FC932342
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1_ARATH (DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP1 PE=1 SV=1) HSP 1 Score: 261.151 bits (666), Expect = 2.060e-69 Identity = 132/170 (77.65%), Postives = 150/170 (88.24%), Query Frame = 2 Query: 2 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAKKRKPPLMKDSDG 511 TLKVGNVECIPPNK+KFDFLGKDSIQYVNTVEVE VYKAIGQFQ GK + DDLFD+LDT+KLNAHLKEL+PGLTAKVFRTYNASITLD ML++ T DGDV KI VYQ+ANKEVAIICNHQRTVSKTH AQ+ +LT +I++L VLK+L+ +L+RAKK KPPL + SDG Sbjct: 657 TLKVGNVECIPPNKIKFDFLGKDSIQYVNTVEVEPLVYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKDGDVTQKIVVYQKANKEVAIICNHQRTVSKTHGAQIEKLTARIEELKEVLKELKTNLDRAKKGKPPL-EGSDG 825
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1_DAUCA (DNA topoisomerase 1 OS=Daucus carota GN=TOP1 PE=2 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 1.133e-59 Identity = 123/175 (70.29%), Postives = 141/175 (80.57%), Query Frame = 2 Query: 2 TLKVGNVECIPPNKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGM-----LNKGTGDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAKKRKPPLMKDSDG 511 TLKV NVE PN LKFDFLGKDSI+Y N VEVE V+ AI QF++GK+ DDLFD+LDT+KLNAHLKELMPGLTAKVFRTYNASITLD M L++ T GDVA K+ VYQ ANKEVAIICNHQRTVSK+HSAQM RL +KI++L G+LK+L+ DL R K KPPL K+SDG Sbjct: 507 TLKVENVETKRPNILKFDFLGKDSIRYQNEVEVEPRVFSAIEQFRSGKEGGDDLFDQLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMVRCKLLSRETKGGDVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMVRLNEKIEELKGLLKELQEDLTRVNKGKPPL-KNSDG 680
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1_CAEEL (DNA topoisomerase 1 OS=Caenorhabditis elegans GN=top-1 PE=2 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 3.319e-35 Identity = 81/145 (55.86%), Postives = 96/145 (66.21%), Query Frame = 2 Query: 44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTGDGD-VAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAK 475 ++FDFLGKDSI+Y N V VE VYK + F GK +DDLFD+LDTA LN HL+ LM GLT KVFRTYNASITL L K T D VA KI Y RAN++VAI+CNHQR VSK M +L KI+D +K+ L A+ Sbjct: 574 VEFDFLGKDSIRYFNRVSVEKRVYKNLKIFMEGKAPSDDLFDRLDTATLNDHLRSLMDGLTVKVFRTYNASITLQEQLIKLTNPKDNVAAKILSYNRANRQVAILCNHQRAVSKGFDESMQKLEQKIKDKKKEVKEAEAALKSAR 718
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1M_HUMAN (DNA topoisomerase I, mitochondrial OS=Homo sapiens GN=TOP1MT PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 4.058e-33 Identity = 80/164 (48.78%), Postives = 99/164 (60.37%), Query Frame = 2 Query: 2 TLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAK 475 +L+V +V+ P + ++FDFLGKD I+Y N V VE PVYK + F K DDLFD+L T LN HL+ELM GLTAKVFRTYNASITL L T + +A KI Y RAN+ VAI+CNHQR T M L KIQ + + R +L RA+ Sbjct: 342 SLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMENKDPRDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAELRRAR 505
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1_CERAE (DNA topoisomerase 1 OS=Cercopithecus aethiops GN=TOP1 PE=2 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.181e-32 Identity = 80/155 (51.61%), Postives = 97/155 (62.58%), Query Frame = 2 Query: 44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAKKRKPPLMKDS 505 ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQR KT M L KI L D R DL A K +MKD+ Sbjct: 527 VEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARRDLKSA-KADAKVMKDA 680
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1_HUMAN (DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2) HSP 1 Score: 138.658 bits (348), Expect = 1.542e-32 Identity = 80/155 (51.61%), Postives = 97/155 (62.58%), Query Frame = 2 Query: 44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAKKRKPPLMKDS 505 ++FDFLGKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D ++ KI Y RAN+ VAI+CNHQR KT M L KI L D R DL A K +MKD+ Sbjct: 525 VEFDFLGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSA-KADAKVMKDA 678
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1M_PANTR (DNA topoisomerase I, mitochondrial OS=Pan troglodytes GN=TOP1MT PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 2.014e-32 Identity = 79/164 (48.17%), Postives = 99/164 (60.37%), Query Frame = 2 Query: 2 TLKVGNVECIPP-----NKLKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGT-GDGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAK 475 +L+V +V+ P + ++FDFLGKD I+Y N V VE PVYK + F K D+LFD+L T LN HL+ELM GLTAKVFRTYNASITL L T + +A KI Y RAN+ VAI+CNHQR T M L KIQ + + R +L RA+ Sbjct: 342 SLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEKPVYKNLQLFMESKGPRDNLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRALTRAEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAELRRAR 505
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1_RAT (DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 3.435e-32 Identity = 80/155 (51.61%), Postives = 96/155 (61.94%), Query Frame = 2 Query: 44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAKKRKPPLMKDS 505 ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQR KT M L KI L D R DL A K +MKD+ Sbjct: 527 VEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARKDLKSA-KADAKVMKDA 680
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1_MOUSE (DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 4.486e-32 Identity = 80/155 (51.61%), Postives = 96/155 (61.94%), Query Frame = 2 Query: 44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAKKRKPPLMKDS 505 ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQR KT M L KI L D R DL A K +MKD+ Sbjct: 527 VEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSA-KADAKVMKDA 680
BLAST of FC932342 vs. ExPASy Swiss-Prot
Match: TOP1_CRIGR (DNA topoisomerase 1 OS=Cricetulus griseus GN=TOP1 PE=2 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 4.486e-32 Identity = 80/155 (51.61%), Postives = 96/155 (61.94%), Query Frame = 2 Query: 44 LKFDFLGKDSIQYVNTVEVELPVYKAIGQFQTGKKQNDDLFDKLDTAKLNAHLKELMPGLTAKVFRTYNASITLDGMLNKGTG-DGDVAVKIDVYQRANKEVAIICNHQRTVSKTHSAQMSRLTDKIQDLNGVLKDLRVDLNRAKKRKPPLMKDS 505 ++FDF GKDSI+Y N V VE V+K + F K+ DDLFD+L+T LN HL++LM GLTAKVFRTYNASITL L + T D +V KI Y RAN+ VAI+CNHQR KT M L KI L D R DL A K +MKD+ Sbjct: 527 VEFDFPGKDSIRYYNKVPVEKRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKELTAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDLKSA-KADAKVMKDA 680 The following BLAST results are available for this feature:
BLAST of FC932342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC932342 ID=FC932342; Name=FC932342; organism=Citrus clementina; type=EST; length=511bpback to top |