FC932392

Overview
NameFC932392
Unique NameFC932392
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932392 vs. ExPASy Swiss-Prot
Match: RFS6_ARATH (Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2)

HSP 1 Score: 415.616 bits (1067), Expect = 2.822e-116
Identity = 190/217 (87.56%), Postives = 206/217 (94.93%), Query Frame = 3
Query:    6 ENVYKFYNELHGYLASAGIDGVKVDVQCILETLGAGLGGRVALTRQYHQALDASVARNFPDNGCIACMSHNTDALYCSKQTAIVRASDDFYPRDPTSHTIHIAAVAYNSVFLGEIMRPDWDMFHSLHPAAEYHGSARAISGGPIYVSDAPGKHNFELLKKLVLPDGSILRGRLPGRPTRDCLFSDPARDRVSLLKIWNMNKYTGVLGVYNCQGAAWN 656
            + VYKFYNELH YLA AG+DGVKVDVQC+LETLG GLGGRV LTRQ+HQALD+SVA+NFPDNGCIACMSHNTDALYCSKQ A++RASDDFYPRDP SHTIHIA+VAYNSVFLGE M+PDWDMFHS+HPAAEYH SARAISGGP+YVSD+PGKHNFELL+KLVLPDGSILR RLPGRPTRDCLF+DPARD VSLLKIWNMNKYTGVLGVYNCQGAAW+
Sbjct:  359 KKVYKFYNELHSYLADAGVDGVKVDVQCVLETLGGGLGGRVELTRQFHQALDSSVAKNFPDNGCIACMSHNTDALYCSKQAAVIRASDDFYPRDPVSHTIHIASVAYNSVFLGEFMQPDWDMFHSVHPAAEYHASARAISGGPLYVSDSPGKHNFELLRKLVLPDGSILRARLPGRPTRDCLFADPARDGVSLLKIWNMNKYTGVLGVYNCQGAAWS 575          

HSP 2 Score: 25.0238 bits (53), Expect = 2.822e-116
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 2
Query:  659 TERKNTFHETHSDA 700
            TERKN FH+T +D+
Sbjct:  577 TERKNIFHQTKTDS 590          
BLAST of FC932392 vs. ExPASy Swiss-Prot
Match: RFS2_ARATH (Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2)

HSP 1 Score: 375.555 bits (963), Expect = 1.462e-103
Identity = 174/230 (75.65%), Postives = 198/230 (86.09%), Query Frame = 3
Query:    6 ENVYKFYNELHGYLASAGIDGVKVDVQCILETLGAGLGGRVALTRQYHQALDASVARNFPDNGCIACMSHNTDALYCSKQTAIVRASDDFYPRDPTSHTIHIAAVAYNSVFLGEIMRPDWDMFHSLHPAAEYHGSARAISGGPIYVSDAPGKHNFELLKKLVLPDGSILRGRLPGRPTRDCLFSDPARDRVSLLKIWNMNKYTGVLGVYNCQGAAWNK--LKGRTRSTKP 689
            + V+ FYNELH YLAS GIDGVKVDVQ I+ETLGAGLGGRV+LTR Y QAL+AS+ARNF DNGCI+CM HNTD LY +KQTAIVRASDDFYPRDP SHTIHIA+VAYNS+FLGE M+PDWDMFHSLHP AEYH +ARA+ G  IYVSD PG HNF+LL+KLVLPDGS+LR +LPGRPTRDCLF+DPARD +SLLKIWNMNK+TG++GV+NCQGA W K   K +   T P
Sbjct:  361 KKVFNFYNELHSYLASCGIDGVKVDVQNIIETLGAGLGGRVSLTRSYQQALEASIARNFTDNGCISCMCHNTDGLYSAKQTAIVRASDDFYPRDPASHTIHIASVAYNSLFLGEFMQPDWDMFHSLHPTAEYHAAARAVGGCAIYVSDKPGNHNFDLLRKLVLPDGSVLRAKLPGRPTRDCLFADPARDGISLLKIWNMNKFTGIVGVFNCQGAGWCKETKKNQIHDTSP 590          
BLAST of FC932392 vs. ExPASy Swiss-Prot
Match: RFS1_ARATH (Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 3.488e-97
Identity = 161/222 (72.52%), Postives = 191/222 (86.04%), Query Frame = 3
Query:    6 ENVYKFYNELHGYLASAGIDGVKVDVQCILETLGAGLGGRVALTRQYHQALDASVARNFPDNGCIACMSHNTDALYCSKQTAIVRASDDFYPRDPTSHTIHIAAVAYNSVFLGEIMRPDWDMFHSLHPAAEYHGSARAISGGPIYVSDAPGKHNFELLKKLVLPDGSILRGRLPGRPTRDCLFSDPARDRVSLLKIWNMNKYTGVLGVYNCQGAAWNKLKGR 671
