FC932395

Overview
NameFC932395
Unique NameFC932395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932395 vs. ExPASy Swiss-Prot
Match: RL17_ASPFU (60S ribosomal protein L17 OS=Aspergillus fumigatus GN=rpl17 PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.267e-76
Identity = 148/185 (80.00%), Postives = 158/185 (85.41%), Query Frame = 3
Query:   75 RYAAQEISEAKSARARGSYLRVSFKNTRETAQAVNGMKLSKALAFLENVTNKTMAVPMRRYAGSTGRTAQGKQFGVSKARWPVKSAEHIIDLLKNAEANADGKGLDTSALIIKRIQVNQAPKGRRRTYRAHGRTNPYMTNPCHIELILTEAAEEVKKAS---TDKQVRLSSRQRGTQIRRALIEA 620
            RYAAQ+I  AKSARARGSYLRVSFKNTRETAQA+NGMKL +ALAFLENV NKT  VP RRYAGS GRTAQGKQ+GVSKARWPVKSA+ ++DLLKNAEANAD KGLDT  LI+K IQVNQAPKGRRRTYRAHGR NPYMTNPCHIELILTE  E V+KA      +   LSSRQRG QIRRALIEA
Sbjct:   10 RYAAQDIPAAKSARARGSYLRVSFKNTRETAQAINGMKLQRALAFLENVKNKTEVVPFRRYAGSIGRTAQGKQWGVSKARWPVKSAQFLLDLLKNAEANADTKGLDTGNLIVKHIQVNQAPKGRRRTYRAHGRINPYMTNPCHIELILTEGEETVQKAPQVVKKEGAHLSSRQRGAQIRRALIEA 194          
BLAST of FC932395 vs. ExPASy Swiss-Prot
Match: RL17_NEUCR (60S ribosomal protein L17 OS=Neurospora crassa GN=rpl-17 PE=3 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.039e-70
Identity = 136/186 (73.12%), Postives = 152/186 (81.72%), Query Frame = 3
Query:   69 MARYAAQEISEAKSARARGSYLRVSFKNTRETAQAVNGMKLSKALAFLENVTNKTMAVPMRRYAGSTGRTAQGKQFGVSKARWPVKSAEHIIDLLKNAEANADGKGLDTSALIIKRIQVNQAPKGRRRTYRAHGRTNPYMTNPCHIELILTEAAEEVKK--ASTDKQVRLSSRQRGTQIRRALIEA 620
            M RYAA EI+ AKSAR+RGSYLRVSFKNTRETAQA+NG KL +A  FLENV  K  AVPMRRYAG TGR AQGKQFGVS+ARWP KSAE ++ LLKNAEANAD KGLDT  L++K IQVNQAPK RRRTYRAHGR NPYM+NPCHIELILTEA E V+K  A   ++  LSSRQRG ++RRA+  A
Sbjct:    1 MVRYAATEIAPAKSARSRGSYLRVSFKNTRETAQAINGWKLQRAQKFLENVLEKKEAVPMRRYAGGTGRAAQGKQFGVSRARWPAKSAEFLLGLLKNAEANADAKGLDTGNLVVKHIQVNQAPKQRRRTYRAHGRINPYMSNPCHIELILTEADEVVQKSEAVVREEAHLSSRQRGARVRRAITAA 186          
BLAST of FC932395 vs. ExPASy Swiss-Prot
Match: RL17_DEBHA (60S ribosomal protein L17 OS=Debaryomyces hansenii GN=RPL17 PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.007e-57
Identity = 110/174 (63.22%), Postives = 131/174 (75.29%), Query Frame = 3
Query:   69 MARYAAQEISEAKSARARGSYLRVSFKNTRETAQAVNGMKLSKALAFLENVTNKTMAVPMRRYAGSTGRTAQGKQFGVSKARWPVKSAEHIIDLLKNAEANADGKGLDTSALIIKRIQVNQAPKGRRRTYRAHGRTNPYMTNPCHIELILTEAAEEVKKASTDKQVRLSSRQRG 590
            M RYAA   + AKSA ARGSYLRVS+KNTRETAQA++G KL +A  +L+ V +   A+P RR+  S GRT QGK+FGV+KARWP KS   I DLL+N +ANA+ KGLD S L +  IQVNQAPK RRRTYRAHGR N Y ++PCHIELILTE  E V+KA   K+VRL+ RQRG
Sbjct:    1 MVRYAATSANPAKSASARGSYLRVSYKNTRETAQAISGWKLERAQKYLDQVLDHQRAIPFRRFNSSIGRTGQGKEFGVTKARWPAKSVNFIKDLLRNGQANAESKGLDASKLKVSHIQVNQAPKQRRRTYRAHGRINAYQSSPCHIELILTEENEAVEKADDSKKVRLNVRQRG 174          
BLAST of FC932395 vs. ExPASy Swiss-Prot
