FC932361

Overview
NameFC932361
Unique NameFC932361
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3589 contig Ccv1_Contig3589:1..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932361 vs. ExPASy Swiss-Prot
Match: RS5_CICAR (40S ribosomal protein S5 (Fragment) OS=Cicer arietinum GN=RPS5 PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.437e-90
Identity = 166/186 (89.25%), Postives = 180/186 (96.77%), Query Frame = 1
Query:  127 DPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAQGSSNSYAIKKR 684
            DP+Q   +VKLFNRW+F+DVQ++D+SL DYIGV  +KHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRI+KHAMEIIHLLTDQNPIQVIVDAV+NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARE+AFRNIK+IAECLADELINAA+GSSNSYAIKK+
Sbjct:    3 DPTQ--IEVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGAREAAFRNIKSIAECLADELINAAKGSSNSYAIKKK 186          
BLAST of FC932361 vs. ExPASy Swiss-Prot
Match: RS52_ARATH (40S ribosomal protein S5-2 OS=Arabidopsis thaliana GN=RPS5B PE=1 SV=2)

HSP 1 Score: 330.872 bits (847), Expect = 4.181e-90
Identity = 166/196 (84.69%), Postives = 181/196 (92.35%), Query Frame = 1
Query:   97 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAQGSSNSYAIKKR 684
            MATA    ++       +VKLFNRWT++DV V DISL DYIGVQAAKHAT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+L+TTGARE+AFRNIKTIAECLADELINAA+GSSNSYAIKK+
Sbjct:    1 MATAADVDAEIQQALTNEVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLITTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 196          
BLAST of FC932361 vs. ExPASy Swiss-Prot
Match: RS51_ARATH (40S ribosomal protein S5-1 OS=Arabidopsis thaliana GN=RPS5A PE=1 SV=1)

HSP 1 Score: 327.791 bits (839), Expect = 3.539e-89
Identity = 164/196 (83.67%), Postives = 180/196 (91.84%), Query Frame = 1
Query:   97 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAQGSSNSYAIKKR 684
            MA +    ++   Q   +VKLFNRW+F+DV V DISL DYIGVQ +KHAT+VPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLL+D NPIQVI+DA++NSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI+LLTTGARE+AFRNIKTIAECLADELINAA+GSSNSYAIKK+
Sbjct:    1 MAASAEIDAEIQQQLTNEVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIFLLTTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKK 196          
BLAST of FC932361 vs. ExPASy Swiss-Prot
Match: RS5_HUMAN (40S ribosomal protein S5 OS=Homo sapiens GN=RPS5 PE=1 SV=4)

HSP 1 Score: 295.049 bits (754), Expect = 2.542e-79
Identity = 148/197 (75.13%), Postives = 172/197 (87.31%), Query Frame = 1
Query:  103 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAQGSSNSYAIKKRMRL 693
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELINAA+GSSNSYAIKK+  L
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEL 196          
BLAST of FC932361 vs. ExPASy Swiss-Prot
Match: RS5_BOVIN (40S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=2 SV=3)

HSP 1 Score: 295.049 bits (754), Expect = 2.542e-79
Identity = 148/197 (75.13%), Postives = 172/197 (87.31%), Query Frame = 1
Query:  103 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAQGSSNSYAIKKRMRL 693
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELINAA+GSSNSYAIKK+  L
Sbjct:    6 TAAPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEL 196          
BLAST of FC932361 vs. ExPASy Swiss-Prot
Match: RS5_MOUSE (40S ribosomal protein S5 OS=Mus musculus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 292.352 bits (747), Expect = 1.648e-78
Identity = 143/182 (78.57%), Postives = 165/182 (90.66%), Query Frame = 1
Query:  148 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAQGSSNSYAIKKRMRL 693
            D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+ KRFRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIK IAECLADELINAA+GSSNSYAIKK+  L
Sbjct:   16 DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAAKRFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKNIAECLADELINAAKGSSNSYAIKKKDEL 196          
BLAST of FC932361 vs. ExPASy Swiss-Prot
Match: RS5_RAT (40S ribosomal protein S5 OS=Rattus norvegicus GN=Rps5 PE=2 SV=3)

HSP 1 Score: 288.5 bits (737), Expect = 2.379e-77
Identity = 145/197 (73.60%), Postives = 169/197 (85.79%), Query Frame = 1
Query:  103 TAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAQGSSNSYAIKKRMRL 693
            TA  A ++ P     D+KLF +W+ +DVQ+NDISL DYI V+  K+A Y+PH+AGRY+   FRKAQCPIVERLTNS+MMHGRNNGKKLM VRIVKHA EIIHLLT +NP+QV+V+A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELINA +GSSNSYAIKK+  L
Sbjct:    6 TATPAVAETP-----DIKLFGKWSTDDVQINDISLQDYIAVKE-KYAKYLPHSAGRYAANGFRKAQCPIVERLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINARKGSSNSYAIKKKDEL 196          
BLAST of FC932361 vs. ExPASy Swiss-Prot
Match: RS5_NEUCR (40S ribosomal protein S5 OS=Neurospora crassa GN=rps-5 PE=3 SV=2)

