FC932198

Overview
NameFC932198
Unique NameFC932198
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig175 contig Ccv1_Contig175:339..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932198 vs. ExPASy Swiss-Prot
Match: TC753_ARATH (Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3 PE=1 SV=1)

HSP 1 Score: 437.958 bits (1125), Expect = 2.527e-122
Identity = 209/234 (89.32%), Postives = 221/234 (94.44%), Query Frame = 2
Query:    2 TENFTRQSKFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLSGTGIDRMAFLQGNITRDNTKFVNGAIVGERNVFQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILELGAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAKLGLVRAEYAVDH 703
            TENFTRQSKFTYGLVMEEITTRDESSHI+ +GQR+LPSGGISADGPPTTLSGTG+DRMAFLQ NITRDNTKFVNGA+VG+R VFQVDQGLGIGSKFPFFNRHQLT+T+F QL++VE+GA K PPPVLVLHGHYGGCVGDLPSYDAF LGGPYSVRGYNMGELGAARNI E+GAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPT VYRR G GSSYG G KLGLVRAEYAVDH
Sbjct:  570 TENFTRQSKFTYGLVMEEITTRDESSHIAANGQRLLPSGGISADGPPTTLSGTGVDRMAFLQANITRDNTKFVNGAVVGQRTVFQVDQGLGIGSKFPFFNRHQLTMTKFIQLREVEQGAGKSPPPVLVLHGHYGGCVGDLPSYDAFVLGGPYSVRGYNMGELGAARNIAEVGAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPTAVYRRTGQGSSYGAGVKLGLVRAEYAVDH 803          
BLAST of FC932198 vs. ExPASy Swiss-Prot
Match: TOC75_PEA (Protein TOC75, chloroplastic OS=Pisum sativum GN=TOC75 PE=1 SV=1)

HSP 1 Score: 421.779 bits (1083), Expect = 1.874e-117
Identity = 202/234 (86.32%), Postives = 213/234 (91.03%), Query Frame = 2
Query:    2 TENFTRQSKFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLSGTGIDRMAFLQGNITRDNTKFVNGAIVGERNVFQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILELGAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAKLGLVRAEYAVDH 703
            TENF+RQSKFTYGLVMEEI TRDES+HI  +GQRVLP+G ISADGPPTTLSGTGIDRMAFLQ NITRDNT+FVNG IVG RN+FQVDQGLG+GS FPFFNRHQLT+T+F QL  VEEGA K PPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGE+GAARNILEL AEIRIP+K THVYAF EHG DLGSSKDVKGNPT VYRRMG GSSYG G KLGLVRAEYAVDH
Sbjct:  561 TENFSRQSKFTYGLVMEEIITRDESNHICSNGQRVLPNGAISADGPPTTLSGTGIDRMAFLQANITRDNTRFVNGTIVGSRNMFQVDQGLGVGSNFPFFNRHQLTVTKFLQLMSVEEGAGKSPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGEIGAARNILELAAEIRIPIKGTHVYAFAEHGTDLGSSKDVKGNPTVVYRRMGQGSSYGAGMKLGLVRAEYAVDH 794          
BLAST of FC932198 vs. ExPASy Swiss-Prot
Match: TOC75_ORYSJ (Protein TOC75, chloroplastic OS=Oryza sativa subsp. japonica GN=TOC75 PE=2 SV=2)

HSP 1 Score: 393.66 bits (1010), Expect = 5.465e-109
Identity = 184/234 (78.63%), Postives = 209/234 (89.32%), Query Frame = 2
Query:    2 TENFTRQSKFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLSGTGIDRMAFLQGNITRDNTKFVNGAIVGERNVFQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILELGAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAKLGLVRAEYAVDH 703
            TE+FTRQSKFTYGLV+EEITTRDE++ I  HG R +PSGG+S DGPPTTLSGTGIDRMAFLQ NITRDNT+FVNGA++G+R +FQ+DQGLGIGSK PFFNRHQLTLT+F  L + E+GA KP P VLVLHGHY GCVGDLPSYDAFTLGGPYSVRGY MGELGA+RN+LE+ +E+RIPV+NT+VY FVEHG DLGSSKDVKGNPTE +RR+GHGSSYG+G KLGLVR EY VDH
Sbjct:  569 TESFTRQSKFTYGLVVEEITTRDETNSICTHGSRAMPSGGLSMDGPPTTLSGTGIDRMAFLQANITRDNTEFVNGAVIGDRCIFQLDQGLGIGSKNPFFNRHQLTLTKFVNLNKQEKGAGKPLPAVLVLHGHYAGCVGDLPSYDAFTLGGPYSVRGYGMGELGASRNVLEVASELRIPVRNTYVYGFVEHGTDLGSSKDVKGNPTEFFRRVGHGSSYGLGVKLGLVRGEYIVDH 802          
BLAST of FC932198 vs. ExPASy Swiss-Prot
Match: TC754_ARATH (Protein TOC75-4, chloroplastic OS=Arabidopsis thaliana GN=TOC75-4 PE=2 SV=1)

