FC932390

Overview
NameFC932390
Unique NameFC932390
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length730
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932390 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 348.591 bits (893), Expect = 2.032e-95
Identity = 171/196 (87.24%), Postives = 184/196 (93.88%), Query Frame = 2
Query:   89 MSQESFIYSFVARGTMILAEYTEFTGNFPAIAAQCLQRLPSSNN-KFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGGKADTAIAKSLNKEFGPLMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWXSNMKIK 673
            M QESFIYSFVARGTMILAEYTEFTGNFP+IAAQCLQ+LPSS+N KFTYNCDHHTFNFLVEDGYAYCVVAK+S+SKQISIAFLER++ADFKKRYGGGKA TAIAKSLNKEFGP+MKEHM YI+DHAEEIEKLIKVKAQVSEVKSIMLENIDKA+DRGEN+  L DKTENLR QAQ YKK GTQ+RRK+W  NMKIK
Sbjct:    1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMKIK 196          
BLAST of FC932390 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 289.271 bits (739), Expect = 1.463e-77
Identity = 137/195 (70.26%), Postives = 163/195 (83.59%), Query Frame = 2
Query:   89 MSQESFIYSFVARGTMILAEYTEFTGNFPAIAAQCLQRLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGGKADTAIAKSLNKEFGPLMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWXSNMKIK 673
            M Q++ IYSFVARGT+IL EYTEF GNF A+AAQCLQ+LPSSNNKFTYNCD HTFN+LVE+G+ YCVVA ESV +QI +AFLER++ DF KRYGGGKA TA A SLN+EFG  +KEHM+Y +DH +EI KL KVKAQV+EVK +M+ENI+K +DRGE I+ L DKTENLR QAQ ++  GT+IRRKMW  NMKIK
Sbjct:   66 MGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIK 260          
BLAST of FC932390 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.559e-77
Identity = 136/195 (69.74%), Postives = 163/195 (83.59%), Query Frame = 2
Query:   89 MSQESFIYSFVARGTMILAEYTEFTGNFPAIAAQCLQRLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGGKADTAIAKSLNKEFGPLMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWXSNMKIK 673
            M+Q+S IYSFVARGT+IL E+T+F GNF +IAAQCLQ+LPSSNNKFTYNCD HTFN+LVEDG+ YCVVA +S  +QI ++FLER++ DF KRYGGGKA TA A SLNKEFG  +KEHM+Y +DH +EI KL KVKAQVSEVK +M+ENI+K +DRGE I+ L DKTENLR QAQ ++  GTQ+RRKMW  NMKIK
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIK 195          
BLAST of FC932390 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 286.189 bits (731), Expect = 1.238e-76
Identity = 136/195 (69.74%), Postives = 163/195 (83.59%), Query Frame = 2
Query:   89 MSQESFIYSFVARGTMILAEYTEFTGNFPAIAAQCLQRLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGGKADTAIAKSLNKEFGPLMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWXSNMKIK 673
            M+Q+S IYSFVARGT+IL E+T+F GNF +IAAQCLQ+LPSSNNKFTYNCD HTFN+LVE+G+ YCVVA +S  +QI +AFLER++ DF KRYGGGKA TA A SLNKEFG  +KEHM+Y +DH +EI KL KVKAQVSEVK +M+ENI+K +DRGE I+ L DKTENLR QAQ ++  GTQ+RRKMW  NMKIK
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIK 195          
BLAST of FC932390 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 281.952 bits (720), Expect = 2.336e-75
Identity = 133/195 (68.21%), Postives = 160/195 (82.05%), Query Frame = 2
Query:   89 MSQESFIYSFVARGTMILAEYTEFTGNFPAIAAQCLQRLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGGKADTAIAKSLNKEFGPLMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWXSNMKIK 673
            M Q+S IYSFVARGT+ILAEYTEF GNF ++AAQCLQ+LPSSNNKFTYNCD HTFN+L ++G+ YCVV  ES  +QI +AFLER++ DF KRYGGGKA TA A SLNKEFG  +KEHM+Y  DH EEI KL KVKAQV+EVK +M+ENI+K +DRGE I+ L DKTENLR QAQ ++  GT+++RK+W  NMKIK
Sbjct:    1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIK 195          
BLAST of FC932390 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.347e-59
Identity = 114/195 (58.46%), Postives = 143/195 (73.33%), Query Frame = 2
Query:   89 MSQESFIYSFVARGTMILAEYTEFTGNFPAIAAQCLQRLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGGKADTAIAKSLNKEFGPLMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWXSNMKIK 673
            M+Q+S  YSF+ARGT+IL E+T+F GNF ++AAQ L+ LPSSNNKFTYNCD HTFN LVE+G+ YCVVA +S  ++I +AFLER++ DF KRYGG KA T  A SLNKEFG  +KEHM+Y +DH +EI  L K KAQVSEVKS+M+ENI+K + RG   + L         Q QA+    TQ++RK W  NMKIK
Sbjct:    1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEMLGSS----ESQPQAFYIKRTQMKRKKWFQNMKIK 191          
BLAST of FC932390 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.594e-58
Identity = 106/214 (49.53%), Postives = 156/214 (72.90%), Query Frame = 2
Query:   89 MSQESFIYSFVARGTMILAEYTEFTGNFPAIAAQCLQRLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGG-KADT------------------AIAKSLNKEFGPLMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWXSNMKIK 673
