FC932179

Overview
NameFC932179
Unique NameFC932179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14196 contig Ccv1_Contig14196:634..1333. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932179 vs. ExPASy Swiss-Prot
Match: MPPB_ARATH (Probable mitochondrial-processing peptidase subunit beta OS=Arabidopsis thaliana GN=At3g02090 PE=1 SV=2)

HSP 1 Score: 345.125 bits (884), Expect = 2.099e-94
Identity = 174/233 (74.68%), Postives = 190/233 (81.55%), Query Frame = 1
Query:    1 DKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGGYAVAKPGCLDDL 699
            D +VN ALD+LADILQNS F++ RI RERDVILR           V+ DHLHATAFQYTPLGRTILGPAQN+K+IT+E LQNYI THYTA RMVIAA+GA            LFTKLS+DPTT SQLVANEPA FTGSEVR+IDDD+PLAQFAVAF GASWTDPDS+ALMVMQ MLGSWNKN  GGKH+GS+L QRV INEIAES+MAFNTNYKDTGLFG YAVAK  CLDDL
Sbjct:  187 DSNVNQALDVLADILQNSKFEEQRINRERDVILREMQEVEGQTDEVVLDHLHATAFQYTPLGRTILGPAQNVKSITREDLQNYIKTHYTASRMVIAAAGAVKHEEVVEQVKKLFTKLSSDPTTTSQLVANEPASFTGSEVRMIDDDLPLAQFAVAFEGASWTDPDSVALMVMQTMLGSWNKNVGGGKHVGSDLTQRVAINEIAESIMAFNTNYKDTGLFGVYAVAKADCLDDL 419          
BLAST of FC932179 vs. ExPASy Swiss-Prot
Match: MPPB_BOVIN (Mitochondrial-processing peptidase subunit beta OS=Bos taurus GN=PMPCB PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.983e-49
Identity = 102/232 (43.97%), Postives = 142/232 (61.21%), Query Frame = 1
Query:    4 KDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGGYAVAKPGCLDDL 699
            KD+  A++ILADI+QNST  +A I RER VILR           V+FD+LHATA+Q T LGRTILGP +NIK+I ++ L +YI THY  PR+V+AA+G              F +  +  T   ++ A  P  FTGSE+R+ DD +PLA  AVA     W  PD+I LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G Y V +P  + D+
Sbjct:  149 KDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVSHDELLELAKFHFGESLS--THKGEIPALPPCKFTGSEIRVRDDKMPLAHLAVAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGIYMVCEPATVADM 378          
BLAST of FC932179 vs. ExPASy Swiss-Prot
Match: MPPB_PONAB (Mitochondrial-processing peptidase subunit beta OS=Pongo abelii GN=PMPCB PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.333e-48
Identity = 101/232 (43.53%), Postives = 141/232 (60.78%), Query Frame = 1
Query:    4 KDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGGYAVAKPGCLDDL 699
            KD+  A++ILADI+QNST  +A I RER VILR           V+FD+LHATA+Q T LGRTILGP +NIK+I+++ L +YI THY  PR+V+AA+G              F       T   ++ A  P  FTGSE+R+ DD +PLA  A+A     W  PD+I LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G Y V +P  + D+
Sbjct:  148 KDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAGGVSHDELLDLAKFHFGDSLC--THKGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEPSTVADM 377          
BLAST of FC932179 vs. ExPASy Swiss-Prot
Match: MPPB_DICDI (Mitochondrial-processing peptidase subunit beta OS=Dictyostelium discoideum GN=mppB PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.065e-48
Identity = 101/231 (43.72%), Postives = 137/231 (59.31%), Query Frame = 1
Query:    7 DVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGGYAVAKPGCLDDL 699
            +V NA+DIL+DILQNS F+ + I +ERD IL            V+FD LHA AFQ + LGRTILGP +NIK+IT+E +Q +I+ +YT  R+VI+A+GA             F  +     +     A     F GSE+R+ DD+ PL  FAVA     WTDPD   L ++Q M+G+WN+    GK++ S L + V   ++AES   F T Y+DTGLFG Y V +P  +DDL
Sbjct:  127 NVPNAVDILSDILQNSKFETSLIEQERDTILSENDYIQSKEDEVVFDQLHAAAFQGSALGRTILGPVENIKSITREQIQEFINENYTGDRLVISAAGAVNHEQLVEQVKEKFANVKMSQVSKDVKRAAITNDFIGSELRVRDDEQPLIHFAVAVRALPWTDPDYFVLELIQTMIGNWNRGIAAGKNIASNLGEIVATEDLAESYSTFFTCYQDTGLFGNYGVCQPERVDDL 357          
BLAST of FC932179 vs. ExPASy Swiss-Prot
