FC932349

Overview
NameFC932349
Unique NameFC932349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig641 contig Ccv1_Contig641:54..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932349 vs. ExPASy Swiss-Prot
Match: PSB4_ARATH (Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2)

HSP 1 Score: 325.479 bits (833), Expect = 1.635e-88
Identity = 152/178 (85.39%), Postives = 169/178 (94.94%), Query Frame = 3
Query:  150 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLY 683
            QRT  PYVTGTS+VA+KYKDG+LMA+DMGGSYGST+RYK++ER+K IGKHSLLGASGEISDFQE+LR LDEL L DNMWDDGNSLGPKE+H+YLTRVMYNRRNKF+PLWN+LVLGGVKNG+ YLGMVSMIGV+FED HVATGFGNHLARPILRDEWH +LS+EDGVKLLEKCMRVLLY
Sbjct:   22 QRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEISDFQEILRYLDELTLNDNMWDDGNSLGPKEIHNYLTRVMYNRRNKFNPLWNTLVLGGVKNGKSYLGMVSMIGVSFEDDHVATGFGNHLARPILRDEWHADLSFEDGVKLLEKCMRVLLY 199          
BLAST of FC932349 vs. ExPASy Swiss-Prot
Match: PSB4_BOVIN (Proteasome subunit beta type-4 OS=Bos taurus GN=PSMB4 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.003e-45
Identity = 87/182 (47.80%), Postives = 133/182 (73.08%), Query Frame = 3
Query:  144 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLY 683
            PI RTQ P VTGTSV+ LK++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  PK +HS+LTR MY+RR+K +PLWN++V+GG  +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +  +L+E+CMRVL Y
Sbjct:   42 PITRTQNPMVTGTSVLGLKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPKAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYY 223          
BLAST of FC932349 vs. ExPASy Swiss-Prot
Match: PSB4_XENLA (Proteasome subunit beta type-4 (Fragment) OS=Xenopus laevis GN=psmb4 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.235e-45
Identity = 83/182 (45.60%), Postives = 135/182 (74.18%), Query Frame = 3
Query:  144 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLY 683
            P++ T  P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  + ++++LGASG+ +D+Q L + +D++++ + +  DG++  PK +HS+LTRVMYNRR+K +PLWN++V+GG  NG+ +LG V  +GV +E   +ATGFG +LA+P+LR+  E    LS E+  +L+++CM+VL Y
Sbjct:   20 PVRHTLNPMVTGTSVLGVKFDGGVIIAADMLGSYGSLARFRNISRIMKVNENTILGASGDYADYQYLKQVIDQMVIDEELVGDGHNYSPKAIHSWLTRVMYNRRSKMNPLWNTVVIGGFYNGESFLGYVDKLGVAYEAPTIATGFGAYLAQPLLREVTENKATLSKEEARQLVDRCMKVLYY 201          
BLAST of FC932349 vs. ExPASy Swiss-Prot
Match: PSB4_HUMAN (Proteasome subunit beta type-4 OS=Homo sapiens GN=PSMB4 PE=1 SV=4)

HSP 1 Score: 180.259 bits (456), Expect = 8.494e-45
Identity = 85/182 (46.70%), Postives = 132/182 (72.53%), Query Frame = 3
Query:  144 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLY 683
            PI RTQ P VTGTSV+ +K++ G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +   L+E+CMRVL Y
Sbjct:   42 PITRTQNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYY 223          
BLAST of FC932349 vs. ExPASy Swiss-Prot
Match: PSB4_MOUSE (Proteasome subunit beta type-4 OS=Mus musculus GN=Psmb4 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.109e-44
Identity = 85/182 (46.70%), Postives = 132/182 (72.53%), Query Frame = 3