            E V+ FYN+LH YLAS G+DGVKVDVQ ILETLGAG GGRV L ++YHQAL+AS++RNFPDNG I+CMSHNTD LY +K+TA++RASDDF+PRDP SHTIHIA+VAYN++FLGE M+PDWDMFHSLHP AEYH +ARA+ G  IYVSD PG+H+F LL+KLVL DGSILR +LPGRPT DC FSDP RD  SLLKIWN+N++TGV+GV+NCQGA W K + R
Sbjct:  365 EKVFSFYNDLHSYLASVGVDGVKVDVQNILETLGAGHGGRVKLAKKYHQALEASISRNFPDNGIISCMSHNTDGLYSAKKTAVIRASDDFWPRDPASHTIHIASVAYNTLFLGEFMQPDWDMFHSLHPMAEYHAAARAVGGCAIYVSDKPGQHDFNLLRKLVLRDGSILRAKLPGRPTSDCFFSDPVRDNKSLLKIWNLNEFTGVIGVFNCQGAGWCKNEKR 586          
BLAST of FC932392 vs. ExPASy Swiss-Prot
Match: RFS5_ARATH (Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 7.597e-60
Identity = 114/221 (51.58%), Postives = 148/221 (66.97%), Query Frame = 3
Query:   18 KFYNELHGYLASAGIDGVKVDVQCILETLGAGLGGRVALTRQYHQALDASVARNFPDNGCIACMSHNTDALYCSKQT-AIVRASDDFYPRDPTSHT--------IHIAAVAYNSVFLGEIMRPDWDMFHSLHPAAEYHGSARAISGGPIYVSDAPGKHNFELLKKLVLPDGSILRGRLPGRPTRDCLFSDPARDRVSLLKIWNMNKYTGVLGVYNCQGAAW 653
            +FY  LH +L +AGIDGVKVDV  ILE L    GGRV L + Y +AL +SV ++F  NG IA M H  D ++   +  ++ R  DDF+  DP+            H+   AYNS+++G  ++PDWDMF S HP AE+H ++RAISGGPIY+SD  GKH+F+LLK+LVLP+GSILR      PTRD LF DP  D  ++LKIWN+NKYTGV+G +NCQG  W
Sbjct:  393 EFYEGLHSHLQNAGIDGVKVDVIHILEMLCQKYGGRVDLAKAYFKALTSSVNKHFNGNGVIASMEHCNDFMFLGTEAISLGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYNSLWMGNFIQPDWDMFQSTHPCAEFHAASRAISGGPIYISDCVGKHDFDLLKRLVLPNGSILRCEYYALPTRDRLFEDPLHDGKTMLKIWNLNKYTGVIGAFNCQGGGW 613          
BLAST of FC932392 vs. ExPASy Swiss-Prot
Match: RFS_PEA (Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.924e-59
Identity = 114/230 (49.57%), Postives = 150/230 (65.22%), Query Frame = 3
Query:   18 KFYNELHGYLASAGIDGVKVDVQCILETLGAGLGGRVALTRQYHQALDASVARNFPDNGCIACMSHNTDA-LYCSKQTAIVRASDDFYPRDPTSHT--------IHIAAVAYNSVFLGEIMRPDWDMFHSLHPAAEYHGSARAISGGPIYVSDAPGKHNFELLKKLVLPDGSILRGRLPGRPTRDCLFSDPARDRVSLLKIWNMNKYTGVLGVYNCQGAAWNKLKGRTRS 680
            + ++ +H +L SAGIDGVKVDV  +LE L    GGRV L + Y++AL +SV ++F  NG IA M H  D  L  ++  ++ R  DDF+  DP+            H+   AYNS+++G  + PDWDMF S HP AE+H ++RAISGGP+YVSD  G HNF+LLK  VLPDGSILR +    PTRDCLF DP  +  ++LKIWN+NKY GVLG++NCQG  W     R +S
Sbjct:  406 EMFDGIHSHLESAGIDGVKVDVIHLLELLSEEYGGRVELAKAYYKALTSSVNKHFKGNGVIASMEHCNDFFLLGTEAISLGRVGDDFWCCDPSGDPNGTYWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSTHPCAEFHAASRAISGGPVYVSDCVGNHNFKLLKSFVLPDGSILRCQHYALPTRDCLFEDPLHNGKTMLKIWNLNKYAGVLGLFNCQGGGWCPETRRNKS 635          
BLAST of FC932392 vs. ExPASy Swiss-Prot
Match: RFS_ORYSJ (Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.027e-56
Identity = 108/223 (48.43%), Postives = 145/223 (65.02%), Query Frame = 3
Query:   18 KFYNELHGYLASAGIDGVKVDVQCILETLGAGLGGRVALTRQYHQALDASVARNFPDNGCIACMSHNTD-ALYCSKQTAIVRASDDFYPRDPTSHT--------IHIAAVAYNSVFLGEIMRPDWDMFHSLHPAAEYHGSARAISGGPIYVSDAPGKHNFELLKKLVLPDGSILRGRLPGRPTRDCLFSDPARDRVSLLKIWNMNKYTGVLGVYNCQGAAWNK 659
