FC932391

Overview
NameFC932391
Unique NameFC932391
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932391 vs. ExPASy Swiss-Prot
Match: RING4_ARATH (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.741e-48
Identity = 101/170 (59.41%), Postives = 117/170 (68.82%), Query Frame = 3
Query:  159 STDDIVDTTPFLXXXXXXXXXXXXXXXXX---IRRQGLREAARFLRHASSRRTMREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSRNERPNMPLGLWIVGYAMQCVLHMVCVCVEYKXXXXXXVSAFGGAEEGNLNSGNTRGDSGEYVSLA 659
            ++D I+DTTPFL                     RRQGLREAARFLRHA SRR MREPSM+VRETAAEQLEERQSDWAYSKPVV LDI+WNLAFVA+  +V++LSR+E+PNMPL +W+VGY +QC LHM CVCVEY+          GG       SG T   S +YVSLA
Sbjct:   28 NSDGIIDTTPFLPPTVTRTISVDEESNPIHRSARRQGLREAARFLRHAGSRRMMREPSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEYRRRRRRRHPEDGG------GSGLTNSSSQQYVSLA 191          
BLAST of FC932391 vs. ExPASy Swiss-Prot
Match: RING1_ARATH (E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.291e-43
Identity = 87/145 (60.00%), Postives = 107/145 (73.79%), Query Frame = 3
Query:  129 ATAMSTSTNQSTDDIVDTTPFLXXXXXXXXXXXXXXXXX--IRRQGLREAARFLRHASSRRTMREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSRNERPNMPLGLWIVGYAMQCVLHMVCVCVEYK 557
            ++ +  S++ S+ D +D  P L                   +RRQGLREAARFL  ASS R MREPSM+VRE AAEQLEERQSDWAYSKPVVVLDI+WNLAFV+VA +++V+SR E P MPL +W++GYA+QCVLHMVCVCVEY+
Sbjct:   10 SSLIPASSSSSSSDAIDPAPLLFNGDDNEGNNGGGGGERRSVRRQGLREAARFLSRASSGRVMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYR 154          
BLAST of FC932391 vs. ExPASy Swiss-Prot
Match: RING2_ARATH (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.864e-42
Identity = 87/145 (60.00%), Postives = 106/145 (73.10%), Query Frame = 3
Query:  246 IRRQGLREAARFLRHASS-RRTMREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSRNERPNMPLGLWIVGYAMQCVLHMVCVCVEYKXXXXXXVSAFGGAEEGNLNSGNTRGDSGEYVSLAINWRKR 677
            +RRQGLREAAR LRHASS R  MREPSM+VRE AAEQLEERQSDWAYSKPVVVLD +WNLAFV VA +V+VLS +E PNMPL +WI+GY +QC++HMVCVCVEY+                + +S ++  D  E + L+ N  +R
Sbjct:   24 VRRQGLREAARLLRHASSGRMMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSRNSDER 168          
The following BLAST results are available for this feature:
BLAST of FC932391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RING4_ARATH1.741e-4859.41E3 ubiquitin-protein ligase At4g11680 OS=Arabidops... [more]
RING1_ARATH1.291e-4360.00E3 ubiquitin-protein ligase At1g12760 OS=Arabidops... [more]
RING2_ARATH1.864e-4260.00E3 ubiquitin-protein ligase At1g63170 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC34208B03EF PostHarveN Citrus clementina cDNA clone C34208B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932391 ID=FC932391; Name=FC932391; organism=Citrus clementina; type=EST; length=701bp
GACCCCAAGCCCTAATACAATCAAATCAATCAGTAAAAAATTTCAGCCTA
ATTCCATACCATACCAATTGCTCCCAATTTTAAATTTAAATTTACCAAAA
ATTCCAAAATTCCAAAATTCCTGAAATTGCTACCGCAATGTCTACATCGA
CAAACCAATCCACGGACGACATCGTCGACACGACGCCGTTTCTATCCTCT
AACAGCTCCCACGACGACAGCACTCACAGTCAGAGCCGCCGATCCATCAG
GAGACAGGGCCTCCGCGAGGCTGCCCGATTCCTTCGGCACGCCAGCAGCC
GTCGCACGATGCGGGAGCCGTCGATGATGGTGCGGGAAACGGCGGCGGAG
CAGTTAGAGGAGCGCCAGAGCGACTGGGCGTATTCGAAGCCCGTGGTGGT
TCTCGACATTATCTGGAATCTGGCTTTCGTGGCGGTGGCCTTCTCGGTTA
TGGTATTGAGCCGAAATGAGCGGCCTAATATGCCGCTCGGGCTGTGGATT
GTTGGGTACGCTATGCAATGCGTTTTGCATATGGTTTGTGTGTGCGTTGA
GTATAAACGGAGGAGGAGACGGAGAGTTTCGGCGTTTGGTGGGGCCGAGG
AAGGGAATTTGAATTCGGGGAACACCAGAGGCGATTCGGGGGAGTATGTT
TCTTTAGCAATCAATTGGAGGAAGAGGGAACGAGCAGTGTTGCAAAACAT
C
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