FC932252

Overview
NameFC932252
Unique NameFC932252
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932252 vs. ExPASy Swiss-Prot
Match: Y5262_ARATH (Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.585e-48
Identity = 99/223 (44.39%), Postives = 145/223 (65.02%), Query Frame = 1
Query:    1 TALLIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDIAEKLGNTELFSLLKEAGAAHSK-----DHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFXXXXXXXXXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTE---GFSLGQAHIAKNAAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWLACLFISL 645
            T L IA++K R +IV+ +L    +   ++NK+GE+ LDIAEK G  E+  LL++ G  +++     +  +P  ++++LK+TVS+I H+V +QL+Q+ +T                 GLNNAINS+T+VA+LIATVAFAAIF VPGQY ++  +   G+SLG+A  A    F+IF VFDS ALFISLA          IE +AK+Q++ +INKLMW+AC+ IS+
Sbjct:  229 TPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREIQGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEARAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVVIERRAKKQMMAIINKLMWMACIMISV 451          

HSP 2 Score: 34.6538 bits (78), Expect = 4.585e-48
Identity = 16/29 (55.17%), Postives = 21/29 (72.41%), Query Frame = 3
Query:  642 IAFISLTYVVVGEHSRWLAVSATVIGGTI 728
            +AF+SL++VVVGE  + LAV  T IG  I
Sbjct:  451 VAFVSLSFVVVGEKEKPLAVGVTAIGALI 479          
BLAST of FC932252 vs. ExPASy Swiss-Prot
Match: Y2168_ARATH (Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.327e-37
Identity = 89/214 (41.59%), Postives = 125/214 (58.41%), Query Frame = 1
Query:    1 TALLIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDIAEKLGNTE----LFSLLKEAGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFXXXXXXXXXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWLAC 630
            TAL IA +K R QI   LL+   I+VN++N   E+ +D+A+KL  +E    +   L EAGA H +  G+   A + LK+ VSDIKH+VQSQL Q+ +T                  + N  NS TVVAVL A++AF AIF +PGQY    TEG  +GQA+IA    F +F + ++ +LFISLA           + +A++++V V+NKLMW AC
Sbjct:  232 TALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYSESALEINEALVEAGAKHGRFIGREDEA-RALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAKELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYF---TEGSHVGQANIAGRTGFRVFCLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKLMWAAC 441          

HSP 2 Score: 31.5722 bits (70), Expect = 1.327e-37
Identity = 11/30 (36.67%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  639 FIAFISLTYVVVGEHSRWLAVSATVIGGTI 728
            F AF+++ + VVG+ + W+A++ T++G  I
Sbjct:  445 FGAFLAIAFAVVGKGNSWMAITITLLGAPI 474          
BLAST of FC932252 vs. ExPASy Swiss-Prot
Match: Y3236_ARATH (Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.996e-36
Identity = 91/219 (41.55%), Postives = 127/219 (57.99%), Query Frame = 1
Query:    1 TALLIAIKKGRTQIVRCLLSIEGIDVNSLNKAGESPLDIAEKLGNTELFSLLKE----AGAAHSKDHGKPPSATKQLKQTVSDIKHDVQSQLQQSRQTGFXXXXXXXXXXXXXXSGLNNAINSSTVVAVLIATVAFAAIFTVPGQYVEEKTEGFSLGQAHIAKNAAFIIFFVFDSLALFISLAXXXXXXXXXXIEEKAKRQLVFVINKLMWLACLFISL 645
            TAL +A +K R +IV  LLS+   + N+L +  ++ LDIAE L  +E  S +KE    +GA  + +  +P     +L+ TV+ IK+DV  QL+Q+++T                 G+NNA NS TVVAVL ATVAFAAIFTVPG    +       G A +   A+F IFF+F++LALF SLA           E KA++++V VINKLMWLA +  S+
Sbjct:  302 TALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLSEESSYIKECLARSGALRANELNQPRD---ELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNND-------GSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMWLASMCTSV 510          

HSP 2 Score: 34.2686 bits (77), Expect = 6.996e-36
Identity = 13/29 (44.83%), Postives = 20/29 (68.97%), Query Frame = 3
Query:  642 IAFISLTYVVVGEHSRWLAVSATVIGGTI 728
            +AF++ +Y+VVG  + W A   TV+GG I
Sbjct:  510 VAFLASSYIVVGRKNEWAAELVTVVGGVI 538          
The following BLAST results are available for this feature:
BLAST of FC932252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y5262_ARATH4.585e-4844.39Ankyrin repeat-containing protein At5g02620 OS=Ara... [more]
Y2168_ARATH1.327e-3741.59Ankyrin repeat-containing protein At2g01680 OS=Ara... [more]
Y3236_ARATH6.996e-3641.55Ankyrin repeat-containing protein At3g12360 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC34206D04EF PostHarveN Citrus clementina cDNA clone C34206D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932252 ID=FC932252; Name=FC932252; organism=Citrus clementina; type=EST; length=729bp
ACCGCATTGCTTATTGCCATAAAGAAGGGTCGAACTCAGATTGTACGATG
CTTATTATCGATTGAGGGCATTGATGTTAATTCATTAAATAAGGCCGGAG
AGAGCCCGCTTGACATTGCAGAAAAACTTGGAAACACTGAGCTTTTTTCT
CTGTTGAAGGAAGCAGGAGCCGCCCATTCTAAAGACCATGGAAAGCCCCC
AAGTGCAACAAAGCAACTTAAGCAGACTGTCAGTGACATAAAGCATGACG
TTCAGTCTCAACTCCAGCAGTCCCGACAAACTGGTTTCAAAGTCCATAAA
ATTGCGAAGAAACTGAAGAAGCTCCACATTAGTGGACTCAACAATGCTAT
AAACTCTTCAACTGTGGTTGCTGTTCTCATTGCTACTGTTGCTTTTGCTG
CCATCTTCACTGTGCCTGGACAATATGTTGAGGAAAAAACAGAGGGTTTT
TCCCTTGGGCAAGCTCACATAGCAAAAAATGCAGCTTTCATCATCTTCTT
TGTGTTTGACAGTCTAGCATTATTCATCTCACTGGCTGTTGTCGTTGTCC
AGACATCTGTGGTGGTCATTGAAGAAAAGGCAAAGAGGCAACTTGTGTTT
GTGATTAACAAGCTCATGTGGCTGGCTTGCCTCTTTATTTCATTGCATTT
ATTTCTCTAACTTATGTGGTAGTAGGCGAGCATTCTAGATGGCTTGCTGT
GTCTGCGACAGTAATCGGTGGTACAATAT
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