FC932342

Overview
NameFC932342
Unique NameFC932342
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length511
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14548 contig Ccv1_Contig14548:20..530. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1_ARATH (DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP1 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 2.060e-69
Identity = 132/170 (77.65%), Postives = 150/170 (88.24%), Query Frame = 2
Query:    2 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAKKRKPPLMKDSDG 511
            TLKVGNVECIPPNK+KFDFLGKDSIQYVNTVEVE  VYKAIGQFQ GK + DDLFD+LDT+KLNAHLKEL+PGLTAKVFRTYNASITLD ML++ T DGDV  KI VYQ+ANKEVAIICNHQRTVSKTH AQ+ +LT +I++L  VLK+L+ +L+RAKK KPPL + SDG
Sbjct:  657 TLKVGNVECIPPNKIKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVTQKIVVYQKANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPPL-EGSDG 825          
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1_DAUCA (DNA topoisomerase 1 OS=Daucus carota GN=TOP1 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.133e-59
Identity = 123/175 (70.29%), Postives = 141/175 (80.57%), Query Frame = 2
Query:    2 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGM-----LNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAKKRKPPLMKDSDG 511
            TLKV NVE   PN LKFDFLGKDSI+Y N VEVE  V+ AI QF++GK+  DDLFD+LDT+KLNAHLKELMPGLTAKVFRTYNASITLD M     L++ T  GDVA K+ VYQ ANKEVAIICNHQRTVSK+HSAQM RL +KI++L G+LK+L+ DL R  K KPPL K+SDG
Sbjct:  507 TLKVENVETKRPNILKFDFLGKDSIRYQNEVEVEPRVFSAIEQFRSGKEGGDDLFDQLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMVRCKLLSRETKGGDVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMVRLNEKIEELKGLLKELQEDLTRVNKGKPPL-KNSDG 680          
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1_CAEEL (DNA topoisomerase 1 OS=Caenorhabditis elegans GN=top-1 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.319e-35
Identity = 81/145 (55.86%), Postives = 96/145 (66.21%), Query Frame = 2
Query:   44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAK 475
            ++FDFLGKDSI+Y N V VE  VYK +  F  GK  +DDLFD+LDTA LN HL+ LM GLT KVFRTYNASITL   L K T   D VA KI  Y RAN++VAI+CNHQR VSK     M +L  KI+D    +K+    L  A+
Sbjct:  574 VEFDFLGKDSIRYFNRVSVEKRVYKNLKIFMEGKAPSDDLFDRLDTATLNDHLRSLMDGLTVKVFRTYNASITLQEQLIKLTNPKDNVAAKILSYNRANRQVAILCNHQRAVSKGFDESMQKLEQKIKDKKKEVKEAEAALKSAR 718          
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1M_HUMAN (DNA topoisomerase I, mitochondrial OS=Homo sapiens GN=TOP1MT PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 4.058e-33
Identity = 80/164 (48.78%), Postives = 99/164 (60.37%), Query Frame = 2
Query:    2 TLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAK 475
            +L+V +V+  P      + ++FDFLGKD I+Y N V VE PVYK +  F   K   DDLFD+L T  LN HL+ELM GLTAKVFRTYNASITL   L   T  +  +A KI  Y RAN+ VAI+CNHQR    T    M  L  KIQ     + + R +L RA+
Sbjct:  342 SLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPRDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAELRRAR 505          
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1_CERAE (DNA topoisomerase 1 OS=Cercopithecus aethiops GN=TOP1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.181e-32
Identity = 80/155 (51.61%), Postives = 97/155 (62.58%), Query Frame = 2
Query:   44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAKKRKPPLMKDS 505
            ++FDFLGKDSI+Y N V VE  V+K +  F   K+  DDLFD+L+T  LN HL++LM GLTAKVFRTYNASITL   L + T  D ++  KI  Y RAN+ VAI+CNHQR   KT    M  L  KI      L D R DL  A K    +MKD+
Sbjct:  527 VEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVMKDA 680          
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1_HUMAN (DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.542e-32
Identity = 80/155 (51.61%), Postives = 97/155 (62.58%), Query Frame = 2
Query:   44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAKKRKPPLMKDS 505
            ++FDFLGKDSI+Y N V VE  V+K +  F   K+  DDLFD+L+T  LN HL++LM GLTAKVFRTYNASITL   L + T  D ++  KI  Y RAN+ VAI+CNHQR   KT    M  L  KI      L D R DL  A K    +MKD+
Sbjct:  525 VEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDA 678          