Query:  144 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLY 683
            PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + +  DG+S  P+ +HS+LTR MY+RR+K +PLWN++V+GG  +G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +  +L+E+CMRVL Y
Sbjct:   42 PITRTQNPMVTGTSVLGVKFDGGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYY 223          
BLAST of FC932349 vs. ExPASy Swiss-Prot
Match: PSB4_RAT (Proteasome subunit beta type-4 OS=Rattus norvegicus GN=Psmb4 PE=1 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.449e-44
Identity = 86/185 (46.49%), Postives = 132/185 (71.35%), Query Frame = 3
Query:  135 PNDPIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLY 683
            P  PI RTQ P VTGTSV+ +K+  G+++AADM GSYGS  R++++ RI  +   ++LGASG+ +DFQ L + L ++++ + ++ DG+S  P+ +HS+LTR MY+RR+K +PLWN+ V+GG   G+ +LG V M+GV +E   +ATG+G +LA+P+LR+  E    LS  +  +L+E+CMRVL Y
Sbjct:   38 PARPITRTQNPMVTGTSVLGVKFDCGVVIAADMLGSYGSLARFRNISRIMRVNDSTMLGASGDYADFQYLKQVLGQMVIDEELFGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTKVIGGYAGGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYY 222          
BLAST of FC932349 vs. ExPASy Swiss-Prot
Match: PSB4_DICDI (Proteasome subunit beta type-4 OS=Dictyostelium discoideum GN=psmB4-1 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.087e-43
Identity = 81/180 (45.00%), Postives = 126/180 (70.00%), Query Frame = 3
Query:  150 QRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHE--NLSYEDGVKLLEKCMRVLLY 683
            Q+T  P VTGTSV+A+KY  G++M +DM  SYGS  R+ S ER+K  G ++++GASGE SDFQ +   L++L+  D+  DDG+ L  +E+ +YL RV+YN+RN+ +PLWN+LV+ G + G+ +LG V ++G  ++D  + TG+G+H+A P+LR    E  N++ E   +L++ C+RVL Y
Sbjct:   35 QKTLDPIVTGTSVIAIKYDKGVVMGSDMLLSYGSLARFNSTERMKKFGGYTIVGASGEYSDFQSITNTLNDLVTDDHCMDDGSKLSSEEIWNYLARVLYNQRNRGNPLWNTLVVMGYQGGKSFLGKVDLVGTCYKDDIITTGYGSHIALPLLRKARDENPNMNLEQAKQLIQDCLRVLFY 214          
BLAST of FC932349 vs. ExPASy Swiss-Prot
Match: PSB4_SCHPO (Probable proteasome subunit beta type-4 OS=Schizosaccharomyces pombe GN=SPBC577.10 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.074e-39
Identity = 82/187 (43.85%), Postives = 122/187 (65.24%), Query Frame = 3
Query:  144 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGV--KNGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILR-----DEWHENLSYEDGVKLLEKCMRVLLY 683
            PIQRT  P VTG+SV+ALK+ DG+++AAD   SYGS  R+  VER+  +G ++++GA G+ISD+Q++ R L++L + +  + DG +L P  +H YL++V+Y RRNK DP WN L++ GV  +N + Y+    + G  +    +ATGF  HLA P+LR     D W + LS E     +++CMRVL Y
Sbjct:   32 PIQRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAFADLRGTTYSAPAIATGFAMHLALPMLRKATDDDRW-KTLSKESARATIDECMRVLFY 217          
BLAST of FC932349 vs. ExPASy Swiss-Prot
Match: PSB4_YEAST (Proteasome component PRE4 OS=Saccharomyces cerevisiae GN=PRE4 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.606e-35
Identity = 73/160 (45.62%), Postives = 112/160 (70.00%), Query Frame = 3
Query:  144 PIQRTQLPYVTGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELI---LYDN-MWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVK-NGQKYLGMVSMIGVNFEDSHVATGFGNHLARPILR 608