Match: MPPB_RAT (Mitochondrial-processing peptidase subunit beta OS=Rattus norvegicus GN=Pmpcb PE=1 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 8.640e-48
Identity = 103/234 (44.02%), Postives = 141/234 (60.26%), Query Frame = 1
Query:    4 KDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTA--SQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGGYAVAKPGCLDDL 699
            KD+  A++ILADI+QNST  +A I RER VILR           V+FD+LHATA+Q T LGRTILGP +NIK+I+++ L +YI THY  PR+V+AA+G              F     D   A    + A  P  FTGSE+R+ DD +PLA  AVA     WT PD+I LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G Y V +   + D+
Sbjct:  148 KDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAGGVCHNELLELAKFHF----GDSLCAHKGDVPALPPCKFTGSEIRVRDDKMPLAHLAVAIEAVGWTHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEQATVADM 377          
BLAST of FC932179 vs. ExPASy Swiss-Prot
Match: MPPB_HUMAN (Mitochondrial-processing peptidase subunit beta OS=Homo sapiens GN=PMPCB PE=1 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.128e-47
Identity = 100/232 (43.10%), Postives = 140/232 (60.34%), Query Frame = 1
Query:    4 KDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGGYAVAKPGCLDDL 699
            KD+  A++ILADI+QNST  +A I RER VILR           V+FD+LHATA+Q T LGRTILGP +NIK+I+++ L +YI THY  PR+V+AA+G              F       T   ++ A  P  FTGSE+R+ DD +PLA  A+A     W  PD+I LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G Y V +   + D+
Sbjct:  148 KDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSISRKDLVDYITTHYKGPRIVLAAAGGVSHDELLDLAKFHFGDSLC--THKGEIPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCESSTVADM 377          
BLAST of FC932179 vs. ExPASy Swiss-Prot
Match: MPPB_NEUCR (Mitochondrial-processing peptidase subunit beta OS=Neurospora crassa GN=pep PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.474e-47
Identity = 103/235 (43.83%), Postives = 146/235 (62.13%), Query Frame = 1
Query:    1 DKDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSAD-PTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGGYAVA-KPGCLDDL 699
            ++DV   +DIL DILQNS  +++ I RERDVILR           V+FDHLHATA+Q+ PLGRTILGP +NI+ IT+  L NYI  +YTA RMV+  +G              F+KL A  P +++ +++ +   F GS++RI DD IP A  A+A  G SW+D D    +V QA++G+++K      H GS+L+  V  +++A S M+F+T+Y DTGL+G Y V  K   +DDL
Sbjct:  130 NEDVPKCVDILQDILQNSKLEESAIERERDVILRESEEVEKQLEEVVFDHLHATAYQHQPLGRTILGPRENIRDITRTELVNYIKNNYTADRMVLVGAGGVPHEQLVEMADKYFSKLPATAPVSSASILSKKKPDFIGSDIRIRDDTIPTANIAIAVEGVSWSDDDYFTGLVTQAIVGNYDKALGNAPHQGSKLSGFVHKHDLATSFMSFSTSYSDTGLWGIYLVTDKLDRVDDL 364          
BLAST of FC932179 vs. ExPASy Swiss-Prot
Match: MPPB_LENED (Mitochondrial-processing peptidase subunit beta OS=Lentinula edodes GN=mppB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.552e-47
Identity = 98/227 (43.17%), Postives = 135/227 (59.47%), Query Frame = 1
Query:    4 KDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKL--SADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGGYAVAK 678
            KDV  A+DI++DILQNS  +   I RERDVILR           V+FDHLHA AFQ  PLGRTILGP  NI +I ++ L +YI T+YTA RMV+  +G              F+ L  SA+P    +L +     F GSE RI DD++P A  A+A  G  W+ PD   +MVMQ++ G+W+++      + S L+  +  N +A S M+F+T+Y DTGL+G Y V++
Sbjct:  120 KDVPVAVDIISDILQNSKLESGAIERERDVILREQQEVDKQLEEVVFDHLHAVAFQGQPLGRTILGPKNNILSIQRDDLASYIQTNYTADRMVLVGTGGVDHQSLVKLAEKHFSSLPVSANPLALGRLSSERKPTFVGSEARIRDDELPTAHVAIAVEGVGWSSPDYFPMMVMQSIFGNWDRSLGASSLLSSRLSHIISSNSLANSFMSFSTSYSDTGLWGIYLVSE 346          
BLAST of FC932179 vs. ExPASy Swiss-Prot
Match: MPPB_MOUSE (Mitochondrial-processing peptidase subunit beta OS=Mus musculus GN=Pmpcb PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.248e-46
