FC932364

Overview
NameFC932364
Unique NameFC932364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10263 contig Ccv1_Contig10263:2..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932364 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.542e-19
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQS 601
            +IINDRETGRSRGFGFVTF+DEKSMRDAIEGMNGQ LDGRNITVNEAQS
Sbjct:   36 KIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQS 84          
BLAST of FC932364 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.997e-19
Identity = 44/49 (89.80%), Postives = 49/49 (100.00%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQS 601
            +IINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQS
Sbjct:   38 KIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQS 86          
BLAST of FC932364 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.997e-19
Identity = 44/49 (89.80%), Postives = 49/49 (100.00%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQS 601
            +IINDRETGRSRGFGFVTF+DEKSM+DAIEGMNGQ+LDGR+ITVNEAQS
Sbjct:   38 KIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQS 86          
BLAST of FC932364 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.227e-18
Identity = 43/49 (87.76%), Postives = 49/49 (100.00%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQS 601
            +IINDRETGRSRGFGFVTF+DEK+M+DAIEGMNGQ+LDGR+ITVNEAQS
Sbjct:   38 KIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQS 86          
BLAST of FC932364 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.357e-17
Identity = 41/49 (83.67%), Postives = 46/49 (93.88%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQS 601
            +IINDRETGRSRGFGFVTF+DEKSM+DAI+ MNG+ LDGR ITVNEAQS
Sbjct:   36 KIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQS 84          
BLAST of FC932364 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.722e-16
Identity = 41/49 (83.67%), Postives = 46/49 (93.88%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQS 601
            +IINDRE+GRSRGFGFVTF+DEK+MRDAIE MNG+ LDGR ITVNEAQS
Sbjct:   36 KIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQS 84          
BLAST of FC932364 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.305e-15
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQS 601
            +II DRETGRSRGFGFVTF  +++MR AIE MNGQ+LDGRNITVNEAQS
Sbjct:   36 KIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQS 84          
BLAST of FC932364 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.706e-15
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQS 601
            ++I DRETGRSRGFGFVTF  E+SM DAIE MNG+ LDGRNITVN+AQS
Sbjct:   38 KVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQS 86          
BLAST of FC932364 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.758e-15
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQS 601
            ++I DRETGRSRGFGFVTF  E SM DAIE MNG+ LDGRNITVN+AQS
Sbjct:   38 KVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQS 86          
BLAST of FC932364 vs. ExPASy Swiss-Prot
Match: GRP1_SORBI (Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14
Identity = 39/49 (79.59%), Postives = 43/49 (87.76%), Query Frame = 2
Query:  455 QIINDRETGRSRGFGFVTFRDEKSMRDAIEGMNGQNLDGRNITVNEAQS 601
            +II DRET RSRGFGFVTF  E++MR AIEGMNG+ LDGRNITVNEAQS
Sbjct:   17 KIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQS 65          
The following BLAST results are available for this feature:
BLAST of FC932364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
GRP1_DAUCA1.542e-1993.88Glycine-rich RNA-binding protein OS=Daucus carota ... [more]
GRP2_SINAL9.997e-1989.80Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRP1_SINAL9.997e-1989.80Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP7_ARATH2.227e-1887.76Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP10_BRANA9.357e-1783.67Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRP8_ARATH2.722e-1683.67Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP_HORVU2.305e-1579.59Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP2_SORBI6.706e-1577.55Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRPA_MAIZE8.758e-1577.55Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP1_SORBI1.951e-1479.59Glycine-rich RNA-binding protein 1 (Fragment) OS=S... [more]
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Properties
Property NameValue
Genbank descriptionC34207G11EF PostHarveN Citrus clementina cDNA clone C34207G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932364 ID=FC932364; Name=FC932364; organism=Citrus clementina; type=EST; length=668bp
GATCCCGCAGCGGTGCTGTCTCTTAGATTTTTCTTGTAATTCCTTCTTAG
TCCCCATTTCAAGTTTTCTCCTAATGGCTTCAGCCGATGTCGAGTTTCGG
TGCTTCGTAGGCGGCCTGGCCTGGGCCACCACTGACAGCTCTCTCCATGA
GGCCTTCAGTGCTTACGGCGATATCCTTGAATCGAAGGTCCGTTTGAACC
AGATCCGACCCGATCCACGATTCGGCTTGTTCTGATCTGTGATTCGTGTG
CTCTGTGATCTGTTTCTGTTACTCTGTTACTGTTCTCTGTTACTACTGTT
ACTCTATTATTACTATGCCTAAATCGGTACGTTCATCTTCATCTTTTTAT
TAAGACGAAGGGCCCGATCGGATTTATTATTATTTTTATTGTTATTAAGT
TTCCAGATCTGAGATGAATTTGCTAAATTATTTTTTTGTTTATCCTCGTT
AATTCAGATTATTAACGATCGCGAGACTGGAAGATCCAGAGGATTTGGAT
TCGTTACCTTCCGCGATGAGAAGTCGATGAGGGACGCAATCGAAGGCATG
AACGGCCAGAATCTGGACGGCCGTAACATAACAGTCAACGAGGCCCAGTC
CCGTGGAAGCGGTGGCGGTGGCGGTGGCGGTTACGGAAGCCGTGGCGGTG
GTGGATATGGAGGTGGTG
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