FC932249

Overview
NameFC932249
Unique NameFC932249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length675
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932249 vs. ExPASy Swiss-Prot
Match: CDC5L_ARATH (Cell division cycle 5-like protein OS=Arabidopsis thaliana GN=CDC5 PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 9.102e-60
Identity = 111/167 (66.47%), Postives = 131/167 (78.44%), Query Frame = 3
Query:   15 NLARMRESQTPLLGGENPELHPSDFSGVTPKKREIQTPNPILTPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQAELRRNLRLGLTSLPQPTNEYQIVVQXXXXXXXXXXXXXXXDMSDRLARERPRKKLGSRHCLGRDQK 515
            NLAR+R+SQTPLLGGENPELHPSDF+GVTP+K+EIQTPNP+LTPS TPGG G TPRIG+TPSRDGSSF +TPKGTP RDELHINED+DMH+SAKLE++R+ E RR+LR GLT LPQP NEYQIV Q               DMSDR+ARE+  ++   +  L +  K
Sbjct:  371 NLARLRDSQTPLLGGENPELHPSDFTGVTPRKKEIQTPNPMLTPSMTPGGAGLTPRIGLTPSRDGSSFSMTPKGTPFRDELHINEDMDMHESAKLERQRREEARRSLRSGLTGLPQPKNEYQIVAQPPPEESEEPEEKIEEDMSDRIAREKAEEEARQQALLKKRSK 537          

HSP 2 Score: 97.8265 bits (242), Expect = 5.398e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 2
Query:  464 KAEEEARQQALLRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEII 646
            KAEEEARQQALL+KRSKVLQR+LPRPP ASL +IRNSLL ADGDKSS VPPT IE AD+++
Sbjct:  521 KAEEEARQQALLKKRSKVLQRDLPRPPAASLAVIRNSLLSADGDKSSVVPPTPIEVADKMV 581          
BLAST of FC932249 vs. ExPASy Swiss-Prot
Match: CDC5L_NEMVE (Cell division cycle 5-related protein OS=Nematostella vectensis GN=cdc5l PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.066e-23
Identity = 57/130 (43.85%), Postives = 83/130 (63.85%), Query Frame = 3
Query:   15 NLARMRESQTPLLGGENPELHPSDFSGVTPKKREIQTPNPIL-TPSATPG-GMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINED---LDMHDSAKLEQRRQAELRRNLRLGLTSLPQPTNEYQIVV 389
            N+  +    TPL GG N  +H SDF GVTP+++ IQTPN +L TP  TPG G GSTPR GMTP     + G TP    +RD+L+IN +   ++ ++S    +++Q+E +  L  GL SLP P+N+++IV+
Sbjct:  368 NILALSNVDTPLKGGLNTPMHESDFQGVTPRQQAIQTPNMLLSTPYRTPGEGSGSTPRQGMTPR---GAIG-TPSQRSVRDKLNINPEDAVMEEYESECAAKQQQSEAKEQLLAGLASLPAPSNDFEIVL 493          

