FC932318

Overview
NameFC932318
Unique NameFC932318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13882 contig Ccv1_Contig13882:18..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC932318 vs. ExPASy Swiss-Prot
Match: WRK32_ARATH (Probable WRKY transcription factor 32 OS=Arabidopsis thaliana GN=WRKY32 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.182e-30
Identity = 75/166 (45.18%), Postives = 100/166 (60.24%), Query Frame = 1 
Query:  211 KGLQVNSGVESNEGTKLKVE----VSQHEGSGSIAVQAAESQTQYQLQPSICPTSLSELSPTSVTEPISSAPSPTLTGQNLSLVKVDTASVPEANLQNSSELKNVSVVHIVKTPVSDGYNWRKYGQKQVKSPKGSRSYYKCTYSDCCAKKIECSDHSGHVIEIGNK 696
            +G++ NS VE N    L+V     V +   S  + V   E   Q +  PS+  +S S     +VT  +S  P+   T Q+L LV V T    +    +S  +  +SV  + +TP  DGYNWRKYGQKQVKSPKGSRSYY+CTY++CCAKKIECS+ SG+V+EI NK
Sbjct:   60 QGVRENSSVEPNVEDVLEVNETDSVKETVVSAIVPVDEVEENRQVETSPSLAASSDS----LTVTPCLSLDPATASTAQDLPLVSVPTK---QEQRSDSPVVNRLSVTPVPRTPARDGYNWRKYGQKQVKSPKGSRSYYRCTYTECCAKKIECSNDSGNVVEIVNK 218
The following BLAST results are available for this feature:
BLAST of FC932318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
WRK32_ARATH2.182e-3045.18Probable WRKY transcription factor 32 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC34207C10EF PostHarveN Citrus clementina cDNA clone C34207C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932318 ID=FC932318; Name=FC932318; organism=Citrus clementina; type=EST; length=712bp
AGAGAGAGTATTTTGATTTGATTTTCGGGCATGGCTGAAAGCGAGAGCTT
CGAAGCTCGTAAACGACATGAAAACCCTCAAAACGACGAGTTTGAAGAAG
AAGAGGAAGAGGAGGATGAGGAAATATTAGACGACGAAGAAGAAGATGAG
GGAGCGAGTCAACTCACTGAGCCACACCAACTGCAACTCACCGAGAATAA
TAAACACCATAAAGGTTTACAAGTGAATTCTGGAGTGGAATCCAATGAAG
GAACTAAACTGAAGGTTGAGGTGTCTCAACATGAAGGTTCGGGAAGTATA
GCGGTCCAGGCTGCTGAATCTCAGACACAATATCAACTTCAGCCATCCAT
ATGCCCAACATCCTTATCTGAGCTATCACCTACTTCTGTTACAGAACCTA
TATCATCTGCTCCAAGTCCAACTTTAACAGGACAAAACCTGTCACTTGTA
AAGGTTGATACTGCATCTGTGCCAGAAGCAAACTTGCAAAACTCTTCTGA
GCTGAAAAATGTATCTGTTGTTCATATTGTGAAGACACCTGTTTCTGATG
GTTACAATTGGCGGAAATATGGTCAAAAACAAGTTAAGAGTCCTAAAGGT
TCTCGAAGCTACTACAAGTGCACATATTCTGATTGTTGTGCTAAAAAGAT
TGAATGTTCTGATCACTCAGGTCATGTTATAGAGATTGGTAATAAGGCAT
GCACAGTCATGA
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