            + Y  LH +L ++GIDGVKVDV  +LE +    GGRV L + Y   L  SV R+F  NG IA M H  D  L  ++  A+ R  DDF+  DP+            H+   AYNS+++G  + PDWDMF S HP A +H ++RA+SGGP+YVSDA G H+F+LL++L LPDG+ILR      PTRDCLF+DP  D  ++LKIWN+NK++GVLG +NCQG  W++
Sbjct:  391 ELYEGLHSHLQASGIDGVKVDVIHLLEMVCEEYGGRVELAKAYFAGLTESVRRHFNGNGVIASMEHCNDFMLLGTEAVALGRVGDDFWCTDPSGDPDGTFWLQGCHMVHCAYNSLWMGAFIHPDWDMFQSTHPCAAFHAASRAVSGGPVYVSDAVGCHDFDLLRRLALPDGTILRCERYALPTRDCLFADPLHDGKTMLKIWNVNKFSGVLGAFNCQGGGWSR 613          
BLAST of FC932392 vs. ExPASy Swiss-Prot
Match: STSYN_PEA (Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.610e-55
Identity = 105/229 (45.85%), Postives = 147/229 (64.19%), Query Frame = 3
Query:   18 KFYNELHGYLASAGIDGVKVDVQCILETLGAGLGGRVALTRQYHQALDASVARNFPDNGCIACMSHNTDALYC-SKQTAIVRASDDFYPRDPTSHT--------IHIAAVAYNSVFLGEIMRPDWDMFHSLHPAAEYHGSARAISGGPIYVSDAPGKHNFELLKKLVLPDGSILRGRLPGRPTRDCLFSDPARDRVSLLKIWNMNKYTGVLGVYNCQGAAWNKLKGRTR 677
            + Y+ +H YLA +GI GVKVDV   LE +    GGRV L + Y++ L  S+ +NF  NG IA M H  D  +  +KQ ++ R  DDF+ +DP            +H+   +YNS+++G++++PDWDMF S H  A++H  +RAI GGPIYVSD  G H+F+L+KKLV PDG+I +      PTRDCLF +P  D  ++LKIWN NKY GV+G +NCQGA W+ +  + R
Sbjct:  461 ELYDSMHSYLAESGITGVKVDVIHSLEYVCDEYGGRVDLAKVYYEGLTKSIVKNFNGNGMIASMQHCNDFFFLGTKQISMGRVGDDFWFQDPNGDPMGSFWLQGVHMIHCSYNSLWMGQMIQPDWDMFQSDHVCAKFHAGSRAICGGPIYVSDNVGSHDFDLIKKLVFPDGTIPKCIYFPLPTRDCLFKNPLFDHTTVLKIWNFNKYGGVIGAFNCQGAGWDPIMQKFR 689          
BLAST of FC932392 vs. ExPASy Swiss-Prot
Match: RFS4_ARATH (Probable galactinol--sucrose galactosyltransferase 4 OS=Arabidopsis thaliana GN=RFS4 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 4.178e-50
Identity = 102/235 (43.40%), Postives = 146/235 (62.13%), Query Frame = 3
Query:   15 YKFYNELHGYLASAGIDGVKVDVQCILETLGAGLGGRVALTRQYHQALDASVARNFPDNGCIACMSHNTDALY-CSKQTAIVRASDDFYPRDPTSHT--------IHIAAVAYNSVFLGEIMRPDWDMFHSLHPAAEYHGSARAISGGPIYVSDAPGK--HNFELLKKLVLPDGSILRGRLPGRPTRDCLFSDPARDRVSLLKIWNMNKYTGVLGVYNCQGAAWNKLKGRTRSTK 686
            ++FY+ +H YLAS G+ G K+DV   LE+L    GGRV L + Y+  L  S+ +NF     IA M    +  +  +KQ +I R  DDF+ +DP            +H+   +YNS+++G++++PDWDMF S H  AEYH ++RAI GGP+Y+SD  GK  HNF+L+KKL   DG+I R      PTRD LF +P  D+ S+LKI+N NK+ GV+G +NCQGA W+  + R +  K
Sbjct:  476 HEFYDSMHSYLASVGVTGAKIDVFQTLESLAEEHGGRVELAKAYYDGLTESMIKNFNGTDVIASMQQCNEFFFLATKQISIGRVGDDFWWQDPYGDPQGVYWLQGVHMIHCSYNSIWMGQMIQPDWDMFQSDHVCAEYHAASRAICGGPVYLSDHLGKASHNFDLIKKLAFFDGTIPRCVHYALPTRDSLFKNPLFDKESILKIFNFNKFGGVIGTFNCQGAGWSPEEHRFKGYK 710          
BLAST of FC932392 vs. ExPASy Swiss-Prot
Match: AGAL_SULSO (Alpha-galactosidase OS=Sulfolobus solfataricus GN=galS PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 77/212 (36.32%), Postives = 108/212 (50.94%), Query Frame = 3