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1M_PANTR (DNA topoisomerase I, mitochondrial OS=Pan troglodytes GN=TOP1MT PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.014e-32
Identity = 79/164 (48.17%), Postives = 99/164 (60.37%), Query Frame = 2
Query:    2 TLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAK 475
            +L+V +V+  P      + ++FDFLGKD I+Y N V VE PVYK +  F   K   D+LFD+L T  LN HL+ELM GLTAKVFRTYNASITL   L   T  +  +A KI  Y RAN+ VAI+CNHQR    T    M  L  KIQ     + + R +L RA+
Sbjct:  342 SLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMESKGPRDNLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAELRRAR 505          
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1_RAT (DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.435e-32
Identity = 80/155 (51.61%), Postives = 96/155 (61.94%), Query Frame = 2
Query:   44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAKKRKPPLMKDS 505
            ++FDF GKDSI+Y N V VE  V+K +  F   K+  DDLFD+L+T  LN HL++LM GLTAKVFRTYNASITL   L + T  D +V  KI  Y RAN+ VAI+CNHQR   KT    M  L  KI      L D R DL  A K    +MKD+
Sbjct:  527 VEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARKDLKSA-KADAKVMKDA 680          
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1_MOUSE (DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 4.486e-32
Identity = 80/155 (51.61%), Postives = 96/155 (61.94%), Query Frame = 2
Query:   44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAKKRKPPLMKDS 505
            ++FDF GKDSI+Y N V VE  V+K +  F   K+  DDLFD+L+T  LN HL++LM GLTAKVFRTYNASITL   L + T  D +V  KI  Y RAN+ VAI+CNHQR   KT    M  L  KI      L D R DL  A K    +MKD+
Sbjct:  527 VEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSA-KADAKVMKDA 680          
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1_CRIGR (DNA topoisomerase 1 OS=Cricetulus griseus GN=TOP1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.486e-32
Identity = 80/155 (51.61%), Postives = 96/155 (61.94%), Query Frame = 2
Query:   44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAKKRKPPLMKDS 505
            ++FDF GKDSI+Y N V VE  V+K +  F   K+  DDLFD+L+T  LN HL++LM GLTAKVFRTYNASITL   L + T  D +V  KI  Y RAN+ VAI+CNHQR   KT    M  L  KI      L D R DL  A K    +MKD+
Sbjct:  527 VEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSA-KADAKVMKDA 680          
The following BLAST results are available for this feature:
BLAST of FC932342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
TOP1_ARATH2.060e-6977.65DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP... [more]
TOP1_DAUCA1.133e-5970.29DNA topoisomerase 1 OS=Daucus carota GN=TOP1 PE=2 ... [more]
TOP1_CAEEL3.319e-3555.86DNA topoisomerase 1 OS=Caenorhabditis elegans GN=t... [more]
TOP1M_HUMAN4.058e-3348.78DNA topoisomerase I, mitochondrial OS=Homo sapiens... [more]
TOP1_CERAE1.181e-3251.61DNA topoisomerase 1 OS=Cercopithecus aethiops GN=T... [more]
TOP1_HUMAN1.542e-3251.61DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 S... [more]
TOP1M_PANTR2.014e-3248.17DNA topoisomerase I, mitochondrial OS=Pan troglody... [more]
TOP1_RAT3.435e-3251.61DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 P... [more]
TOP1_MOUSE4.486e-3251.61DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 S... [more]
TOP1_CRIGR4.486e-3251.61DNA topoisomerase 1 OS=Cricetulus griseus GN=TOP1 ... [more]

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Properties
Property NameValue
Genbank descriptionC34207F01EF PostHarveN Citrus clementina cDNA clone C34207F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932342 ID=FC932342; Name=FC932342; organism=Citrus clementina; type=EST; length=511bp
TACTTTAAAAGTAGGGAATGTTGAGTGTATCCCACCAAATAAATTGAAGT
TTGACTTCCTTGGTAAAGATTCGATCCAATATGTAAACACAGTTGAAGTT
GAGCTTCCTGTCTACAAGGCAATTGGACAATTTCAAACTGGAAAGAAGCA
AAATGATGATCTTTTCGACAAACTGGATACAGCTAAACTGAATGCTCACC
TGAAGGAACTCATGCCTGGACTTACAGCCAAAGTCTTCCGTACATATAAT
GCCTCTATCACATTGGATGGGATGTTGAATAAGGGAACAGGAGATGGTGA
TGTTGCAGTAAAAATAGATGTTTATCAGCGTGCAAACAAAGAGGTTGCTA
TTATTTGTAATCATCAGAGAACTGTTTCAAAAACTCATTCTGCACAGATG
TCAAGATTAACTGACAAGATACAAGACCTTAACGGTGTTCTGAAAGACTT
GAGAGTTGATTTAAACAGAGCTAAAAAAAGGAAGCCACCATTGATGAAGG
ATTCTGATGGA
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