FC932377

Overview
NameFC932377
Unique NameFC932377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932377_ssr21 microsatellite FC932377_ssr21:21..30. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11531 contig Ccv1_Contig11531:56..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932377 vs. ExPASy Swiss-Prot
Match: OSBL6_MOUSE (Oxysterol-binding protein-related protein 6 OS=Mus musculus GN=Osbpl6 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 64/138 (46.38%), Postives = 95/138 (68.84%), Query Frame = 3
Query:  300 NYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVDFKLRNKFLGNSID 704
            N W +++  IG D+ S V++PV ++EP + LQ + E MEYS LLD A E +DPY R+V  +++A+S Y +  +R   KPFNPVLGET+E +    G  F +EQVSHHPP+SA H E+++F++  D + +NKF G S++
Sbjct:  595 NLWNILRNNIGKDL-SKVSMPVELNEPLNTLQHLCEEMEYSELLDKASETDDPYERMVLVAAFAVSGYCSTYFRAGSKPFNPVLGETYECIREDKGFRFFSEQVSHHPPISACHCESKNFVFWQDIRWKNKFWGKSME 731          
BLAST of FC932377 vs. ExPASy Swiss-Prot
Match: OSBL6_HUMAN (Oxysterol-binding protein-related protein 6 OS=Homo sapiens GN=OSBPL6 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.545e-28
Identity = 64/138 (46.38%), Postives = 95/138 (68.84%), Query Frame = 3
Query:  300 NYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVDFKLRNKFLGNSID 704
            N W +++  IG D+ S V++PV ++EP + LQ + E MEYS LLD A E +DPY R+V  +++A+S Y +  +R   KPFNPVLGET+E +    G  F +EQVSHHPP+SA H E+++F++  D + +NKF G S++
Sbjct:  570 NLWNILRNNIGKDL-SKVSMPVELNEPLNTLQHLCEEMEYSELLDKASETDDPYERMVLVAAFAVSGYCSTYFRAGSKPFNPVLGETYECIREDKGFRFFSEQVSHHPPISACHCESKNFVFWQDIRWKNKFWGKSME 706          
BLAST of FC932377 vs. ExPASy Swiss-Prot
Match: OSBL7_HUMAN (Oxysterol-binding protein-related protein 7 OS=Homo sapiens GN=OSBPL7 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.667e-28
Identity = 66/136 (48.53%), Postives = 93/136 (68.38%), Query Frame = 3
Query:  306 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVDFKLRNKFLGNSID 704
            W +++  IG D+ S V++PV ++EP + LQR+ E +EYS LLD A    DP  R+VY +++A+S Y +  +R   KPFNPVLGET+E      G  FI+EQVSHHPP+SA HAE+E+F +  D K +NKF G S++
Sbjct:  480 WNILRNNIGKDL-SKVSMPVQLNEPLNTLQRLCEELEYSSLLDQASRIADPCERMVYIAAFAVSAYSSTYHRAGCKPFNPVLGETYECERPDRGFRFISEQVSHHPPISACHAESENFAFWQDMKWKNKFWGKSLE 614          
BLAST of FC932377 vs. ExPASy Swiss-Prot
Match: OSBL3_HUMAN (Oxysterol-binding protein-related protein 3 OS=Homo sapiens GN=OSBPL3 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.308e-27
Identity = 63/136 (46.32%), Postives = 92/136 (67.65%), Query Frame = 3
Query:  306 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVDFKLRNKFLGNSID 704
            W +++  IG D+ S V +PV ++EP + LQR+ E +EYS LLD A +   P  R+VY +++A+S Y +  YR   KPFNPVLGET+E +    G  F +EQVSHHPP+SA HAE+ +F++  D + +NKF G S++
Sbjct:  529 WNILRNNIGKDL-SKVAMPVELNEPLNTLQRLCEELEYSELLDKAAQIPSPLERMVYVAAFAISAYASSYYRAGSKPFNPVLGETYECIREDKGFQFFSEQVSHHPPISACHAESRNFVFWQDVRWKNKFWGKSME 663          
BLAST of FC932377 vs. ExPASy Swiss-Prot
Match: OSBL3_MOUSE (Oxysterol-binding protein-related protein 3 OS=Mus musculus GN=Osbpl3 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.914e-27
