FC932350

Overview
NameFC932350
Unique NameFC932350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15510 contig Ccv1_Contig15510:5..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932350 vs. ExPASy Swiss-Prot
Match: DECR2_ARATH (Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidopsis thaliana GN=At3g12800 PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 3.554e-80
Identity = 149/200 (74.50%), Postives = 167/200 (83.50%), Query Frame = 2
Query:   77 LESPFKADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFGHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKK-XXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAP 673
            ++SPFK D+++G+VALITGGGSGIGFEIS+QFGKHGAS+AIMGRRKQVLD AVSALRSLGI+A+G EGDVR+QE A++VVE+TF HFGKLDILVNAAAGNFL +AEDLSPNGFRTV+DID+VGTF MCH ALKYLKK             I+NISATLHYTASWYQIH           TRNLALEWG DYDIRVNGIAP
Sbjct:    1 MDSPFKPDVVRGQVALITGGGSGIGFEISSQFGKHGASIAIMGRRKQVLDDAVSALRSLGIQAIGLEGDVRKQEDARRVVEATFQHFGKLDILVNAAAGNFLAAAEDLSPNGFRTVLDIDAVGTFNMCHAALKYLKKGAPGRDSSSGGGSIINISATLHYTASWYQIHVSAAKAAVDATTRNLALEWGTDYDIRVNGIAP 200          
BLAST of FC932350 vs. ExPASy Swiss-Prot
Match: DECR2_MOUSE (Peroxisomal 2,4-dienoyl-CoA reductase OS=Mus musculus GN=Decr2 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.730e-29
Identity = 80/196 (40.82%), Postives = 108/196 (55.10%), Query Frame = 2
Query:   89 FKADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQ-VLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFGHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAP 673
            F  D+L+ KVA ITGGGSGIGF I+  F +HG    I+GR  Q V  AA   + + G + +    DVR        V+     FGK++IL+N AAGNFL  A  LS N F+TV+DID++GTF +   ++ Y K             I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +AP
Sbjct:   21 FCPDLLQDKVAFITGGGSGIGFRIAEIFMRHGCHTVIVGRSLQKVTTAAKKLVAATGKRCLPLSMDVRVPPEVMTAVDQALQEFGKINILINCAAGNFLCPASALSFNAFKTVVDIDTIGTFNV--SSVLYKK-----FFRDHGGVIVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQ-NIRVNSLAP 208          
BLAST of FC932350 vs. ExPASy Swiss-Prot
Match: DECR2_DANRE (Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rerio GN=decr2 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.157e-28
Identity = 77/196 (39.29%), Postives = 102/196 (52.04%), Query Frame = 2
Query:   89 FKADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSL-GIKAVGFEGDVRRQEHAKKVVESTFGHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAP 673
            +  D+L  +VA ITGGGSGIGF I+    +HG    I  R  + +  A   L S  G + +    DVR+ E     V+ T   FG++DIL+N AAGNFL  A  LS N F+TVM+ID++GTF          K             I+NISATL Y     Q+H          +TR+LA+EWG    +RVN +AP
Sbjct:   28 YSPDLLSDQVAFITGGGSGIGFRIAEVLMRHGCDTVIASRNLEKISQAAKKLTSTTGRRCLPIAMDVRQPETILAAVDETLKTFGRVDILINNAAGNFLCPATSLSFNAFKTVMEIDTMGTFNTS-------KVIYDKWFKDHGGSIVNISATLGYRGQALQVHAGSAKAANDAMTRHLAVEWGPS-GVRVNTVAP 215          
BLAST of FC932350 vs. ExPASy Swiss-Prot
Match: DECR2_RAT (Peroxisomal 2,4-dienoyl-CoA reductase OS=Rattus norvegicus GN=Decr2 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.124e-28
Identity = 79/196 (40.31%), Postives = 107/196 (54.59%), Query Frame = 2
Query:   89 FKADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRR-KQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFGHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAP 673
            F  D+L+ KVA ITGGGSGIGF I+  F +HG    I+ R   +V +AA   + + G + +    DVR        V+     FGK+DIL+N AAGNFL  A  LS N F+TV+DID++GTF +    + Y K             I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +AP
Sbjct:   21 FCPDLLQDKVAFITGGGSGIGFRIAEIFMRHGCHTVIVSRSLPRVSEAAKKLVAATGKRCLPLSMDVRVPPAVMAAVDQALKEFGKIDILINCAAGNFLCPASALSFNAFKTVVDIDTLGTFNV--SRVLYEK-----FFRDHGGVIVNITATLSMRGQVLQLHAGAAKAAVDAMTRHLAVEWGPQ-NIRVNSLAP 208          
