FC932188

Overview
NameFC932188
Unique NameFC932188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length743
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15467 contig Ccv1_Contig15467:1..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932188 vs. ExPASy Swiss-Prot
Match: KASC1_ARATH (3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Arabidopsis thaliana GN=KAS1 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 9.460e-19
Identity = 55/162 (33.95%), Postives = 86/162 (53.09%), Query Frame = 1
Query:  199 MKLISPSSCNNSNITRFAILKQRQSHANQAAAYSASDGKTTAVSANSEKVAP-----EVKRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLVPPKHAKRADNYLIYALIAGKKALADAGITEQVSGALNKIDVG 669
            M+ +  SS   S      +   RQSH     A      + + +SA++  V+      + K+RVV+TG+G V+  G+D   +Y KLL G SGIS I+ FD S+ PTR  G+I+   ++G +  K+ +R D+ L Y ++AGKKAL  A +       ++K   G
Sbjct:    1 MQALQSSSLRASPPNPLRLPSNRQSHQLITNARPLRRQQRSFISASASTVSAPKRETDPKKRVVITGMGLVSVFGNDVDAYYEKLLSGESGISLIDRFDASKFPTRFGGQIRGFSSEGYIDGKNERRLDDCLKYCIVAGKKALESANLGGDKLNTIDKRKAG 162          

HSP 2 Score: 21.1718 bits (43), Expect = 9.460e-19
Identity = 7/13 (53.85%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  660 RCGVLIGTAMGSM 698
            + GVL+GT MG +
Sbjct:  160 KAGVLVGTGMGGL 172          
BLAST of FC932188 vs. ExPASy Swiss-Prot
Match: KASC1_HORVU (3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic OS=Hordeum vulgare GN=KAS12 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.310e-17
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 1
Query:  361 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLVPPKHAKRADNYLIYALIAGKKALADAGITEQVSGALNKIDVG 669
            ++RVV+TG+G  +  G D   FY +LL G SG+  I+ FD S  PTR AG+I+   ++G +  K+ +R D+ + Y +++GKKAL  AG+    S A  K+DVG
Sbjct:   47 RKRVVITGMGLASVFGSDVDTFYDRLLAGESGVGPIDRFDASSFPTRFAGQIRGFSSEGYIDGKNDRRLDDCIRYCILSGKKALESAGLGAG-SDAHVKLDVG 148          

HSP 2 Score: 22.3274 bits (46), Expect = 6.310e-17
Identity = 8/13 (61.54%), Postives = 10/13 (76.92%), Query Frame = 3
Query:  660 RCGVLIGTAMGSM 698
            R GVL+GT MG +
Sbjct:  149 RAGVLVGTGMGGL 161          
BLAST of FC932188 vs. ExPASy Swiss-Prot
Match: FABF_BACSU (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Bacillus subtilis GN=fabF PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.177e-13
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 1
Query:  361 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLVPPKHAKRADNYLIYALIAGKKAL--ADAGITEQVS 642
            K+RVVVTGLGA++PLG+D    +   + GVSGI  I   D  E P ++A E+K    +  +  K A++ D +  YA++A K A+  AD  IT++++
Sbjct:    3 KKRVVVTGLGALSPLGNDVDTSWNNAINGVSGIGPITRVDAEEYPAKVAAELKDFNVEDYMDKKEARKMDRFTQYAVVAAKMAVEDADLNITDEIA 98          
BLAST of FC932188 vs. ExPASy Swiss-Prot
Match: FABF_SYNY3 (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Synechocystis sp. (strain PCC 6803) GN=fabF PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.326e-12
Identity = 40/103 (38.83%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  361 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLVPPKHAKRADNYLIYALIAGKKALADAGITEQVSGALNKIDVG 669
            K+RVVVTGLGA+TP+G+    ++  L+EG +GI  I  FD S+   R  GE+K       +  K AKR D +  +A+ A ++A+ DA +   V   LN  ++G
Sbjct:    6 KKRVVVTGLGAITPIGNTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCASQQAINDAKL---VINELNADEIG 105          