Identity = 99/232 (42.67%), Postives = 138/232 (59.48%), Query Frame = 1
Query:    4 KDVNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGGYAVAKPGCLDDL 699
            +D+  A++ILADI+QNST  +A I RER VILR           V+FD+LHATA+Q T LGRTILGP +NIK+I ++ L +YI THY  PR+V+AA+G              F         A  + A  P  FTGSE+R+ DD +PLA  A+A     W  PD+I LMV   ++G+W+++  GG ++ S+LAQ      +  S  +FNT+Y DTGL+G Y V +   + D+
Sbjct:  148 RDLPRAVEILADIIQNSTLGEAEIERERGVILREMQEVETNLQEVVFDYLHATAYQNTALGRTILGPTENIKSINRKDLVDYITTHYKGPRIVLAAAGGVCHNELLELAKFHFGDSLCSHKGA--IPALPPCKFTGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEQATVADM 377          
BLAST of FC932179 vs. ExPASy Swiss-Prot
Match: MPPB_SCHPO (Probable mitochondrial-processing peptidase subunit beta OS=Schizosaccharomyces pombe GN=qcr1 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.368e-43
Identity = 98/235 (41.70%), Postives = 137/235 (58.30%), Query Frame = 1
Query:   10 VNNALDILADILQNSTFDQARITRERDVILRXXXXXXXXXXXVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAXXXXXXXXXXXXLFTKLSADPTTASQLVANEP----AIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGGYAVAKP-GCLDDL 699
            V NA+ +LADIL NS+   + + RER VILR           V+FDHLHATA+Q  PLGRTILGP +NI+++T+E L  YI  +Y + RM+I+++G+             F  L     +A QL    P      F GSE+R  DDD P A  A+A  G SW  PD    +VMQA++G+W++      H+ S L+  V  +++A S M+F+T+Y DTGL+G Y V +  G +DDL
Sbjct:  115 VPNAVAVLADILTNSSISASAVERERQVILREQEEVDKMADEVVFDHLHATAYQGHPLGRTILGPKENIESLTREDLLQYIKDNYRSDRMIISSAGSISHEELVKLAEKYFGHLE---PSAEQLSLGAPRGLKPRFVGSEIRARDDDSPTANIAIAVEGMSWKHPDYFTALVMQAIIGNWDRAMGASPHLSSRLSTIVQQHQLANSFMSFSTSYSDTGLWGIYLVTENLGRIDDL 346          
The following BLAST results are available for this feature:
BLAST of FC932179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
MPPB_ARATH2.099e-9474.68Probable mitochondrial-processing peptidase subuni... [more]
MPPB_BOVIN5.983e-4943.97Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_PONAB1.333e-4843.53Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_DICDI5.065e-4843.72Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_RAT8.640e-4844.02Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_HUMAN1.128e-4743.10Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_NEUCR1.474e-4743.83Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_LENED9.552e-4743.17Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_MOUSE1.248e-4642.67Mitochondrial-processing peptidase subunit beta OS... [more]
MPPB_SCHPO8.368e-4341.70Probable mitochondrial-processing peptidase subuni... [more]

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Properties
Property NameValue
Genbank descriptionC34205E02EF PostHarveN Citrus clementina cDNA clone C34205E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932179 ID=FC932179; Name=FC932179; organism=Citrus clementina; type=EST; length=700bp
GATAAGGATGTGAATAATGCTTTGGATATTTTGGCAGATATTTTGCAGAA
CTCGACGTTTGATCAAGCGAGGATCACCAGGGAACGGGATGTTATTTTGA
GAGAAATGGAGGAGGTTGAGGGGCAAACAGAGGAAGTCATTTTTGATCAT
TTGCATGCAACTGCATTCCAGTACACTCCTTTGGGGAGAACTATTCTCGG
TCCTGCTCAGAATATCAAGACAATCACAAAAGAACATCTGCAGAACTATA
TTCACACTCACTATACTGCTCCCAGAATGGTGATTGCTGCTTCTGGAGCT
GTGAAGCATGAAGAAGTTGTTGAGCAAGTGAAGAAATTGTTCACAAAATT
ATCAGCGGATCCAACCACTGCTTCTCAATTAGTTGCAAATGAACCAGCAA
TTTTCACTGGTTCTGAGGTTAGAATAATTGATGACGATATTCCTTTGGCA
CAATTTGCGGTTGCTTTCGCTGGAGCATCTTGGACAGATCCAGATTCAAT
TGCCCTGATGGTTATGCAGGCAATGTTGGGTTCATGGAATAAAAATTCAG
TGGGTGGAAAGCACATGGGTTCCGAGCTGGCACAGAGAGTTGGCATTAAT
GAAATTGCAGAAAGCATGATGGCCTTCAACACGAACTACAAAGACACTGG
TCTGTTTGGTGGTTATGCTGTTGCTAAGCCCGGATGCTTAGATGATTTGG
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