FC932376

Overview
NameFC932376
Unique NameFC932376
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:13..460. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.640e-36
Identity = 82/106 (77.36%), Postives = 85/106 (80.19%), Query Frame = 2 
Query:  131 MADGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            MAD QE+DKN                RGNGTSMISLIMPPRDQV+RVTKML DE+GTASNIKSRVNRQSVL AITSAQQRLKL NKVPPNGLVLYTGTI TDDGKE
Sbjct:    1 MAD-QESDKNIEIWKIKKLIKGLETARGNGTSMISLIMPPRDQVARVTKMLADEYGTASNIKSRVNRQSVLSAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKE 105
[Close]
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 2.142e-36
Identity = 79/106 (74.53%), Postives = 83/106 (78.30%), Query Frame = 2 
Query:  131 MADGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            M D  + DKN                RGNGTSMISLIMPPRDQVSRVTKMLGDE+GTASNIKSRVNRQSVLGAITSAQQRLKL N+VPPNGLVLYTGTI  +DGKE
Sbjct:    1 MGDKNDDDKNIEIWKIKKLIKSLEAARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASNIKSRVNRQSVLGAITSAQQRLKLYNRVPPNGLVLYTGTIVNEDGKE 106
[Close]
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.535e-34
Identity = 77/102 (75.49%), Postives = 79/102 (77.45%), Query Frame = 2 
Query:  143 QETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            +E D N                RGNGTSMISLIMPPRDQVSRVTKMLGDE+GTASNIKSRVNRQSVL AITSAQQRLKL NKVP NGLVLYTGTI  DDGKE
Sbjct:    3 EEADTNIEIWKIKKLIKGLESARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASNIKSRVNRQSVLSAITSAQQRLKLYNKVPTNGLVLYTGTIVNDDGKE 104
[Close]
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_POLMI (Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.181e-32
Identity = 74/107 (69.16%), Postives = 81/107 (75.70%), Query Frame = 2 
Query:  131 MADGQET-DKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            MA+ + T D+N                RGNGTSMISLI+PP+DQVSRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKL NKVPPNGLV+Y GTI TD+GKE
Sbjct:    1 MAETETTADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQVSRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTDEGKE 107
[Close]
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_XENTR (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus tropicalis GN=etf1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.589e-31
Identity = 70/104 (67.31%), Postives = 77/104 (74.04%), Query Frame = 2 
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKL NKVPPNGLV+Y GTI T++GKE
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKE 107
[Close]
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_XENLA (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus laevis GN=etf1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.589e-31
Identity = 70/104 (67.31%), Postives = 77/104 (74.04%), Query Frame = 2 
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKL NKVPPNGLV+Y GTI T++GKE
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKE 107
[Close]
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_RAT (Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.589e-31
Identity = 70/104 (67.31%), Postives = 77/104 (74.04%), Query Frame = 2 
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKL NKVPPNGLV+Y GTI T++GKE
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKE 107
[Close]
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_RABIT (Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.589e-31
Identity = 70/104 (67.31%), Postives = 77/104 (74.04%), Query Frame = 2 
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKL NKVPPNGLV+Y GTI T++GKE
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKE 107
[Close]
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_PONAB (Eukaryotic peptide chain release factor subunit 1 OS=Pongo abelii GN=ETF1 PE=2 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.589e-31
Identity = 70/104 (67.31%), Postives = 77/104 (74.04%), Query Frame = 2 
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKL NKVPPNGLV+Y GTI T++GKE
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKE 107
[Close]
BLAST of FC932376 vs. ExPASy Swiss-Prot
Match: ERF1_MOUSE (Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4)

HSP 1 Score: 134.806 bits (338), Expect = 1.589e-31
Identity = 70/104 (67.31%), Postives = 77/104 (74.04%), Query Frame = 2 
Query:  137 DGQETDKNXXXXXXXXXXXXXXXXRGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLDNKVPPNGLVLYTGTIGTDDGKE 448
            D    D+N                RGNGTSMISLI+PP+DQ+SRV KML DEFGTASNIKSRVNR SVLGAITS QQRLKL NKVPPNGLV+Y GTI T++GKE
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKE 107
The following BLAST results are available for this feature:
BLAST of FC932376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ERF1Z_ARATH1.640e-3677.36Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1X_ARATH2.142e-3674.53Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH1.535e-3475.49Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1_POLMI4.181e-3269.16Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENTR1.589e-3167.31Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENLA1.589e-3167.31Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RAT1.589e-3167.31Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RABIT1.589e-3167.31Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PONAB1.589e-3167.31Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MOUSE1.589e-3167.31Eukaryotic peptide chain release factor subunit 1 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34207H12EF PostHarveN Citrus clementina cDNA clone C34207H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932376 ID=FC932376; Name=FC932376; organism=Citrus clementina; type=EST; length=448bp
GACTTTTATTCTTATTACATCCTCCCTTCTCCTACGAGTTAAGTAAATTC
CATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCGGTGCTTTTATCA
CTGTTTTAGAGTTACTGTATCCACTTTACAATGGCAGATGGTCAGGAGAC
TGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGATCAAAGCACTTG
AAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTAATCATGCCTCCT
CGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGATGAGTTTGGAAC
TGCTTCAAACATCAAAAGCAGGGTCAATCGTCAATCTGTATTGGGTGCAA
TCACATCTGCTCAGCAAAGATTGAAGCTTGACAACAAGGTCCCTCCCAAT
GGGCTTGTGCTGTACACGGGAACAATTGGTACTGATGATGGGAAGGAA
back to top