FC932231

Overview
NameFC932231
Unique NameFC932231
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15478 contig Ccv1_Contig15478:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932231 vs. ExPASy Swiss-Prot
Match: RAF1B_WHEAT (Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 56/154 (36.36%), Postives = 84/154 (54.55%), Query Frame = 3
Query:  231 IFFTINDLKIGKSLPIYFSYKDPSTSPHLLPRDEANSIPFSSSELPYLLEFFSFSKDSHQAQAMKYTLTQCELQPLKGETKFCVTSLESMLDFTRGVFGLETNFKILTTNFIANPLIGNPLQNYTILKLPEEIYAPKMVACHSMPYPYAVFYCH 692
            +FF    +++G+ LP +F    P+     LPR  A+S+PF+++ LP +L  F  + DS    +M+ TL  CE   + GE+KFC TSLE++++   GV G      + +T     P  G PLQ YT++ +      P  VACH   YPY V+ CH
Sbjct:  141 VFFHEEAVRVGRRLPFHFPPATPAALG-FLPRQVADSVPFTTAALPGILATFGIASDSTTVPSMEATLRACESPTIAGESKFCATSLEALVERAMGVLGTRDIRPVTST----LPRAGAPLQTYTVVAVQPVEGGPVFVACHDEAYPYTVYRCH 289          
BLAST of FC932231 vs. ExPASy Swiss-Prot
Match: BURPH_ORYSJ (BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=BURP17 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.468e-22
Identity = 61/166 (36.75%), Postives = 92/166 (55.42%), Query Frame = 3
Query:  231 IFFTINDLKIGKSL--PIYFSYKDPSTSPHLLPRDEANSIPFSSSELPYLLEFFSFSKDSHQAQAMKYTLTQCELQPLKGETKFCVTSLESMLDFTRGVFGLETNFKILTTNFIANPLIGNPL-QNYTILKLPEEIYAPKMVACHSMPYPYAVFYCHYXESENKLF 719
            +FF   +L+ GK +   ++F+    +T+   LPR +A+SIPFSS ELP +L+ F     S  A  M  TL  CEL   KGE K C TSLES++DF    FG  ++    +T  ++  +  + L Q+YT+  +       +++ACH   YPYAVF CH  E+  + +
Sbjct:  362 LFFLEKNLQQGKKINNALHFANLLATTNSKFLPRGKADSIPFSSKELPEILDRFGVRPGSDDAAEMSATLQDCELPANKGEKKACATSLESIVDFVTSSFG-ASDVDAASTVVLSKAVESSSLAQDYTVSGVRRMAGTGQLIACHPESYPYAVFMCHLTEATTRAY 526          
BLAST of FC932231 vs. ExPASy Swiss-Prot
Match: BURP5_ORYSJ (BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.210e-21
Identity = 60/158 (37.97%), Postives = 83/158 (52.53%), Query Frame = 3
Query:  231 IFFTINDLKIGKSLPIYFSYKDPSTSPHLLPRDEANSIPFSSSELPYLLEFFSFSKDSHQAQAMKYTLTQCELQPLKGETKFCVTSLESMLDFTRGVFGLETNFKILTTNFIANPLIGNPLQNYTILKLPEEIYAPKMVACHSMPYPYAVFYCHYXES 704
            +FF   +L+  KS+ ++F+     T    LPR EA+++PFSS +L  +L  F     S  A  +K TL +CEL   KGE K C TSLESM+DF     G   + K  +T F+       P Q YT+          +++ACH   YPYAVF CH  E+
Sbjct:  108 LFFLETNLQSSKSIKLHFANMMAGTK--FLPRGEADAVPFSSKDLQEILARFGVRPGSVDASVVKNTLLECELPANKGEKKACATSLESMVDFVASSLGTR-DIKAAST-FLVGKDGDTPAQEYTVTGARRMAETGQLIACHPESYPYAVFMCHLTEA 261          