            P+  TQ P VTGTSV+++KY +G+++AAD  GSYGS +R+  VER+ P+G ++++G SG+ISD Q + R L +L+    YDN + D   +L P  +  YL  VMY RR+K +PLWN++++ GV+ NG ++L  V+++GV +    +ATGFG H+A P+LR
Sbjct:   30 PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLR 189          
BLAST of FC932349 vs. ExPASy Swiss-Prot
Match: PSB4_DROME (Proteasome subunit beta type-4 OS=Drosophila melanogaster GN=Prosbeta7 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.041e-34
Identity = 73/173 (42.20%), Postives = 115/173 (66.47%), Query Frame = 3
Query:  174 TGTSVVALKYKDGILMAADMGGSYGSTIRYKSVERIKPIGKHSLLGASGEISDFQELLRNLDELILYDNMWDDGNSLGPKELHSYLTRVMYNRRNKFDPLWNSLVLGGVKN-GQKYLGMVSMIGVNFEDSHVATGFGNHLARPILRDEWHENLSYE--DGVKLLEKCMRVLLY 683
            TGTSV+ ++Y  G+++AAD   SYGS  RY+++ER+  + K+ LLG SG+ +D Q + RN+D+ ++ D   DD   + PK L S++TRV+YNRR++ +PL+  +V+GGV N G  YL  V + G ++ED  VATGF  HLA P++R++  ++  +   +  +L+  CM VL Y
Sbjct:   56 TGTSVLGIRYDSGVMLAADTLVSYGSMARYQNIERVFKVNKNILLGGSGDFADIQSIKRNIDQKMIEDQCCDDNIEMKPKSLASWMTRVLYNRRSRMNPLYIDVVVGGVDNEGTPYLANVDLRGRSYEDYVVATGFARHLAVPLVREKKPKDRDFTAVEASELIRTCMEVLYY 228          
The following BLAST results are available for this feature:
BLAST of FC932349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PSB4_ARATH1.635e-8885.39Proteasome subunit beta type-4 OS=Arabidopsis thal... [more]
PSB4_BOVIN1.003e-4547.80Proteasome subunit beta type-4 OS=Bos taurus GN=PS... [more]
PSB4_XENLA2.235e-4545.60Proteasome subunit beta type-4 (Fragment) OS=Xenop... [more]
PSB4_HUMAN8.494e-4546.70Proteasome subunit beta type-4 OS=Homo sapiens GN=... [more]
PSB4_MOUSE1.109e-4446.70Proteasome subunit beta type-4 OS=Mus musculus GN=... [more]
PSB4_RAT1.449e-4446.49Proteasome subunit beta type-4 OS=Rattus norvegicu... [more]
PSB4_DICDI6.087e-4345.00Proteasome subunit beta type-4 OS=Dictyostelium di... [more]
PSB4_SCHPO1.074e-3943.85Probable proteasome subunit beta type-4 OS=Schizos... [more]
PSB4_YEAST1.606e-3545.63Proteasome component PRE4 OS=Saccharomyces cerevis... [more]
PSB4_DROME1.041e-3442.20Proteasome subunit beta type-4 OS=Drosophila melan... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34207F08EF PostHarveN Citrus clementina cDNA clone C34207F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932349 ID=FC932349; Name=FC932349; organism=Citrus clementina; type=EST; length=683bp
ACACAAGGCTTCTCAGTTCTCAGAAGTTAGATCGTGAAGCCTCAGCTGAT
CAGCTTTGCTATTTACTGAGAAAGTGAATCAAATCTCAAAACGAATTAAT
GGAATCGATCCAAGCCAAACAAGGACTTGTCGGCCCTAACGACCCCATTC
AAAGAACCCAGTTACCATATGTGACTGGTACATCTGTTGTTGCGCTGAAG
TACAAAGATGGCATATTAATGGCTGCTGACATGGGAGGTTCCTATGGGTC
AACAATCCGATACAAGAGTGTGGAACGGATTAAACCTATTGGAAAGCATT
CTCTACTGGGTGCCAGTGGAGAAATAAGTGATTTTCAGGAGCTTTTGCGT
AATCTTGATGAGCTTATACTTTATGACAATATGTGGGATGATGGGAACTC
TTTGGGGCCAAAAGAGTTGCACAGCTATTTGACCAGGGTCATGTATAACA
GGCGTAACAAGTTTGATCCATTGTGGAACTCTCTTGTGCTTGGTGGAGTG
AAAAATGGACAGAAATATCTTGGCATGGTATCAATGATAGGAGTGAACTT
TGAGGACAGCCACGTTGCAACTGGGTTTGGGAATCATCTTGCAAGGCCAA
TTCTTCGTGATGAATGGCATGAAAACTTGAGTTATGAAGATGGCGTTAAG
TTGCTGGAAAAGTGCATGCGTGTGCTCCTGTAT
back to top