FC932358

Overview
NameFC932358
Unique NameFC932358
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC932358 vs. ExPASy Swiss-Prot
Match: SKI35_ARATH (F-box/ankyrin repeat protein SKIP35 OS=Arabidopsis thaliana GN=SKIP35 PE=1 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 7.908e-94
Identity = 177/232 (76.29%), Postives = 192/232 (82.76%), Query Frame = 1 
Query:    1 DVDVDLALGFASHYCKIGTMECLVEEGNAVAFLGPLMRAAERGCMQVVQWFVKRGCRDMDLCLALTAATSSSQVEVAAYLLPHVPQHVLAALSIEILKAAGERSGGSLDGVVFLLHSDFLGDPAATYAVADSIAR-SDDEGVAPDLKVFLREHWSEAAFLDGLKQGDVHYMNLLRILKWGESPICLRDLPGPLRVAITYLPLYRECVKAGGHLLSQG*EGNLSSRERLGGGC 693
            DVDVDLALGFASHYCKIGTM+CLVEEGNA+AFLGPLMRAAERGCMQVVQWFVKRGCRDM+LCLALTAATSS QVEVAAYLLP VP  VL ALSIEILKAAGERSGGSL GV FLL SDFLGD  ATY+VADSIAR S+DE V  DLK FL+EHWSE+AF  G+++    +MN +R+LK GES I LRDLP PLRVAI Y+PLYREC+KA G LLSQ   G L    R   GC
Sbjct:  354 DVDVDLALGFASHYCKIGTMKCLVEEGNAIAFLGPLMRAAERGCMQVVQWFVKRGCRDMELCLALTAATSSCQVEVAAYLLPRVPPPVLTALSIEILKAAGERSGGSLQGVEFLLKSDFLGDSTATYSVADSIARSSEDESVPSDLKSFLQEHWSESAFEKGMRESHDDFMNFMRVLKKGESAISLRDLPAPLRVAIAYMPLYRECMKADGRLLSQRLRGQLVEAVRQLQGC 585
The following BLAST results are available for this feature:
BLAST of FC932358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI35_ARATH7.908e-9476.29F-box/ankyrin repeat protein SKIP35 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionC34207G05EF PostHarveN Citrus clementina cDNA clone C34207G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932358 ID=FC932358; Name=FC932358; organism=Citrus clementina; type=EST; length=696bp
GATGTTGATGTCGATCTGGCCTTGGGTTTTGCTTCACATTATTGCAAGAT
TGGTACAATGGAGTGTCTGGTGGAAGAAGGTAACGCCGTGGCTTTCTTGG
GTCCTTTGATGAGAGCAGCTGAGAGGGGTTGCATGCAGGTTGTCCAGTGG
TTTGTGAAAAGGGGTTGCCGCGATATGGATCTCTGCCTTGCCCTTACAGC
TGCCACTTCCAGTAGCCAAGTTGAAGTTGCTGCCTATCTCCTCCCTCATG
TCCCTCAGCATGTCCTAGCAGCCCTCAGCATTGAGATTCTCAAGGCTGCT
GGTGAAAGGAGTGGTGGTTCTCTTGATGGTGTGGTATTTCTTCTCCATTC
TGATTTCTTAGGTGACCCAGCTGCTACCTATGCAGTTGCAGACAGCATTG
CTAGGTCTGATGATGAGGGTGTTGCTCCTGACCTGAAGGTTTTTCTTCGG
GAGCACTGGTCAGAGGCAGCTTTCTTGGATGGATTAAAGCAAGGGGATGT
CCATTACATGAATCTATTAAGGATTTTGAAGTGGGGTGAATCTCCTATTT
GCTTAAGAGATCTGCCAGGCCCTCTGAGGGTGGCAATTACATACCTGCCA
CTGTATAGAGAGTGTGTCAAGGCAGGTGGTCATTTGCTATCTCAAGGCTA
AGAGGGCAACTTGTCGAGCCGTGAGAGGCTTGGAGGTGGGTGTTGG
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