HSP 1 Score: 288.115 bits (736), Expect = 3.108e-77
Identity = 139/181 (76.80%), Postives = 164/181 (90.61%), Query Frame = 1
Query:  151 VKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAQGSSNSYAIKKRMRL 693
            VKLFNRW++EDV++ DISL+DYI +++     Y+PH+AGRY+ KRFRKA CPI+ERLTNSLMMHGRNNGKKLMAVRIV HA EIIHL+TDQNPIQ+ VDA++N GPRED+TRIGSAG VRRQAVD+SPLRRVNQAI LLTTGARE++FRN+K+IAECLA+ELINAA+GSSNSYAIKK+  L
Sbjct:   28 VKLFNRWSYEDVEIRDISLTDYIQIRSP---VYLPHSAGRYAAKRFRKANCPIIERLTNSLMMHGRNNGKKLMAVRIVAHAFEIIHLMTDQNPIQIAVDAIVNCGPREDSTRIGSAGTVRRQAVDVSPLRRVNQAIALLTTGAREASFRNVKSIAECLAEELINAAKGSSNSYAIKKKDEL 205          
BLAST of FC932361 vs. ExPASy Swiss-Prot
Match: RS5A_DROME (40S ribosomal protein S5a OS=Drosophila melanogaster GN=RpS5a PE=1 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 9.997e-76
Identity = 145/199 (72.86%), Postives = 169/199 (84.92%), Query Frame = 1
Query:   97 MATAVVAQSQDPSQPHYDVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAQGSSNSYAIKKRMRL 693
            + T VV+ ++ P     ++KLF RW+ +DV VNDISL DYI V+  K A Y+PH+AGRY+ KRFRKAQCPIVERLT SLMM GRNNGKKLMA RIVKH+ EIIHLLT +NP+Q++V A+INSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+LL TGARE+AFRNIKTIAECLADELINAA+GSSNSYAIKK+  L
Sbjct:   28 LETNVVSTTELP-----EIKLFGRWSCDDVTVNDISLQDYISVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTCSLMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDEL 220          
BLAST of FC932361 vs. ExPASy Swiss-Prot
Match: RS5_PODCA (40S ribosomal protein S5 OS=Podocoryne carnea GN=RPS5 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.105e-74
Identity = 135/182 (74.18%), Postives = 162/182 (89.01%), Query Frame = 1
Query:  148 DVKLFNRWTFEDVQVNDISLSDYIGVQAAKHATYVPHTAGRYSVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDQNPIQVIVDAVINSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAQGSSNSYAIKKRMRL 693
            D+KLF +W  E + ++DISL+DYI V+   HA Y+PHTA RY+VKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIV+H+ EI+HLLT +NP+Q++ +A+ NSGPRED+TRIG AG VRRQAVD++PLRRVNQAI+LL TGARE++FRNIK+IAECLADELINAA+GSSNSYAIKK+  L
Sbjct:   22 DIKLFGKWPLEGLNISDISLTDYIAVKD-NHAVYLPHTAARYAVKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIWLLCTGAREASFRNIKSIAECLADELINAARGSSNSYAIKKKDEL 202          
The following BLAST results are available for this feature:
BLAST of FC932361 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
RS5_CICAR1.437e-9089.2540S ribosomal protein S5 (Fragment) OS=Cicer ariet... [more]
RS52_ARATH4.181e-9084.6940S ribosomal protein S5-2 OS=Arabidopsis thaliana... [more]
RS51_ARATH3.539e-8983.6740S ribosomal protein S5-1 OS=Arabidopsis thaliana... [more]
RS5_HUMAN2.542e-7975.1340S ribosomal protein S5 OS=Homo sapiens GN=RPS5 P... [more]
RS5_BOVIN2.542e-7975.1340S ribosomal protein S5 OS=Bos taurus GN=RPS5 PE=... [more]
RS5_MOUSE1.648e-7878.5740S ribosomal protein S5 OS=Mus musculus GN=Rps5 P... [more]
RS5_RAT2.379e-7773.6040S ribosomal protein S5 OS=Rattus norvegicus GN=R... [more]
RS5_NEUCR3.108e-7776.8040S ribosomal protein S5 OS=Neurospora crassa GN=r... [more]
RS5A_DROME9.997e-7672.8640S ribosomal protein S5a OS=Drosophila melanogast... [more]
RS5_PODCA1.105e-7474.1840S ribosomal protein S5 OS=Podocoryne carnea GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC34207G08EF PostHarveN Citrus clementina cDNA clone C34207G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932361 ID=FC932361; Name=FC932361; organism=Citrus clementina; type=EST; length=713bp
GATCGTACCACTCAGGGAGAACTCAGCGAGCGGCAGCCGATTCTTATTAT
TTTATCTCTCTCGCTCTCCCACTCTCTCAAAGCTCTTCAGGTAAGAATGG
CGACTGCTGTAGTGGCACAATCTCAAGACCCATCACAGCCTCACTACGAT
GTGAAGCTCTTCAATAGGTGGACTTTCGAGGATGTTCAGGTCAATGACAT
CTCGTTGAGTGATTATATTGGCGTGCAAGCGGCCAAGCACGCTACTTATG
TGCCTCACACTGCTGGGAGGTACTCCGTTAAGCGTTTCCGGAAGGCCCAA
TGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCACGGTCGTAA
CAACGGCAAGAAATTGATGGCCGTCAGGATTGTTAAGCATGCCATGGAGA
TCATTCACCTTTTGACTGACCAGAACCCAATTCAAGTCATTGTTGACGCT
GTCATCAACAGTGGTCCAAGGGAAGATGCTACCCGTATTGGATCTGCTGG
TGTTGTTAGGCGTCAGGCTGTGGATATTTCCCCATTGCGCCGTGTGAATC
AAGCGATCTATCTACTCACCACTGGTGCTCGTGAATCTGCTTTTCGTAAC
ATCAAGACTATTGCCGAATGCTTGGCCGATGAACTCATTAATGCTGCCCA
GGGTTCATCTAACAGCTATGCGATCAAGAAGAGGATGAGATTGAGAGAGT
GGCAAGGCCAATC
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