BLAST of FC932231 vs. ExPASy Swiss-Prot
Match: BURP3_ORYSJ (BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.475e-21
Identity = 59/157 (37.58%), Postives = 84/157 (53.50%), Query Frame = 3
Query:  231 IFFTINDLKIGKSLPIYFSYKDPSTSPHLLPRDEANSIPFSSSELPYLLEFFSFSKDSHQAQAMKYTLTQCELQPLKGETKFCVTSLESMLDFTRGVFGLETNFKILTTNFIANPLIGNPLQNYTILKLPEEIYA---PKMVACHSMPYPYAVFYCH 692
            +FF   DL  GK++ ++F+    +     LPR EA+++PFSS ++P +L  FS    S +A  M  TL  CE  P +GE K C TSLESM+DF     G  T+     +  +     G+P Q YT+  +          ++VACH+ PY YAVF CH
Sbjct:  212 LFFLEKDLHPGKTMAVHFTAT--TAGEKFLPRSEADAMPFSSEKVPEILSRFSVKPGSVEAAEMAQTLRDCEAPPAQGERKACATSLESMVDFATSSLG--TSHVRAASTVVGKE--GSPEQEYTVTAVKRAAAGGDQDQLVACHAEPYAYAVFACH 362          
BLAST of FC932231 vs. ExPASy Swiss-Prot
Match: RAF1A_WHEAT (Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.339e-21
Identity = 56/154 (36.36%), Postives = 81/154 (52.60%), Query Frame = 3
Query:  231 IFFTINDLKIGKSLPIYFSYKDPSTSPHLLPRDEANSIPFSSSELPYLLEFFSFSKDSHQAQAMKYTLTQCELQPLKGETKFCVTSLESMLDFTRGVFGLETNFKILTTNFIANPLIGNPLQNYTILKLPEEIYAPKMVACHSMPYPYAVFYCH 692
            +FF    +++GK LP  F    P+     LPR  A+S+PF+++ LP +L  F  + DS    +M+ TL  CE   + GE+KFC TSLE++++    V G      + +T     P  G PLQ YT+  +      P  VACH   YPY V+ CH
Sbjct:  168 VFFHEEAVRVGKRLPFRFPPATPAALG-FLPRQVADSVPFTTAALPGVLATFGVASDSATVASMEATLRACESPTIAGESKFCATSLEALVERAMEVLGTRDIRPVTST----LPRAGAPLQTYTVRSVRPVEGGPVFVACHDEAYPYTVYRCH 316          
BLAST of FC932231 vs. ExPASy Swiss-Prot
Match: BURP6_ORYSJ (BURP domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=BURP6 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.717e-20
Identity = 60/155 (38.71%), Postives = 79/155 (50.97%), Query Frame = 3
Query:  231 IFFTINDLKIGKSLPIYFSYKDPSTSPHLLPRDEANSIPFSSSELPYLLEFFSFSKDSHQAQAMKYTLTQCELQPLKGETKFCVTSLESMLDFTRGVFGLETNFKILTTNFIANPLIGNPLQNYTILKL-PEEIYAPKMVACHSMPYPYAVFYCH 692
            +FF   DL  G  + ++F+      +  LLPR  A+S+PF+S +LP +L   S    S  A AM+ TL +CE  P  GE K C TSLESM++F     G      + T    A P    P Q Y +  + P  +    MVACH M Y YAVF CH
Sbjct:   27 VFFLEKDLFPGSKMTLHFTRATAGAA--LLPRGRADSVPFASEKLPEILSQLSVPAGSPAADAMRSTLAECEAAPQAGEAKRCATSLESMVEFAASSLGTRDVHAVSTEVDRAGP---TPRQAYRVEAVRPVPVSGGDMVACHGMAYAYAVFGCH 176          
BLAST of FC932231 vs. ExPASy Swiss-Prot
Match: RD22_ARATH (Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 56/156 (35.90%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  231 IFFTINDLKIGKSLPIYFSYKDP-STSPHLLPRDEANSIPFSSSELPYLLEFFSFSKDSHQAQAMKYTLTQCELQPLKGETKFCVTSLESMLDFTRGVFGLETNFKILTTNFIANPLIGNPLQNYTILKL-PEEIYAPKMVACHSMPYPYAVFYCH 692