HSP 1 Score: 381.719 bits (979), Expect = 2.149e-105
Identity = 181/234 (77.35%), Postives = 203/234 (86.75%), Query Frame = 2
Query:    2 TENFTRQSKFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLSGTGIDRMAFLQGNITRDNTKFVNGAIVGERNVFQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILELGAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAKLGLVRAEYAVDH 703
            TEN TRQ + TYG++ EEI TRDE+  IS +G  + P GGIS +GPPTTLSGTGID +A LQ NITRDNTK VNGA+VGE+N+FQVDQGLGIG+ FP FNRHQL+LT F QLKQVEEG++KP PPVLVLHG YGGC+GDLPSYD F LGGP SVRGY+MGELGAA+NILELGAEIRIPVKNTHVYAF EHGNDLGSSKDVKGNPT +YR+MGHGSSYG+G KLG+VRAEY V H
Sbjct:  148 TENLTRQRELTYGVMFEEIITRDENRRISENGLLLSPDGGISINGPPTTLSGTGIDHIATLQANITRDNTKLVNGAVVGEKNIFQVDQGLGIGNNFPLFNRHQLSLTSFIQLKQVEEGSDKPQPPVLVLHGRYGGCIGDLPSYDVFALGGPNSVRGYSMGELGAAKNILELGAEIRIPVKNTHVYAFAEHGNDLGSSKDVKGNPTGLYRKMGHGSSYGLGVKLGMVRAEYTVRH 381          
BLAST of FC932198 vs. ExPASy Swiss-Prot
Match: OEP80_ARATH (Outer envelope protein of 80 kDa OS=Arabidopsis thaliana GN=OEP80 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 49/154 (31.82%), Postives = 74/154 (48.05%), Query Frame = 2
Query:  251 FQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLV-LHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILELGAEIRIPVKN-THVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAK----LGLVRAEYA 694
            F ++QGL +  ++  FNR            +  +G +  P   L  L G  G  VG    ++AF +GG  SVRGY  G +G+ R+ +    E+  PV+       F ++G D+GS   V G+P     + G G  YG+G +    LG +R EYA
Sbjct:  573 FNMEQGLPVLPEWLCFNR---------VTGRARKGIHIGPARFLFSLSG--GHVVGKFSPHEAFVIGGTNSVRGYEEGAVGSGRSYVVGSGELSFPVRGPVEGVIFTDYGTDMGSGSTVPGDPAGARLKPGSGYGYGLGVRVDSPLGPLRLEYA 715          
BLAST of FC932198 vs. ExPASy Swiss-Prot
Match: OEP80_ORYSJ (Outer envelope protein of 80 kDa OS=Oryza sativa subsp. japonica GN=OEP80 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.972e-11
Identity = 49/157 (31.21%), Postives = 76/157 (48.41%), Query Frame = 2
Query:  248 VFQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNIL----ELGAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAK----LGLVRAEYA 694
            VF ++QGL I  ++  FNR    L + +++           P  L+L    G   G+   ++AF +GG  SVRGY  G +G+ R+      E+   +  P++      F ++G+DL S   V G+P     + G G  YGVG +    LG +R EYA
Sbjct:  505 VFNIEQGLPILPEWLSFNRVTARLRQGYEIG----------PARLLLSASGGHVEGNFSPHEAFAIGGTNSVRGYEEGAVGSGRSYAVGSGEVSCRMFGPLEGV---VFGDYGSDLSSGPKVPGDPAGARGKPGSGYGYGVGVRVDSPLGPLRLEYA 648          
The following BLAST results are available for this feature:
BLAST of FC932198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TC753_ARATH2.527e-12289.32Protein TOC75-3, chloroplastic OS=Arabidopsis thal... [more]
TOC75_PEA1.874e-11786.32Protein TOC75, chloroplastic OS=Pisum sativum GN=T... [more]
TOC75_ORYSJ5.465e-10978.63Protein TOC75, chloroplastic OS=Oryza sativa subsp... [more]
TC754_ARATH2.149e-10577.35Protein TOC75-4, chloroplastic OS=Arabidopsis thal... [more]
OEP80_ARATH6.869e-1131.82Outer envelope protein of 80 kDa OS=Arabidopsis th... [more]
OEP80_ORYSJ8.972e-1131.21Outer envelope protein of 80 kDa OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionC34205F10EF PostHarveN Citrus clementina cDNA clone C34205F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932198 ID=FC932198; Name=FC932198; organism=Citrus clementina; type=EST; length=727bp
CACAGAGAATTTCACCCGTCAAAGCAAATTCACATATGGTCTTGTTATGG
AAGAGATAACGACACGTGATGAAAGCAGCCACATATCTCCACATGGTCAA
AGAGTGTTGCCGAGTGGAGGAATTAGTGCAGATGGACCTCCAACCACCCT
CAGTGGTACTGGAATTGACCGAATGGCATTTCTACAGGGAAACATCACCC
GTGACAACACCAAGTTTGTTAATGGAGCTATAGTTGGTGAGAGGAATGTA
TTTCAGGTGGACCAAGGCCTTGGTATTGGCAGCAAGTTTCCGTTCTTTAA
TCGCCATCAATTGACGTTGACGCGATTTTTCCAATTGAAGCAAGTTGAAG
AAGGTGCTAATAAACCACCGCCTCCTGTTCTAGTACTTCATGGCCACTAT
GGAGGTTGCGTTGGAGACCTACCAAGTTATGATGCATTTACACTTGGGGG
TCCCTATTCAGTTAGGGGTTACAATATGGGTGAGTTAGGTGCTGCTAGAA
ACATTCTAGAGCTAGGAGCTGAGATCCGGATTCCTGTGAAAAACACGCAT
GTGTATGCTTTTGTTGAGCATGGCAATGATCTAGGAAGTTCAAAGGATGT
CAAGGGGAACCCGACAGAGGTCTACAGGCGAATGGGTCACGGTTCATCGT
ATGGTGTTGGTGCCAAGCTGGGGCTAGTGCGAGCTGAGTATGCTGTTGAT
CATACACTGGAACTGGTGCCTTATTCT
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