Query:    6 ENVYKFYNELHGYLASAGIDGVKVDVQCILETLGAGLGGRVALTRQYHQALDASVARNFPDNGCIACMSHNTDALYCSK-QTAIVRASDDFYPRDPTSHTIHIAAVAYNSVFLGEIMRPDWDMFHSLHPAAEYHGSARAISGGPIYVSDA-PGKHNFELLKKLVLPDGSILRGRLPGRPTRDCLFSDPARDRVSLLKIWNMNKYTGVLGVYN 635
            E+   FY    G +     D VKVD Q ++  +       +A +R    AL  SV ++      I CMS N +  YC+   + ++R S D+ P       +HI   AYNS+    I+ PD+DMF S  P A+ H  AR  SGGPIY++D  P + N ELL+  VLP+G ++R   P   T D LF DP R+RV LLK+    K    +  +N
Sbjct:  344 EDAIGFYKAFDGNILR-DFDLVKVDNQWVIHAIYDSFPIGLA-SRNIQIALQYSVGKDV-----INCMSMNPEN-YCNYFYSNVMRNSIDYVPFWKDGTKLHIMFNAYNSLLTSHIVYPDYDMFMSYDPYAKVHLVARVFSGGPIYITDRHPERTNIELLRMAVLPNGEVIRVDEPALITEDLLFKDPLRERV-LLKLKGKVKGYNAIAFFN 546          
The following BLAST results are available for this feature:
BLAST of FC932392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RFS6_ARATH2.822e-11687.56Probable galactinol--sucrose galactosyltransferase... [more]
RFS2_ARATH1.462e-10375.65Probable galactinol--sucrose galactosyltransferase... [more]
RFS1_ARATH3.488e-9772.52Probable galactinol--sucrose galactosyltransferase... [more]
RFS5_ARATH7.597e-6051.58Probable galactinol--sucrose galactosyltransferase... [more]
RFS_PEA4.924e-5949.57Galactinol--sucrose galactosyltransferase OS=Pisum... [more]
RFS_ORYSJ1.027e-5648.43Galactinol--sucrose galactosyltransferase OS=Oryza... [more]
STSYN_PEA9.610e-5545.85Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 S... [more]
RFS4_ARATH4.178e-5043.40Probable galactinol--sucrose galactosyltransferase... [more]
AGAL_SULSO1.072e-2136.32Alpha-galactosidase OS=Sulfolobus solfataricus GN=... [more]
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Properties
Property NameValue
Genbank descriptionC34208B04EF PostHarveN Citrus clementina cDNA clone C34208B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932392 ID=FC932392; Name=FC932392; organism=Citrus clementina; type=EST; length=704bp
AATCCGAAAACGTGTACAAGTTTTACAACGAGTTGCACGGCTATCTGGCG
TCTGCGGGTATAGACGGTGTTAAGGTGGATGTCCAGTGCATATTGGAGAC
GCTTGGTGCTGGCTTAGGTGGCAGGGTTGCGTTGACCAGACAGTATCATC
AAGCGCTTGATGCGTCGGTTGCCAGGAACTTCCCTGATAATGGGTGCATT
GCGTGCATGAGTCACAATACTGATGCACTCTACTGCTCAAAACAAACTGC
TATAGTGAGAGCATCAGATGATTTCTACCCACGTGATCCGACATCACACA
CCATTCATATTGCAGCTGTCGCATACAACAGTGTGTTCTTGGGAGAAATC
ATGCGGCCTGATTGGGACATGTTCCACTCCCTTCATCCAGCTGCTGAGTA
TCACGGATCGGCCCGTGCTATAAGTGGTGGGCCCATTTACGTCAGTGATG
CGCCCGGGAAGCACAACTTTGAGCTGCTAAAGAAATTAGTGCTGCCTGAT
GGGTCAATTCTTCGAGGACGCTTGCCTGGGCGGCCCACACGCGATTGCCT
CTTCTCGGACCCAGCCCGTGATCGTGTCAGCTTGTTGAAGATATGGAACA
TGAACAAGTACACAGGGGTGCTGGGTGTTTACAATTGCCAAGGAGCGGCT
TGGAACAAACTGAAAGGAAGAACACGTTCCACGAAACCCACAGTGATGCA
TAAC
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