HSP 2 Score: 21.1718 bits (43), Expect = 1.326e-12
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 3
Query:  666 GVLIGTAMGSMRFL 707
            GVLIGT +G ++ L
Sbjct:  105 GVLIGTGIGGLKVL 118          
BLAST of FC932188 vs. ExPASy Swiss-Prot
Match: FABF_SHIFL (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Shigella flexneri GN=fabF PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 1
Query:  361 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLVPPKHAKRADNYLIYALIAGKKALADAG--ITEQ 636
            KRRVVVTGLG ++P+G+     +  LL G SGIS I+ FD S   T+ AG +K    + ++  K  ++ D ++ Y ++AG +A+ D+G  ITE+
Sbjct:    3 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE 96          
BLAST of FC932188 vs. ExPASy Swiss-Prot
Match: FABF_ECOLI (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Escherichia coli (strain K12) GN=fabF PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 1
Query:  361 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLVPPKHAKRADNYLIYALIAGKKALADAG--ITEQ 636
            KRRVVVTGLG ++P+G+     +  LL G SGIS I+ FD S   T+ AG +K    + ++  K  ++ D ++ Y ++AG +A+ D+G  ITE+
Sbjct:    3 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE 96          
BLAST of FC932188 vs. ExPASy Swiss-Prot
Match: FABF_ECOL6 (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Escherichia coli O6 GN=fabF PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 1
Query:  361 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLVPPKHAKRADNYLIYALIAGKKALADAG--ITEQ 636
            KRRVVVTGLG ++P+G+     +  LL G SGIS I+ FD S   T+ AG +K    + ++  K  ++ D ++ Y ++AG +A+ D+G  ITE+
Sbjct:    3 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE 96          
BLAST of FC932188 vs. ExPASy Swiss-Prot
Match: FABF_ECO57 (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Escherichia coli O157:H7 GN=fabF PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.219e-12
Identity = 38/94 (40.43%), Postives = 59/94 (62.77%), Query Frame = 1
Query:  361 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLVPPKHAKRADNYLIYALIAGKKALADAG--ITEQ 636
            KRRVVVTGLG ++P+G+     +  LL G SGIS I+ FD S   T+ AG +K    + ++  K  ++ D ++ Y ++AG +A+ D+G  ITE+
Sbjct:    3 KRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEE 96          
BLAST of FC932188 vs. ExPASy Swiss-Prot
Match: FABF_VIBHA (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio harveyi GN=fabF PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.456e-12
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  361 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLVPPKHAKRADNYLIYALIAGKKALADAG--ITEQ 636
            KRRVVVTG+G ++P+G+     +  LLEG SGI  IE FD +   TR AG +K       +  K A++ D ++ Y + AG +AL D+G  ITE+
Sbjct:    3 KRRVVVTGMGMLSPVGNTVESSWKALLEGQSGIVNIEHFDATNFSTRFAGLVKDFDCTEYMSKKDARKMDLFIQYGIAAGIQALDDSGLEITEE 96          
BLAST of FC932188 vs. ExPASy Swiss-Prot
Match: FABF_VIBCH (3-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vibrio cholerae GN=fabF PE=3 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.453e-11
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  361 KRRVVVTGLGAVTPLGDDAHLFYTKLLEGVSGISQIEGFDCSELPTRIAGEIKTLLTDGLVPPKHAKRADNYLIYALIAGKKALADAGI 627
            KRRVVVTG+G ++P+G+     +  LL G SGI  IE FD +   TR AG +K    +  +  K A++ D ++ Y + AG +AL D+G+
Sbjct:    3 KRRVVVTGMGMLSPVGNTVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKGFDCEQYMSKKDARKMDLFIQYGIAAGIQALEDSGL 91          
The following BLAST results are available for this feature:
BLAST of FC932188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
KASC1_ARATH9.460e-1933.953-oxoacyl-[acyl-carrier-protein] synthase I, chlor... [more]
KASC1_HORVU6.310e-1741.753-oxoacyl-[acyl-carrier-protein] synthase I, chlor... [more]
FABF_BACSU1.177e-1339.583-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Bac... [more]
FABF_SYNY31.326e-1238.833-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Syn... [more]
FABF_SHIFL2.219e-1240.433-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Shi... [more]
FABF_ECOLI2.219e-1240.433-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Esc... [more]
FABF_ECOL62.219e-1240.433-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Esc... [more]
FABF_ECO572.219e-1240.433-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Esc... [more]
FABF_VIBHA6.456e-1242.553-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vib... [more]
FABF_VIBCH2.453e-1140.453-oxoacyl-[acyl-carrier-protein] synthase 2 OS=Vib... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34205E11EF PostHarveN Citrus clementina cDNA clone C34205E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932188 ID=FC932188; Name=FC932188; organism=Citrus clementina; type=EST; length=743bp
GAAGTCATTATCTATTTGGTTAAAAGAACCTCCGGAGGTTCCGTTGCTTT
TATTTCAATTCTTGTTATCAATTTGTTCAAGACAGGTTTTGTTTAATTTC
TTTCAATGGCAGCTTCTTGTCTTCCTTGTACATGGCTTCCTGCTTTCGAG
CTAGACCATGCTTTAGAGCCCCTTCTGTTGCTGTCTTCGAACAGACGTAT
GAAGCTCATATCGCCATCAAGTTGCAACAACAGCAACATTACTAGATTTG
CTATCCTAAAACAAAGACAAAGCCACGCAAATCAAGCAGCAGCTTATTCA
GCTAGTGACGGTAAAACTACAGCAGTGTCAGCAAATTCTGAAAAGGTAGC
ACCTGAAGTGAAAAGAAGAGTTGTGGTGACAGGTTTAGGTGCAGTAACAC
CCCTTGGTGATGATGCACATTTATTTTATACCAAACTTCTTGAAGGTGTT
AGTGGCATAAGCCAGATAGAGGGCTTTGATTGCTCAGAGCTTCCCACGAG
AATTGCCGGAGAAATCAAGACTCTGTTAACAGATGGTTTGGTCCCACCAA
AACATGCTAAGAGAGCGGACAACTACTTGATTTATGCTCTCATTGCTGGC
AAGAAAGCTTTGGCAGATGCTGGAATTACTGAACAAGTTAGTGGAGCGTT
AAATAAAATAGATGTGGGGTTTTAATTGGCACTGCAATGGGAAGCATGCG
ATTCTTATAAAACAGAGTGTGCCCGCAGCTCTTAAGATGAATC
back to top