FC932360

Overview
NameFC932360
Unique NameFC932360
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15130 contig Ccv1_Contig15130:4..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932360 vs. ExPASy Swiss-Prot
Match: RS103_ARATH (40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 7.192e-47
Identity = 86/97 (88.66%), Postives = 94/97 (96.91%), Query Frame = 1
Query:   88 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 378
            MII E NRKEICKYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKS+EYVRETFAWMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP
Sbjct:    1 MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of FC932360 vs. ExPASy Swiss-Prot
Match: RS10_ORYSJ (40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10 PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.733e-46
Identity = 86/97 (88.66%), Postives = 92/97 (94.85%), Query Frame = 1
Query:   88 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 378
            MIIP+KNR EICKYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKS+EYVRETF+W +YYWYLTNDGIE LR YLNLPSEIVPATLKKSA+P
Sbjct:    1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARP 97          
BLAST of FC932360 vs. ExPASy Swiss-Prot
Match: RS101_ARATH (40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.662e-46
Identity = 84/97 (86.60%), Postives = 93/97 (95.88%), Query Frame = 1
Query:   88 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 378
            MII E NR+EICKYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKS+EYVRETFAWMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP
Sbjct:    1 MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of FC932360 vs. ExPASy Swiss-Prot
Match: RS102_ARATH (40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.241e-40
Identity = 79/98 (80.61%), Postives = 89/98 (90.82%), Query Frame = 1
Query:   88 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 378
            MII E NR+EI KYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKS+EYVRETFAWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKK  KP
Sbjct:    1 MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKP 98          
BLAST of FC932360 vs. ExPASy Swiss-Prot
Match: RS10_SPOFR (40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.456e-31
Identity = 62/97 (63.92%), Postives = 81/97 (83.51%), Query Frame = 1
Query:   88 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAK 375
            M++P++NR  I +YLF+EGV  AKKDY+  KHP+++ +PNLQVIK MQS KSR YV+E FAW H+YWYLTN+GIE+LR +L+LP EIVPATLK+S +
Sbjct:    1 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 97          
BLAST of FC932360 vs. ExPASy Swiss-Prot
Match: RS10_LUMRU (40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.586e-30
Identity = 60/97 (61.86%), Postives = 76/97 (78.35%), Query Frame = 1
Query:   88 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 378
            M++ +KNR  I +YLF+EGV  AKKD++L KH EIDVPNL VI+ MQS  SR YV+E F W HYYWYL N+GI++LR +L+LP EIVPATLK+  +P
Sbjct:    1 MLMSKKNRVMIYEYLFKEGVLVAKKDFHLPKHGEIDVPNLHVIRAMQSLVSRGYVKEQFCWRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKRQTRP 97          
BLAST of FC932360 vs. ExPASy Swiss-Prot
Match: RS10_RAT (40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.965e-29
Identity = 60/97 (61.86%), Postives = 78/97 (80.41%), Query Frame = 1
Query:   88 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 369
            M++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
BLAST of FC932360 vs. ExPASy Swiss-Prot
Match: RS10_MOUSE (40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.965e-29
Identity = 60/97 (61.86%), Postives = 78/97 (80.41%), Query Frame = 1
Query:   88 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 369
            M++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
BLAST of FC932360 vs. ExPASy Swiss-Prot
Match: RS10_ICTPU (40S ribosomal protein S10 OS=Ictalurus punctatus GN=rps10 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.965e-29
Identity = 60/100 (60.00%), Postives = 79/100 (79.00%), Query Frame = 1
Query:   88 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 378
            M++P+KNR  I + LF+EGV  AKKD +LAKHPE+   +VPNL V+K MQS KS  YV+E FAW H+YWYLTN+GI++LR +L+LP EIVPATL++  +P
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHLAKHPELADKNVPNLHVMKAMQSLKSCGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRQTRP 100          
BLAST of FC932360 vs. ExPASy Swiss-Prot
Match: RS10_HUMAN (40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.965e-29
Identity = 60/97 (61.86%), Postives = 78/97 (80.41%), Query Frame = 1
Query:   88 MIIPEKNRKEICKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 369
            M++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
The following BLAST results are available for this feature:
BLAST of FC932360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS103_ARATH7.192e-4788.6640S ribosomal protein S10-3 OS=Arabidopsis thalian... [more]
RS10_ORYSJ2.733e-4688.6640S ribosomal protein S10 OS=Oryza sativa subsp. j... [more]
RS101_ARATH4.662e-4686.6040S ribosomal protein S10-1 OS=Arabidopsis thalian... [more]
RS102_ARATH2.241e-4080.6140S ribosomal protein S10-2 OS=Arabidopsis thalian... [more]
RS10_SPOFR1.456e-3163.9240S ribosomal protein S10 OS=Spodoptera frugiperda... [more]
RS10_LUMRU3.586e-3061.8640S ribosomal protein S10 OS=Lumbricus rubellus GN... [more]
RS10_RAT3.965e-2961.8640S ribosomal protein S10 OS=Rattus norvegicus GN=... [more]
RS10_MOUSE3.965e-2961.8640S ribosomal protein S10 OS=Mus musculus GN=Rps10... [more]
RS10_ICTPU3.965e-2960.0040S ribosomal protein S10 OS=Ictalurus punctatus G... [more]
RS10_HUMAN3.965e-2961.8640S ribosomal protein S10 OS=Homo sapiens GN=RPS10... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34207G07EF PostHarveN Citrus clementina cDNA clone C34207G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932360 ID=FC932360; Name=FC932360; organism=Citrus clementina; type=EST; length=694bp
GCCCCTTACATCTTTCCACTGAGACGAGCCATTCGTTCCTCGCGCAGCTT
GACAGAAAGGGCTAAGCTCAATCTTCACTTCGCAACCATGATTATTCCAG
AGAAGAACCGCAAAGAAATCTGCAAGTACCTCTTCCAAGAGGGAGTATGC
TATGCAAAGAAGGATTATAATCTTGCGAAGCACCCAGAAATCGATGTTCC
AAACCTGCAGGTGATTAAGCTGATGCAGAGCTTCAAATCTAGGGAGTATG
TACGTGAGACATTTGCGTGGATGCATTATTATTGGTACCTTACGAATGAT
GGGATTGAGTTTTTGAGGACTTACCTCAATCTTCCATCAGAAATTGTTCC
TGCTACCTTGAAGAAATCCGCTAAGCCAGCTGGTCGCCCGATGGGTGGAC
CTGGTGGTGATCGTCCAAGGGGCCCACCTCGTTTTGATGGAGACCGACCA
AGGTTTGGTGACCGTGAAGGGTACCGTGGTGGTCCTCGTGGTGGTGACTT
TGGTGGTGAGAAAGGTGGAGCCCCTGCTGATTTCCAGCCATCCTTCAGGG
GTTCTGGTGGAAGACCTGGTTTTGGTCGCGGAGGTGGAGGCTATGGTGCA
GCTCCATCAGGTTCAGGATTTCCTTGAAAGTTAGGCCGGTTTGCTTAGTT
CATGTTTGCCCCAAATTAGTGTTTCAGTCTTTAGAACAGTCTAT
back to top