCATCATCGAATGTC
AAATTACAGCGGATCCTACTCTTCATCTCAATCCTACGCGCCCTCTGCGC
CTTCTCTGCCGGAGACCCACAACAACTCCTCTTACAATAACTCATCTTCG
GCTCAAAGCTATTATGCCCAGCCTCCTCCGCCTCCGCCGCCGTCGCAGCA
GCAGCCGTACCCCGCGCCGAGTCACGGGCAGTTTTCGGCGTATGGGCACT
CCGCGTTTCCGCCGGGGACCCACCCAGATGTGATAAGGAGCTTTGAAATG
GTTGATAGAGATAGAAGTGGGTTTATTGATGAGAATGAGTTGCAGCAAGC
ACTTTCTTCTGGGTACCAGAGGTTTAGTCTCAGTACTATTAGATTGCTCA
TGTTTCTTTTCAAGAATCCTCATGATTCCTTGAGAATTGGGCCTAAAGAA
TTTGCTGATTTGTGGAGTTGCCTTGGTCAATGGCGCGCTATATTTGAGAG
ATATGATCGAGACAGAAGTGGGAAAATTGATCTGATGGAATTGAGGGATG
CTCTCTACAGCATTGGGTATGCAGTCCCACCTTCAGTTCTCCA
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