            +FF   DL  GK + + F+ +D        LPR EA ++PF S +    L+ FS    S +A+ MK T+ +CE + + GE K+C TSLESM+DF+    G + + + ++T          P+Q Y I     +++   K V CH   YP+AVFYCH
Sbjct:  175 LFFLEKDLVRGKEMNVRFNAEDGYGGKTAFLPRGEAETVPFGSEKFSETLKRFSVEAGSEEAEMMKKTIEECEARKVSGEEKYCATSLESMVDFSVSKLG-KYHVRAVSTEVAKK---NAPMQKYKIAAAGVKKLSDDKSVVCHKQKYPFAVFYCH 326          
BLAST of FC932231 vs. ExPASy Swiss-Prot
Match: BURPD_ORYSJ (BURP domain-containing protein 13 OS=Oryza sativa subsp. japonica GN=BURP13 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 58/155 (37.42%), Postives = 81/155 (52.26%), Query Frame = 3
Query:  231 IFFTINDLKIGKSLPIYFSYKDPSTSPHLLPRDEANSIPFSSSELPYLLEFFSFSKDSHQAQAMKYTLTQCELQPLKGETKFCVTSLESMLDFTRGVFGLETNFKILTTNFIANPLIGNPLQNYTI-LKLPEEIYAPKMVACHSMPYPYAVFYCH 692
            +FF    +++G+ LP YF     S     LPR  A+SIPF+++ LP +L  F  + D+ +A  M+ TL  CE   L GE+KFC TSLE++++      G      + +T     P  G PLQ Y +   LP E      VACH   YPY V+ CH
Sbjct:  189 VFFHEEAVRVGERLPFYFPAATTSALG-FLPRRVADSIPFTAAALPAVLALFGVAPDTAEAAGMRETLRTCEWPTLAGESKFCATSLEALVEGAMAALGTRDIAALAST----LPRGGAPLQAYAVRAVLPVE--GAGFVACHDQAYPYTVYRCH 336          
BLAST of FC932231 vs. ExPASy Swiss-Prot
Match: BURP8_ORYSJ (BURP domain-containing protein 8 OS=Oryza sativa subsp. japonica GN=BURP8 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 56/160 (35.00%), Postives = 82/160 (51.25%), Query Frame = 3
Query:  225 EQIFFTINDLKIGKSLPIYFSYKDPSTSPHLLPRDEANSIPFSSSELPYLLEFFSFSKDSHQAQAMKYTLTQCE--LQPLKGETKFCVTSLESMLDFTRGVFGLETNFKILTTNFIANPLIGNPLQNYTI--LKLPEEIYAPKMVACHSMPYPYAVFYCH 692
            + +FF   DL  G  + ++F+         +L R  A++IPF+S +LP +L   S    S  A+ M+ TL +CE  L   + + K CVTSLESM++F     G   + + ++T  I       P Q YT+  +K    +    MV CH MPY YAVF CH
Sbjct:   95 DAVFFLEKDLFPGSKITLHFTRGGACAM--VLLRGRADAIPFASEKLPEILTQLSVPAGSRAAEDMRTTLAECEAALLGARDQAKHCVTSLESMVEFAAASLGTR-DIRAVSTEVIGTGAAETPRQEYTVEAVKPVVSVSGGNMVTCHGMPYAYAVFGCH 251          
BLAST of FC932231 vs. ExPASy Swiss-Prot
Match: BURP1_ORYSJ (BURP domain-containing protein 1 OS=Oryza sativa subsp. japonica GN=BURP1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.665e-18
Identity = 59/159 (37.11%), Postives = 78/159 (49.06%), Query Frame = 3
Query:  231 IFFTINDLKIGKSLPIYFSYKDPSTSPHLLPRDEANSIPFSSSELPYLLEFFSFSKDSHQAQAMKYTLTQCELQPLKGET----KFCVTSLESMLDFTRGVFGLETNFKILTTNFIANPLIGNPLQNYTILKL-PEEIYAPKMVACHSMPYPYAVFYCH 692
