FC932369

Overview
NameFC932369
Unique NameFC932369
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length390
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15495 contig Ccv1_Contig15495:1..390. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932369 vs. ExPASy Swiss-Prot
Match: PSD13_BOVIN (26S proteasome non-ATPase regulatory subunit 13 OS=Bos taurus GN=PSMD13 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.234e-13
Identity = 36/91 (39.56%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  117 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIISRQYPEKQAAISYL 389
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + + RQ  +   A+S+L
Sbjct:    7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALSFL 97          
BLAST of FC932369 vs. ExPASy Swiss-Prot
Match: PSD13_RAT (26S proteasome non-ATPase regulatory subunit 13 OS=Rattus norvegicus GN=Psmd13 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.749e-13
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  117 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIISRQYPEKQAAISYL 389
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + + RQ  +   A+++L
Sbjct:    7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFL 97          
BLAST of FC932369 vs. ExPASy Swiss-Prot
Match: PSD13_MOUSE (26S proteasome non-ATPase regulatory subunit 13 OS=Mus musculus GN=Psmd13 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.749e-13
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  117 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIISRQYPEKQAAISYL 389
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + + RQ  +   A+++L
Sbjct:    7 FLQQSQSSGPGQAAVWHRLEELYTKKLWHQLTLEVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFL 97          
BLAST of FC932369 vs. ExPASy Swiss-Prot
Match: PSD13_HUMAN (26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens GN=PSMD13 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.690e-13
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  117 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIISRQYPEKQAAISYL 389
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + + RQ  +   A+++L
Sbjct:    7 FLQQSQSSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFL 97          
BLAST of FC932369 vs. ExPASy Swiss-Prot
Match: PSD13_CHICK (26S proteasome non-ATPase regulatory subunit 13 OS=Gallus gallus GN=PSMD13 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.690e-13
Identity = 35/91 (38.46%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  117 YLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIISRQYPEKQAAISYL 389
            +L+  ++  P     ++ L +LY KKLWHQLTL++  FV    F  GD LI+LY NFI++FE ++N L L    + + RQ  +   A+++L
Sbjct:    7 FLQQSQSAGPGQAAVWHRLEELYNKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPTVALTFL 97          
BLAST of FC932369 vs. ExPASy Swiss-Prot
Match: PSD13_DICDI (26S proteasome non-ATPase regulatory subunit 13 OS=Dictyostelium discoideum GN=psmD13 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.573e-11
Identity = 31/83 (37.35%), Postives = 45/83 (54.22%), Query Frame = 3
Query:  111 LQYLESLRNDHPELGEWYNALADLYQKKLWHQLTLKLEQFVAHAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIISRQY 359
            L+YLE L+   P+L +  N + D Y+ KLWHQLT ++E  +          L   Y NFI DFE K+  L L    + ++RQ+
Sbjct:    7 LEYLEHLKKIVPDLSDQINNIKDTYENKLWHQLTKQIEMIIISPQLLEKKELFNFYTNFIRDFENKLRPLSLVEICIAVARQF 89          
The following BLAST results are available for this feature:
BLAST of FC932369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSD13_BOVIN1.234e-1339.5626S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_RAT2.749e-1338.4626S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_MOUSE2.749e-1338.4626S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_HUMAN4.690e-1338.4626S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_CHICK4.690e-1338.4626S proteasome non-ATPase regulatory subunit 13 OS... [more]
PSD13_DICDI2.573e-1137.3526S proteasome non-ATPase regulatory subunit 13 OS... [more]
back to top
Properties
Property NameValue
Genbank descriptionC34207H05EF PostHarveN Citrus clementina cDNA clone C34207H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932369 ID=FC932369; Name=FC932369; organism=Citrus clementina; type=EST; length=390bp
AAACTGAGAGAGAAGGGTTTTTGAGATTGCTCTGATATTATAATAAATAA
ACAGAGAAAAAAAATCATATTTTTCTCTAAATCTTGCACTGTCGCTTCGC
CATGGCAGCTCTTCAGTACTTGGAATCTTTGCGAAACGACCATCCGGAGC
TGGGCGAGTGGTACAATGCTTTGGCAGATCTGTACCAGAAGAAGCTGTGG
CACCAGCTCACCCTCAAGCTCGAACAGTTCGTCGCTCACGCCGTCTTTCA
GGCTGGTGATGCTCTGATTCAGTTGTACCACAACTTCATAACTGATTTTG
AGACAAAGATCAATCTTCTCAAGCTTGCACATTTTGCTGTTATAATTTCT
CGGCAGTATCCTGAGAAGCAAGCTGCAATTAGTTATCTTG
back to top