            MSQ+  IYSFVA+GT++LAE+T ++GNF  IA QCLQ+LP++++K+TY+CD HTFNFLV++G+ + VVA ES  + +   FLER++ DFKKRY    K D                   ++A +L++EFGP++KEHM+Y + H EE+ KL K+KAQ++EVK IM++NI+K +DRGE I+ L DKTENL+ QA ++++ G Q+RRKMW  ++++K
Sbjct:    1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMK 214          
BLAST of FC932390 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 61/190 (32.11%), Postives = 112/190 (58.95%), Query Frame = 2
Query:  101 SFIYSFVARGTMILAEYTEFTGNFPAIAAQCLQRLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGGKADTAIAKSLNKEFGPLMKEHMKYIIDHAEEIEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWXSNMKI 670
            + +++ VARGT ILA++    GNF  +  Q L ++PS NNK TY+  ++ F+++ +D   Y  +  +   +  + +FL  ++  F+  Y G +A TA+  ++N EF  ++   +K+  ++ + ++K+++ +AQV E+K IM+ NID    RGE ++ L DKTENL + +  +K     + R M   N+K+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKHHSEN-KSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIKL 189          
BLAST of FC932390 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 1.063e-27
Identity = 63/192 (32.81%), Postives = 111/192 (57.81%), Query Frame = 2
Query:  101 SFIYSFVARGTMILAEYTEFTGNFPAIAAQCLQRLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGGKADTAIAKSLNKEFGPLMKEHMKYIIDHAEE--IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWXSNMKI 670
            + +++ VARGT ILA++    GNF  +  Q L ++PS NNK TY+  ++ F+++ +D   Y  +  +   +  +  FL  ++  F+  Y G +A TA+  ++N EF  ++   +K+   H+E   ++K+++ +AQV E+K IM+ NID    RGE ++ L DKTENL + +  +K     + R M   N+K+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKH---HSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKL 189          
BLAST of FC932390 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.063e-27
Identity = 63/192 (32.81%), Postives = 111/192 (57.81%), Query Frame = 2
Query:  101 SFIYSFVARGTMILAEYTEFTGNFPAIAAQCLQRLPSSNNKFTYNCDHHTFNFLVEDGYAYCVVAKESVSKQISIAFLERMRADFKKRYGGGKADTAIAKSLNKEFGPLMKEHMKYIIDHAEE--IEKLIKVKAQVSEVKSIMLENIDKAVDRGENIQNLADKTENLREQAQAYKKAGTQIRRKMWXSNMKI 670
            + +++ VARGT ILA++    GNF  +  Q L ++PS NNK TY+  ++ F+++ +D   Y  +  +   +  +  FL  ++  F+  Y G +A TA+  ++N EF  ++   +K+   H+E   ++K+++ +AQV E+K IM+ NID    RGE ++ L DKTENL + +  +K     + R M   N+K+
Sbjct:    2 AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTALPYAMNSEFSSVLAAQLKH---HSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKL 189          
The following BLAST results are available for this feature:
BLAST of FC932390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
VA724_ARATH2.032e-9587.24Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA725_ARATH1.463e-7770.26Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA721_ARATH5.559e-7769.74Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA722_ARATH1.238e-7669.74Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA726_ARATH2.336e-7568.21Putative vesicle-associated membrane protein 726 O... [more]
VA723_ARATH2.347e-5958.46Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA727_ARATH2.594e-5849.53Vesicle-associated membrane protein 727 OS=Arabido... [more]
VAMP7_MOUSE6.233e-2832.11Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_HUMAN1.063e-2732.81Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_BOVIN1.063e-2732.81Vesicle-associated membrane protein 7 OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionC34208B02EF PostHarveN Citrus clementina cDNA clone C34208B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932390 ID=FC932390; Name=FC932390; organism=Citrus clementina; type=EST; length=730bp
GACCAGTCTCTTTTTTGTCTGATCGTGTTTCCCCTCTCTCTTCTTCTAAA
CCGAGTGGAGGCCGAGCCGTGACTCAGTAGCAATTCAAATGAGTCAGGAA
TCGTTCATATACAGCTTCGTGGCACGTGGCACGATGATATTGGCGGAGTA
CACCGAGTTCACTGGCAACTTCCCGGCGATTGCAGCTCAGTGCTTGCAGA
GGCTGCCTTCTTCTAACAACAAGTTCACTTACAATTGCGACCACCACACT
TTCAACTTCCTCGTTGAAGATGGTTACGCCTACTGCGTTGTTGCCAAAGA
ATCTGTTAGCAAGCAGATCTCTATTGCTTTTTTGGAGCGTATGAGAGCAG
ACTTTAAGAAACGGTATGGCGGTGGTAAAGCAGATACTGCTATTGCCAAG
AGTCTTAACAAGGAATTTGGGCCACTTATGAAAGAGCACATGAAATATAT
CATTGACCACGCCGAAGAGATTGAAAAGCTAATAAAAGTAAAGGCTCAAG
TTTCAGAAGTCAAAAGCATAATGTTGGAGAATATCGACAAGGCTGTGGAC
AGAGGTGAAAACATTCAGAATCTTGCCGACAAAACCGAAAACTTGCGTGA
GCAGGCCCAGGCGTACAAGAAAGCGGGAACTCAAATCCGGCGTAAAATGT
GGTNATCAAACATGAAGATAAAGTTAGTCGTTCTCGGAATCTTGCTAATT
CTAGTCCTCATAATATGGCTTTCTGTTTGC
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