            +FF   DL  G  + ++F+      +  LLPR  A S+PF+S  LP +L   S    S  A AM  TL +CE   L GET     +C TSLESM++F     G      + T   + + L   P Q Y +  + P  +    MVACH MPY YAVF  H
Sbjct:   64 VFFLEKDLFPGSKMTLHFTRATAGAA--LLPRGRAESVPFASERLPEILSQLSIPAVSPTADAMWSTLAECEAARLAGETTKHKHYCATSLESMVEFVASSLGTRDVHAVSTE--VISTLTPTPRQAYRVEAVRPVAVPGGDMVACHGMPYAYAVFGLH 218          
The following BLAST results are available for this feature:
BLAST of FC932231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RAF1B_WHEAT2.223e-2236.36Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B... [more]
BURPH_ORYSJ6.468e-2236.75BURP domain-containing protein 17 OS=Oryza sativa ... [more]
BURP5_ORYSJ3.210e-2137.97BURP domain-containing protein 5 OS=Oryza sativa s... [more]
BURP3_ORYSJ5.475e-2137.58BURP domain-containing protein 3 OS=Oryza sativa s... [more]
RAF1A_WHEAT9.339e-2136.36Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A... [more]
BURP6_ORYSJ2.717e-2038.71BURP domain-containing protein 6 OS=Oryza sativa s... [more]
RD22_ARATH6.053e-2035.90Dehydration-responsive protein RD22 OS=Arabidopsis... [more]
BURPD_ORYSJ2.300e-1937.42BURP domain-containing protein 13 OS=Oryza sativa ... [more]
BURP8_ORYSJ9.665e-1835.00BURP domain-containing protein 8 OS=Oryza sativa s... [more]
BURP1_ORYSJ9.665e-1837.11BURP domain-containing protein 1 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC34206A07EF PostHarveN Citrus clementina cDNA clone C34206A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932231 ID=FC932231; Name=FC932231; organism=Citrus clementina; type=EST; length=720bp
GGAGATTCTTTGAATAGCAGCAGCAAGCGCTCTCAAGACCAAGCACAGAT
ATGGGTTCTCTTTTATCTTCCCGGAGCTTCACCCTCTGCATCCTTCTTGT
TTTAATGTTTGCTCAAAAGAGTACATCCAGGAAGGTAGTGACTAAAGATA
ATCAGCAAGCTTTAGCTAATACTGATGGTCACCCGTCATCATCACACATG
ATGAATAGTCATATGGACCCTTCAGAGCAAATTTTCTTTACCATTAATGA
TCTTAAAATTGGAAAATCTTTGCCCATTTATTTCTCTTACAAAGATCCTT
CAACTTCACCTCATTTGTTACCTAGAGATGAAGCCAATTCAATTCCTTTC
TCTTCATCTGAATTACCTTATCTTCTTGAATTCTTCTCCTTCTCAAAAGA
CTCTCACCAAGCCCAGGCCATGAAATACACACTTACTCAATGCGAACTTC
AACCCCTCAAAGGAGAGACCAAGTTTTGTGTTACCTCCTTAGAATCCATG
CTTGATTTCACACGCGGCGTCTTCGGATTGGAAACCAACTTCAAAATTTT
AACCACTAATTTCATCGCAAACCCGTTAATTGGTAATCCTTTGCAAAACT
ATACCATCTTGAAATTGCCTGAAGAAATTTATGCTCCAAAAATGGTAGCA
TGTCATTCTATGCCTTACCCATATGCAGTCTTTTATTGCCATTATNCAGA
GAGTGAGAACAAGTTGTTTC
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