Identity = 63/136 (46.32%), Postives = 91/136 (66.91%), Query Frame = 3
Query:  306 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA--YRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAENEHFIYDVDFKLRNKFLGNSID 704
            W +++  IG D+ S V +PV ++EP + LQR+ E +EYS LLD A     P  R+VY +++A+S Y +  +R   KPFNPVLGET+E +    G  F AEQVSHHPP+SA HAE+ +F++  D + +NKF G S++
Sbjct:  497 WSILRNNIGKDL-SKVAMPVELNEPLNTLQRLCEELEYSELLDKASRIPSPLERMVYVAAFAISAYASSYFRAGSKPFNPVLGETYECIRQDKGFQFFAEQVSHHPPISACHAESGNFVFWQDVRWKNKFWGKSME 631          
BLAST of FC932377 vs. ExPASy Swiss-Prot
Match: OSB8_DICDI (Oxysterol-binding protein 8 OS=Dictyostelium discoideum GN=osbH PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.107e-26
Identity = 66/171 (38.60%), Postives = 103/171 (60.23%), Query Frame = 3
Query:  192 NGLLGY-EGLEVVNPEGSTEDAEDEARRGRWKQEERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRRAWKPFNPVLGETFEMVN-HGGVTFIAEQVSHHPPMSAGHAENEHFIYDVDFKLRNKFLGNS 698
            +G L Y +GL   N     E++ D   +G  + E+R    K +  Y+G D+ SL++LPV+I EP S LQ M+E ++Y+ LL  A + +  ++ L Y +++  ++Y    R  KPFNP+LGETFE+V+  G   F+AEQVSHHPP+      +E +   ++  L++KF GNS
Sbjct:    3 SGALNYMKGLVGTNENLQVEESGDN--KGDIEPEQRKGLLKQLSSYVGKDITSLISLPVWIFEPVSFLQVMSEPLQYNALLSKASKQDSEFLCLAYLAAFNCALYSTAVRTRKPFNPILGETFEIVDKKGEFRFLAEQVSHHPPIGVSETISEDYTLQLETLLKSKFYGNS 171          
BLAST of FC932377 vs. ExPASy Swiss-Prot
Match: YB35_SCHPO (Oxysterol-binding protein homolog C2F12.05c OS=Schizosaccharomyces pombe GN=SPBC2F12.05c PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.224e-25
Identity = 61/135 (45.19%), Postives = 90/135 (66.67%), Query Frame = 3
Query:  306 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFA-YRRAWKPFNPVLGETFEMVN-HGGVTFIAEQVSHHPPMSAGHAENEHFIYDVDFKLRNKFLGNSID 704
            W +++  IG D+  + TLPV  +EP S+LQR+AE MEY+ LLD A   +DPY R++Y +++A S Y +   R  KPFNP+LGET+E  +   G  FI EQVSHHPP+ A ++E+ ++ Y  +  +++KF G S D
Sbjct:  939 WGILKGMIGKDMTKM-TLPVSFNEPTSLLQRVAEDMEYTELLDQASHNKDPYQRILYVAAFAASEYASTLNRVAKPFNPLLGETYEFCHPQRGFRFIVEQVSHHPPVGAAYSESANWKYYGESSVKSKFYGKSFD 1072          
BLAST of FC932377 vs. ExPASy Swiss-Prot
Match: OSB11_DICDI (Oxysterol-binding protein 11 OS=Dictyostelium discoideum GN=osbK PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.686e-23
Identity = 53/140 (37.86%), Postives = 83/140 (59.29%), Query Frame = 3
Query:  288 EERDNYWKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALSIYFAYRRAWKPFNPVLGETFEMVN-HGGVTFIAEQVSHHPPMSAGHAENEHFIYDVDFKLRNKFLGNSID 704
            E++ + WK +   +G D  SLV+LPV+  EP +VL+   E + +  L++ A  C D   RL+Y +++ ++++ +Y R  KPFNP+LGETFE ++  G      EQVSHHPP+      +E F    +  +  KF GNS+D
Sbjct:   88 EDKKSLWKKVGGLVGKDPMSLVSLPVYFFEPLTVLECQLEPLRFVELIEKASTCSDSIDRLMYLTAFNIAVFSSYTRTAKPFNPLLGETFEYIDKQGRYKSFCEQVSHHPPIGIAQTTSEIFDLQQESWITTKFWGNSLD 227          
BLAST of FC932377 vs. ExPASy Swiss-Prot
Match: OSBL1_MOUSE (Oxysterol-binding protein-related protein 1 OS=Mus musculus GN=Osbpl1a PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 58/137 (42.34%), Postives = 87/137 (63.50%), Query Frame = 3