BLAST of FC932350 vs. ExPASy Swiss-Prot
Match: DECR2_HUMAN (Peroxisomal 2,4-dienoyl-CoA reductase OS=Homo sapiens GN=DECR2 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.567e-27
Identity = 80/196 (40.82%), Postives = 104/196 (53.06%), Query Frame = 2
Query:   89 FKADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRR-KQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFGHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAP 673
            F  D+L+ KVA ITGGGSGIGF I+  F +HG    I  R   +VL AA     + G + +    DVR        V+     FG++DIL+N AAGNFL  A  LS N F+TVMDID+ GTF +    + Y K             I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +AP
Sbjct:   21 FCPDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNV--SRVLYEK-----FFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQ-NIRVNSLAP 208          
BLAST of FC932350 vs. ExPASy Swiss-Prot
Match: DECR2_PONAB (Peroxisomal 2,4-dienoyl-CoA reductase OS=Pongo abelii GN=DECR2 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.673e-27
Identity = 80/196 (40.82%), Postives = 104/196 (53.06%), Query Frame = 2
Query:   89 FKADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRR-KQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFGHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAP 673
            F  D+L+ KVA ITGGGSGIGF I+  F +HG    I  R   +VL AA     + G + +    DVR        V+     FG++DIL+N AAGNFL  A  LS N F+TVMDID+ GTF +    + Y K             I+NI+ATL       Q+H          +TR+LA+EWG   +IRVN +AP
Sbjct:   21 FCPDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAIVAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNV--SRVLYEK-----FFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQ-NIRVNSLAP 208          
BLAST of FC932350 vs. ExPASy Swiss-Prot
Match: FADH_BACSU (Probable 2,4-dienoyl-CoA reductase OS=Bacillus subtilis GN=fadH PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.162e-22
Identity = 62/190 (32.63%), Postives = 98/190 (51.58%), Query Frame = 2
Query:  104 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSLGIKAVGFEGDVRRQEHAKKVVESTFGHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAP 673
            ++ K  +ITGG SG+G  ++ +  + G  V + GR  + L+     +++   +   F+ DVR    A  +++     FG+LD L+N AAGNF+  AE L+PNG++ V++I   GTF     A ++               ILN++AT  + A    +H          +TR LA+EWG+ Y IR N IAP
Sbjct:    1 MEKKAVIITGGSSGMGKAMAKKQAELGWHVMVTGRNHEALEETKKEIQTFEGQVACFQMDVRSDSAASDMIKEAVKAFGRLDALINNAAGNFICPAEKLTPNGWKAVIEIVLNGTFFCSQAAARH------WIDQKQQGVILNMAATYAWGAGAGVVHSAAAKAGVLSLTRTLAVEWGSKYGIRTNAIAP 184          
BLAST of FC932350 vs. ExPASy Swiss-Prot
Match: SPS19_YEAST (Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Saccharomyces cerevisiae GN=SPS19 PE=1 SV=4)

HSP 1 Score: 102.064 bits (253), Expect = 2.862e-21
Identity = 71/207 (34.30%), Postives = 100/207 (48.31%), Query Frame = 2
Query:   68 KMSLESPFKADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRSLG-----IKAVGFEGDVRRQEHAKKVVESTFGHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAP 673
            K   E  ++ D+ KGKVA +TGG   I    +      G   AI+GR ++  + A   +  L      + A+    DVR  E  +  V+ T   FGK+D ++  AAGNF+    +LSPN F++V+DID +G+F      LK LKK            IL +SAT HY    +Q H          + +NLA+E G    IR N IAP
Sbjct:   10 KFVTEGSWRPDLFKGKVAFVTGGAGTICRVQTEALVLLGCKAAIVGRDQERTEQAAKGISQLAKDKDAVLAIA-NVDVRNFEQVENAVKKTVEKFGKIDFVIAGAAGNFVCDFANLSPNAFKSVVDIDLLGSFNTAKACLKELKK--------SKGSILFVSATFHYYGVPFQGHVGAAKAGIDALAKNLAVELG-PLGIRSNCIAP 206          
BLAST of FC932350 vs. ExPASy Swiss-Prot
