FC932245

Overview
NameFC932245
Unique NameFC932245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length681
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15130 contig Ccv1_Contig15130:4..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932245 vs. ExPASy Swiss-Prot
Match: RS103_ARATH (40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 4.504e-46
Identity = 85/97 (87.63%), Postives = 93/97 (95.88%), Query Frame = 1
Query:   88 MIIPGKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 378
            MII   NRKEICKYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKS+EYVRETFAWMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP
Sbjct:    1 MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of FC932245 vs. ExPASy Swiss-Prot
Match: RS10_ORYSJ (40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10 PE=2 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 5.882e-46
Identity = 86/97 (88.66%), Postives = 91/97 (93.81%), Query Frame = 1
Query:   88 MIIPGKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 378
            MIIP KNR EICKYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKS+EYVRETF+W +YYWYLTNDGIE LR YLNLPSEIVPATLKKSA+P
Sbjct:    1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARP 97          
BLAST of FC932245 vs. ExPASy Swiss-Prot
Match: RS101_ARATH (40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.919e-45
Identity = 83/97 (85.57%), Postives = 92/97 (94.85%), Query Frame = 1
Query:   88 MIIPGKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 378
            MII   NR+EICKYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKS+EYVRETFAWMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP
Sbjct:    1 MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of FC932245 vs. ExPASy Swiss-Prot
Match: RS102_ARATH (40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.403e-39
Identity = 78/98 (79.59%), Postives = 88/98 (89.80%), Query Frame = 1
Query:   88 MIIPGKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 378
            MII   NR+EI KYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKS+EYVRETFAWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKK  KP
Sbjct:    1 MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKP 98          
BLAST of FC932245 vs. ExPASy Swiss-Prot
Match: RS10_SPOFR (40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.133e-31
Identity = 62/97 (63.92%), Postives = 80/97 (82.47%), Query Frame = 1
Query:   88 MIIPGKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAK 375
            M++P +NR  I +YLF+EGV  AKKDY+  KHP+++ +PNLQVIK MQS KSR YV+E FAW H+YWYLTN+GIE+LR +L+LP EIVPATLK+S +
Sbjct:    1 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 97          
BLAST of FC932245 vs. ExPASy Swiss-Prot
Match: RS10_LUMRU (40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.718e-30
Identity = 60/97 (61.86%), Postives = 75/97 (77.32%), Query Frame = 1
Query:   88 MIIPGKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 378
            M++  KNR  I +YLF+EGV  AKKD++L KH EIDVPNL VI+ MQS  SR YV+E F W HYYWYL N+GI++LR +L+LP EIVPATLK+  +P
Sbjct:    1 MLMSKKNRVMIYEYLFKEGVLVAKKDFHLPKHGEIDVPNLHVIRAMQSLVSRGYVKEQFCWRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKRQTRP 97          
BLAST of FC932245 vs. ExPASy Swiss-Prot
Match: RS10_RAT (40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 1
Query:   88 MIIPGKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 369
            M++P KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
BLAST of FC932245 vs. ExPASy Swiss-Prot
Match: RS10_MOUSE (40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 1
Query:   88 MIIPGKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 369
            M++P KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
BLAST of FC932245 vs. ExPASy Swiss-Prot
Match: RS10_ICTPU (40S ribosomal protein S10 OS=Ictalurus punctatus GN=rps10 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 60/100 (60.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:   88 MIIPGKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 378
            M++P KNR  I + LF+EGV  AKKD +LAKHPE+   +VPNL V+K MQS KS  YV+E FAW H+YWYLTN+GI++LR +L+LP EIVPATL++  +P
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHLAKHPELADKNVPNLHVMKAMQSLKSCGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRQTRP 100          
BLAST of FC932245 vs. ExPASy Swiss-Prot
Match: RS10_HUMAN (40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.533e-29
Identity = 60/97 (61.86%), Postives = 77/97 (79.38%), Query Frame = 1
Query:   88 MIIPGKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 369
            M++P KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
The following BLAST results are available for this feature:
BLAST of FC932245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS103_ARATH4.504e-4687.6340S ribosomal protein S10-3 OS=Arabidopsis thalian... [more]
RS10_ORYSJ5.882e-4688.6640S ribosomal protein S10 OS=Oryza sativa subsp. j... [more]
RS101_ARATH2.919e-4585.5740S ribosomal protein S10-1 OS=Arabidopsis thalian... [more]
RS102_ARATH1.403e-3979.5940S ribosomal protein S10-2 OS=Arabidopsis thalian... [more]
RS10_SPOFR3.133e-3163.9240S ribosomal protein S10 OS=Spodoptera frugiperda... [more]
RS10_LUMRU7.718e-3061.8640S ribosomal protein S10 OS=Lumbricus rubellus GN... [more]
RS10_RAT8.533e-2961.8640S ribosomal protein S10 OS=Rattus norvegicus GN=... [more]
RS10_MOUSE8.533e-2961.8640S ribosomal protein S10 OS=Mus musculus GN=Rps10... [more]
RS10_ICTPU8.533e-2960.0040S ribosomal protein S10 OS=Ictalurus punctatus G... [more]
RS10_HUMAN8.533e-2961.8640S ribosomal protein S10 OS=Homo sapiens GN=RPS10... [more]

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Properties
Property NameValue
Genbank descriptionC34206C05EF PostHarveN Citrus clementina cDNA clone C34206C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932245 ID=FC932245; Name=FC932245; organism=Citrus clementina; type=EST; length=681bp
GCCCCTTACATCTTTCCACTGAGACGAGCCATTCGTTCCTCGCGCAGCTT
GACAGAAAGGGTTAAGCTCAATCTTCACTTCGCAACCATGATTATTCCAG
GGAAGAACCGCAAAGAAATCTGCAAGTACCTCTTCCAAGAGGGAGTATGC
TATGCAAAGAAGGATTATAATCTTGCGAAGCACCCAGAAATCGATGTTCC
AAACCTGCAGGTGATTAAGCTGATGCAGAGCTTCAAATCTAGGGAGTATG
TTCGTGAGACATTTGCGTGGATGCACTATTATTGGTACCTTACGAATGAT
GGGATTGAGTTTTTGAGGACTTACCTCAATCTTCCATCAGAAATTGTTCC
TGCTACCTTGAAGAAATCCGCTAAGCCAGCTGGTCGCCCGATGGGTGGAC
CTGGTGGTGATCGTCCAAGGGGCCCACCTCGTTTTGATGGAGACCGACCG
AGGTTTGGTGACCGTGAAGGGCACCGTGGTGGTCCTCGTGGTGGTGACTT
TGGTGGTGAGAAAGGTGGAGCCCCTGCTGATTTCCAGCCATCCTTCAGGG
GTTCTGGTGGAAGACCTGGTTTTGGTCGCGGAGGTGGAGGCTATGGTGCA
GCTCCATCAGGTTCAGGATTTCCTTGAAAGTTAGGCCGGTTTGCTTAGTT
CATGTTTGCCCCAAATAGTGTTTCAAGTCTT
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