Query:  306 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVDFKLRNKFLGNSID 704
            W +++K IG ++ S +T+PV  +EP S LQR+ E ME+++L+  A    DP  R+   +++A+S +   + R  KPFNP+LGET+E+V    G   I+EQVSHHPP+SA HAE  N  FI+      + KF G S++
Sbjct:  550 WSILRKCIGMEL-SKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLSDPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVE 685          
BLAST of FC932377 vs. ExPASy Swiss-Prot
Match: OSBL1_HUMAN (Oxysterol-binding protein-related protein 1 OS=Homo sapiens GN=OSBPL1A PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 58/137 (42.34%), Postives = 87/137 (63.50%), Query Frame = 3
Query:  306 WKMMQKYIGADVQSLVTLPVFISEPNSVLQRMAELMEYSHLLDLADECEDPYMRLVYASSWALS-IYFAYRRAWKPFNPVLGETFEMVNHG-GVTFIAEQVSHHPPMSAGHAE--NEHFIYDVDFKLRNKFLGNSID 704
            W +++K IG ++ S +T+PV  +EP S LQR+ E ME+++L+  A    DP  R+   +++A+S +   + R  KPFNP+LGET+E+V    G   I+EQVSHHPP+SA HAE  N  FI+      + KF G S++
Sbjct:  550 WSILRKCIGMEL-SKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSLSDPVERMQCVAAFAVSAVASQWERTGKPFNPLLGETYELVRDDLGFRLISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVE 685          
The following BLAST results are available for this feature:
BLAST of FC932377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
OSBL6_MOUSE1.545e-2846.38Oxysterol-binding protein-related protein 6 OS=Mus... [more]
OSBL6_HUMAN1.545e-2846.38Oxysterol-binding protein-related protein 6 OS=Hom... [more]
OSBL7_HUMAN7.667e-2848.53Oxysterol-binding protein-related protein 7 OS=Hom... [more]
OSBL3_HUMAN1.308e-2746.32Oxysterol-binding protein-related protein 3 OS=Hom... [more]
OSBL3_MOUSE2.914e-2746.32Oxysterol-binding protein-related protein 3 OS=Mus... [more]
OSB8_DICDI1.107e-2638.60Oxysterol-binding protein 8 OS=Dictyostelium disco... [more]
YB35_SCHPO1.224e-2545.19Oxysterol-binding protein homolog C2F12.05c OS=Sch... [more]
OSB11_DICDI5.686e-2337.86Oxysterol-binding protein 11 OS=Dictyostelium disc... [more]
OSBL1_MOUSE2.822e-2242.34Oxysterol-binding protein-related protein 1 OS=Mus... [more]
OSBL1_HUMAN2.822e-2242.34Oxysterol-binding protein-related protein 1 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionC34208A01EF PostHarveN Citrus clementina cDNA clone C34208A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932377 ID=FC932377; Name=FC932377; organism=Citrus clementina; type=EST; length=706bp
GAGGCGCCCCGATTAAAACGTCTCTCTCTCTATTCTTTCTAAGCTACGTA
TTCATTCGATAGCTGCGAGTATTTTCTCCTGAGATTGTTAATTGAGACAT
GACTTCCGATGGATCTAAGCAAGGCGGCGGTTTCTTCGCCTCCATCGCCG
CCGGTTGGTCGACTATCGGCTCCGCCATGAGTAAATCGGTCAACGGTTTA
TTGGGCTATGAAGGGCTGGAAGTTGTTAATCCTGAAGGGAGCACGGAAGA
TGCTGAAGATGAAGCAAGAAGAGGAAGATGGAAACAGGAGGAAAGGGACA
ATTACTGGAAGATGATGCAAAAGTATATAGGTGCTGATGTTCAATCGTTG
GTGACTCTTCCTGTATTTATTTCAGAGCCAAATTCAGTGCTGCAGAGAAT
GGCAGAGTTGATGGAGTACTCCCACCTTCTGGATCTGGCAGATGAATGCG
AGGATCCATACATGAGATTGGTATATGCTTCATCATGGGCTTTATCAATC
TACTTTGCCTATCGACGGGCCTGGAAGCCATTTAATCCAGTTCTTGGTGA
AACTTTTGAAATGGTTAATCATGGTGGTGTTACATTTATAGCTGAACAAG
TTAGTCATCACCCCCCAATGAGTGCTGGTCATGCCGAAAATGAGCACTTC
ATTTATGATGTNGACTTCAAGTTGAGAAACAAATTTTTAGGAAACTCGAT
TGATGT
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