Match: YXEK_CAEEL (Uncharacterized oxidoreductase F53C11.3 OS=Caenorhabditis elegans GN=F53C11.3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.499e-19
Identity = 69/194 (35.57%), Postives = 97/194 (50.00%), Query Frame = 2
Query:  104 LKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALR-SLGIKAVGFEGDVRRQEHAKK---VVESTFGHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAP 673
            L GKVAL+TGGG+G+G  I+T F   GASVAI  RR  VL+     +R S G     F+ DV+      K    VE   GH    DIL+N AAGNF+++ E LSPN + T++DI   GT  +  E                   +L+I+     + + + +           +T++LA EW A + +R N IAP
Sbjct:   24 LNGKVALVTGGGTGLGKAIATTFAHLGASVAIAARRLDVLEKTADEIRSSTGGVCEPFQMDVKDPAKVAKAFDAVEKKLGH--TPDILINNAAGNFIMATERLSPNAYGTIIDIVLKGTLHVTTEL------GRRCIQQKRGASVLSITTLYAQSGAPFVVPSAVSKAGVENMTKSLASEW-AKHGLRFNAIAP 208          
BLAST of FC932350 vs. ExPASy Swiss-Prot
Match: PECR_MOUSE (Peroxisomal trans-2-enoyl-CoA reductase OS=Mus musculus GN=Pecr PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.968e-19
Identity = 63/206 (30.58%), Postives = 102/206 (49.51%), Query Frame = 2
Query:   80 ESPFKADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALR-----SLGIKAVGFEGDVRRQEHAKKVVESTFGHFGKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHY---TASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAP 673
            +S   A +LK +VA++TGGG+GIG  +S +    G +V I  R+   L AAV  LR     S   +    + ++R++E    +V+ST   +GK++ LVN   G F+   ED++  G+  V++ +  GTF MC E      +            I+NI   L+    TA+    H          +T+++AL W A   +R+N +AP
Sbjct:    8 QSYLAAGLLKNQVAVVTGGGTGIGKAVSRELLHLGCNVVIASRKLDRLTAAVDELRASLPPSSSAEVSAIQCNIRKEEEVSNLVKSTLAKYGKINFLVNNGGGQFMAPVEDITAKGWHAVIETNLTGTFYMCKEVYNSWMR-------EHGGSIVNIIVLLNNGFPTAA----HTGAAREGVYNLTKSMALAW-ASSGVRINCVAP 201          
The following BLAST results are available for this feature:
BLAST of FC932350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
DECR2_ARATH3.554e-8074.50Peroxisomal 2,4-dienoyl-CoA reductase OS=Arabidops... [more]
DECR2_MOUSE3.730e-2940.82Peroxisomal 2,4-dienoyl-CoA reductase OS=Mus muscu... [more]
DECR2_DANRE3.157e-2839.29Peroxisomal 2,4-dienoyl-CoA reductase OS=Danio rer... [more]
DECR2_RAT4.124e-2840.31Peroxisomal 2,4-dienoyl-CoA reductase OS=Rattus no... [more]
DECR2_HUMAN1.567e-2740.82Peroxisomal 2,4-dienoyl-CoA reductase OS=Homo sapi... [more]
DECR2_PONAB2.673e-2740.82Peroxisomal 2,4-dienoyl-CoA reductase OS=Pongo abe... [more]
FADH_BACSU1.162e-2232.63Probable 2,4-dienoyl-CoA reductase OS=Bacillus sub... [more]
SPS19_YEAST2.862e-2134.30Peroxisomal 2,4-dienoyl-CoA reductase SPS19 OS=Sac... [more]
YXEK_CAEEL3.499e-1935.57Uncharacterized oxidoreductase F53C11.3 OS=Caenorh... [more]
PECR_MOUSE5.968e-1930.58Peroxisomal trans-2-enoyl-CoA reductase OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionC34207F09EF PostHarveN Citrus clementina cDNA clone C34207F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932350 ID=FC932350; Name=FC932350; organism=Citrus clementina; type=EST; length=674bp
GAGAAAAAAACAGACACAACACAACCACAAGGACAAGCAGCAAAAGCGGT
CAGATAAAGAAATAAGCAAAATGTCGTTGGAATCTCCGTTCAAGGCCGAT
ATATTGAAAGGCAAAGTCGCTTTGATCACAGGAGGTGGTTCGGGAATTGG
GTTTGAGATATCAACCCAATTCGGTAAACATGGAGCTTCAGTTGCAATCA
TGGGACGTCGCAAGCAAGTCCTTGATGCTGCTGTTTCTGCTCTTCGGTCT
CTTGGAATCAAGGCTGTTGGCTTTGAAGGAGATGTTCGTAGGCAGGAACA
TGCGAAAAAAGTTGTGGAATCAACTTTTGGGCATTTTGGGAAGCTTGACA
TTCTTGTGAATGCTGCGGCCGGCAACTTTCTTGTATCAGCTGAGGATTTG
TCCCCTAATGGGTTTCGAACAGTTATGGATATTGATTCTGTCGGCACATT
CACAATGTGCCATGAAGCACTTAAATATCTTAAAAAGGGTGGACCTGGGA
GAAGCTCAGCTGGTGGTGGATCCATTTTGAACATTAGTGCTACTTTACAT
TATACAGCTTCTTGGTACCAAATACATGTAGCTGCAGCCAAGGCAGCTGT
TGATGCCATTACCAGAAACTTGGCACTGGAATGGGGAGCTGACTATGATA
TTCGAGTCAATGGAATTGCCCCAG
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