HSP 2 Score: 31.187 bits (69), Expect = 1.066e-23
Identity = 18/59 (30.51%), Postives = 36/59 (61.02%), Query Frame = 2
Query:  479 ARQQAL-LRKRSKVLQRELPRPPVASLELIRNSLLRADGDKSSFVPPTSIEQADEIIER 652
            A+Q+ L  R+RS+ +QRELPRP   +  ++R + +          P ++++ A+E+I++
Sbjct:  525 AKQEELERRRRSQAVQRELPRPSNVNTSVLRPTNVEP--------PLSALQMAEELIKK 575          
BLAST of FC932249 vs. ExPASy Swiss-Prot
Match: CDC5L_HUMAN (Cell division cycle 5-like protein OS=Homo sapiens GN=CDC5L PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.421e-20
Identity = 60/130 (46.15%), Postives = 79/130 (60.77%), Query Frame = 3
Query:   15 NLARMRESQTPLLGGENPELHPSDFSGVTPKKREIQTPNPIL-TPSATP--GGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHD--SAKLEQRRQAELRRNLRLGLTSLPQPTNEYQIVV 389
            NL  +    TPL GG N  LH SDFSGVTP+++ +QTPN +L TP  TP  G  G TPR G TP    +S   TP  TP+RD+L+IN +  M D       ++ + E R +LRLGL  LP P N+++IV+
Sbjct:  368 NLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPKPVINS---TPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGLLGLPAPKNDFEIVL 494          
BLAST of FC932249 vs. ExPASy Swiss-Prot
Match: CDC5L_BOVIN (Cell division cycle 5-like protein OS=Bos taurus GN=CDC5L PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.421e-20
Identity = 60/130 (46.15%), Postives = 79/130 (60.77%), Query Frame = 3
Query:   15 NLARMRESQTPLLGGENPELHPSDFSGVTPKKREIQTPNPIL-TPSATP--GGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHD--SAKLEQRRQAELRRNLRLGLTSLPQPTNEYQIVV 389
            NL  +    TPL GG N  LH SDFSGVTP+++ +QTPN +L TP  TP  G  G TPR G TP    +S   TP  TP+RD+L+IN +  M D       ++ + E R +LRLGL  LP P N+++IV+
Sbjct:  368 NLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSHGSEGLTPRSGTTPKPVINS---TPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGLLGLPAPKNDFEIVL 494          
BLAST of FC932249 vs. ExPASy Swiss-Prot
Match: CDC5L_RAT (Cell division cycle 5-related protein OS=Rattus norvegicus GN=Cdc5l PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.855e-20
Identity = 59/130 (45.38%), Postives = 77/130 (59.23%), Query Frame = 3
Query:   15 NLARMRESQTPLLGGENPELHPSDFSGVTPKKREIQTPNPIL-TPSATP--GGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHD--SAKLEQRRQAELRRNLRLGLTSLPQPTNEYQIVV 389
            NL  +    TPL GG N  LH SDFSGVTP+++ +QTPN +L TP  TP  G  G TPR G TP         TP  TP+RD+L+IN +  M D       ++ + E R +LRLGL  LP P N+++IV+
Sbjct:  368 NLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPK---PVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGLLGLPAPKNDFEIVL 494          
BLAST of FC932249 vs. ExPASy Swiss-Prot
Match: CDC5L_MOUSE (Cell division cycle 5-related protein OS=Mus musculus GN=Cdc5l PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.855e-20
Identity = 59/130 (45.38%), Postives = 77/130 (59.23%), Query Frame = 3
Query:   15 NLARMRESQTPLLGGENPELHPSDFSGVTPKKREIQTPNPIL-TPSATP--GGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHD--SAKLEQRRQAELRRNLRLGLTSLPQPTNEYQIVV 389
            NL  +    TPL GG N  LH SDFSGVTP+++ +QTPN +L TP  TP  G  G TPR G TP         TP  TP+RD+L+IN +  M D       ++ + E R +LRLGL  LP P N+++IV+
Sbjct:  368 NLMALTNVDTPLKGGLNTPLHESDFSGVTPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTPK---PVTNATPGRTPLRDKLNINPEDGMADYSDPSYVKQMERESREHLRLGLLGLPAPKNDFEIVL 494          
BLAST of FC932249 vs. ExPASy Swiss-Prot
Match: CEF1_CRYNE (Pre-mRNA-splicing factor CEF1 OS=Cryptococcus neoformans GN=CEF1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.054e-15
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 3
Query:   15 NLARMRESQTPLLGGENPELH-PS---DFSGVTPKKREIQTPNPILTPSATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKL-EQRRQAELRRNLRLGLTSLPQPTNEYQI 383
            NL  M  +QTPLLG EN  LH PS    F G TP+     TPNP+ T +   GG+       +T +R     G TP  TP RD+L+IN+D  ++    + ++RR AE RR L+ G  +LP+P N +++
Sbjct:  379 NLRNMMAAQTPLLGEENTPLHGPSVGTGFEGATPRHDVAATPNPLATSAR--GGV-------LTSTRTVPGVGTTPLRTPFRDDLNINDDASVYGETPMNDRRRLAESRRALKAGFAALPKPENNFEL 497          
BLAST of FC932249 vs. ExPASy Swiss-Prot
Match: CEF1_MAGGR (Pre-mRNA-splicing factor CEF1 OS=Magnaporthe grisea GN=CEF1 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 1.941e-13
Identity = 46/129 (35.66%), Postives = 63/129 (48.84%), Query Frame = 3
Query:   15 NLARMRESQTPLLGGENPELHP----SDFSGVTPKKREIQTPNPILTP--------SATPGGMGSTPRIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLEQRRQAELRRNLRLGLTSLPQP 365
            N+  ++E+Q+ LLGGEN  LH     + F GV P+K+ + TPNP+ TP          TPGG G+TPR          + G TP  TP RD   +N   D           +   R+ L  GL +LP+P
Sbjct:  382 NIRALQETQSSLLGGENTPLHEGVASTGFDGVAPRKQVMSTPNPLATPMRSGANGMGMTPGGPGATPR----------APGQTPLRTP-RDGFSLNSVGD-----------EVASRQQLLKGLAALPKP 488          

HSP 2 Score: 31.9574 bits (71), Expect = 1.941e-13
Identity = 13/29 (44.83%), Postives = 22/29 (75.86%), Query Frame = 2
Query:  476 EARQQALLRKRSKVLQRELPRPPVASLEL 562
            EA++    R+R++V+QR+LPRP V  ++L
Sbjct:  526 EAQEALERRRRTQVMQRDLPRPAVVDIDL 554          
BLAST of FC932249 vs. ExPASy Swiss-Prot
Match: CEF1_NEUCR (Pre-mRNA-splicing factor cef-1 OS=Neurospora crassa GN=cef-1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.171e-13
Identity = 44/124 (35.48%), Postives = 67/124 (54.03%), Query Frame = 3
Query:   15 NLARMRESQTPLLGGENPELHP----SDFSGVTPKKREIQTPNPILTPSATPG-GMGSTP-RIGMTPSRDGSSFGVTPKGTPIRDELHINEDLDMHDSAKLE-QRRQAELRRNLRLGLTSLPQP 365
            N+  + E+Q+ LLGGEN  LH     + F  V P+K+ + TPNP+ TP    G G G+TP R+G TP R       TP+ T   ++    +++ M      + + R+  +R  L+ GL SLP+P
Sbjct:  378 NIRALTETQSSLLGGENTPLHQGVGSTGFESVAPRKQVMSTPNPLATPLRAAGAGPGATPLRVGQTPLR-------TPRDTFALND--AGDEMSMVGGTPRDVKMREMSIRHQLKQGLASLPKP 492          

HSP 2 Score: 27.7202 bits (60), Expect = 7.171e-13
Identity = 11/22 (50.00%), Postives = 18/22 (81.82%), Query Frame = 2
Query:  476 EARQQALLRKRSKVLQRELPRP 541
            EAR+    ++R++V+QR+LPRP
Sbjct:  530 EARELLERKRRTQVMQRDLPRP 551          
BLAST of FC932249 vs. ExPASy Swiss-Prot
Match: CEF1_USTMA (Pre-mRNA-splicing factor CEF1 OS=Ustilago maydis GN=CEF1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 49/133 (36.84%), Postives = 69/133 (51.88%), Query Frame = 3
Query:   15 NLARMRESQTPLLGGENPELHPSDFSGV-TPKKREIQTPNPILTPSATPGGMGSTPRIGMTPSRDGSSF----GVTPKGTPIRDELHINEDLDM---HDSAKLEQRRQAELRRNLRLGLTSLPQPTNEYQIVV 389
            +L  +   QTPLLG  N +L  S  SG+ TP     QTPNP+LTP           R G TP+    S       TP+ TP+RD L +N D      H++ +  +R ++  + +LR  L+SLP P N++ IVV
Sbjct:  383 HLRLISSMQTPLLGDVNVDLQSSKSSGIQTPGSFVPQTPNPLLTPGL---------RNGQTPASASDSRLHADTSTPQRTPLRDNLGLNVDDSFQAGHETPRELKRARSLAQSHLRQSLSSLPAPKNDFDIVV 506          
The following BLAST results are available for this feature:
BLAST of FC932249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CDC5L_ARATH9.102e-6066.47Cell division cycle 5-like protein OS=Arabidopsis ... [more]
CDC5L_NEMVE1.066e-2343.85Cell division cycle 5-related protein OS=Nematoste... [more]
CDC5L_HUMAN1.421e-2046.15Cell division cycle 5-like protein OS=Homo sapiens... [more]
CDC5L_BOVIN1.421e-2046.15Cell division cycle 5-like protein OS=Bos taurus G... [more]
CDC5L_RAT1.855e-2045.38Cell division cycle 5-related protein OS=Rattus no... [more]
CDC5L_MOUSE1.855e-2045.38Cell division cycle 5-related protein OS=Mus muscu... [more]
CEF1_CRYNE1.054e-1539.84Pre-mRNA-splicing factor CEF1 OS=Cryptococcus neof... [more]
CEF1_MAGGR1.941e-1335.66Pre-mRNA-splicing factor CEF1 OS=Magnaporthe grise... [more]
CEF1_NEUCR7.171e-1335.48Pre-mRNA-splicing factor cef-1 OS=Neurospora crass... [more]
CEF1_USTMA3.507e-1136.84Pre-mRNA-splicing factor CEF1 OS=Ustilago maydis G... [more]
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Properties
Property NameValue
Genbank descriptionC34206D01EF PostHarveN Citrus clementina cDNA clone C34206D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932249 ID=FC932249; Name=FC932249; organism=Citrus clementina; type=EST; length=675bp
ATGATGGAAGCTGAAACCTGGCCCGGATGAGAGAGTCTCAGACACCCTTG
TTGGGGGGTGAGAACCCAGAGTTGCACCCTTCAGATTTTTCGGGGGTCAC
TCCTAAAAAGAGGGAAATTCAAACACCAAATCCAATACTGACTCCCTCAG
CAACACCTGGTGGCATGGGAAGTACTCCAAGAATTGGGATGACACCATCA
AGGGATGGCTCTTCTTTCGGTGTGACCCCAAAAGGAACACCCATCAGGGA
TGAGCTCCACATAAATGAAGACTTGGACATGCATGATAGTGCCAAACTTG
AACAACGAAGACAAGCTGAATTAAGAAGAAACTTGCGTTTAGGTCTAACT
AGTCTTCCGCAGCCCACGAATGAATACCAAATTGTTGTCCAACCACCCGC
AGAAGAAGATGAAGAGCCAGAGGAGAAGATTGAAGAAGACATGTCTGATA
GGCTAGCCAGGGAAAGGCCGAGGAAGAAGCTAGGCAGCAGGCATTGCTTA
GGAAGAGATCAAAAGTGCTGCAGAGGGAGCTTCCTAGACCCCCTGTTGCT
TCATTGGAGCTAATTAGAAATTCTTTGCTTAGGGCTGATGGAGACAAGAG
TTCCTTCGTTCCTCCTACTTCTATTGAGCAGGCTGACGAAATTATAGAAA
GGAGCTGCTGAAATTGCTGGAACAT
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