Match: RL17A_YEAST (60S ribosomal protein L17-A OS=Saccharomyces cerevisiae GN=RPL17A PE=1 SV=4)

HSP 1 Score: 218.394 bits (555), Expect = 3.245e-56
Identity = 110/174 (63.22%), Postives = 132/174 (75.86%), Query Frame = 3
Query:   69 MARYAAQEISEAKSARARGSYLRVSFKNTRETAQAVNGMKLSKALAFLENVTNKTMAVPMRRYAGSTGRTAQGKQFGVSKARWPVKSAEHIIDLLKNAEANADGKGLDTSALIIKRIQVNQAPKGRRRTYRAHGRTNPYMTNPCHIELILTEAAEEVKKASTDKQVRLSSRQRG 590
            MARY A   + AKSA ARGSYLRVSFKNTRETAQA+NG +L+KA  +LE V +   A+P RR+  S GRTAQGK+FGV+KARWP KS + +  LL+NA ANA+ KGLD + L +  IQVNQAPK RRRTYRAHGR N Y ++P HIEL++TE  E V KA+  K VRL+SRQRG
Sbjct:    1 MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVTKARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEEAVAKAAEKKVVRLTSRQRG 174          
BLAST of FC932395 vs. ExPASy Swiss-Prot
Match: RL17B_YEAST (60S ribosomal protein L17-B OS=Saccharomyces cerevisiae GN=RPL17B PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 7.230e-56
Identity = 109/174 (62.64%), Postives = 132/174 (75.86%), Query Frame = 3
Query:   69 MARYAAQEISEAKSARARGSYLRVSFKNTRETAQAVNGMKLSKALAFLENVTNKTMAVPMRRYAGSTGRTAQGKQFGVSKARWPVKSAEHIIDLLKNAEANADGKGLDTSALIIKRIQVNQAPKGRRRTYRAHGRTNPYMTNPCHIELILTEAAEEVKKASTDKQVRLSSRQRG 590
            MARY A   + AKSA ARGSYLRVSFKNTRETAQA+NG +L+KA  +L+ V +   A+P RR+  S GRTAQGK+FGV+KARWP KS + +  LL+NA ANA+ KGLD + L +  IQVNQAPK RRRTYRAHGR N Y ++P HIEL++TE  E V KA+  K VRL+SRQRG
Sbjct:    1 MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLDQVLDHQRAIPFRRFNSSIGRTAQGKEFGVTKARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVTEKEEAVAKAAEKKVVRLTSRQRG 174          
BLAST of FC932395 vs. ExPASy Swiss-Prot
Match: RL17_YARLI (60S ribosomal protein L17 OS=Yarrowia lipolytica GN=RPL17 PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.747e-55
Identity = 105/174 (60.34%), Postives = 129/174 (74.14%), Query Frame = 3
Query:   69 MARYAAQEISEAKSARARGSYLRVSFKNTRETAQAVNGMKLSKALAFLENVTNKTMAVPMRRYAGSTGRTAQGKQFGVSKARWPVKSAEHIIDLLKNAEANADGKGLDTSALIIKRIQVNQAPKGRRRTYRAHGRTNPYMTNPCHIELILTEAAEEVKKASTDKQVRLSSRQRG 590
            M RY+ Q +   K+A ARG+YLR SFKNT E A A+ G  L KALA+L+ VT+   A+P R++AGS GRT QGK+FGV+KARWPVKS + + DLL+NA+ANA+ KGLD   L+I  IQVNQAPK RRRTYRAHGR N Y ++P HIELIL+E AEE+ KA       +SSRQRG
Sbjct:    1 MTRYSVQSVDPTKTASARGAYLRTSFKNTYEVAGAIRGWNLQKALAYLDQVTDHKRAIPFRKHAGSIGRTGQGKEFGVTKARWPVKSIKFVQDLLQNAQANAETKGLDKETLVISHIQVNQAPKQRRRTYRAHGRINAYQSSPSHIELILSEPAEEIAKAKETSLAHISSRQRG 174          
BLAST of FC932395 vs. ExPASy Swiss-Prot
Match: RL17A_SCHPO (60S ribosomal protein L17-A OS=Schizosaccharomyces pombe GN=rpl17a PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.002e-51
Identity = 105/188 (55.85%), Postives = 128/188 (68.09%), Query Frame = 3
Query:   69 MARYAAQEISEAKSARARGSYLRVSFKNTRETAQAVNGMKLSKALAFLENVTNKTMAVPMRRYAGSTGRTAQGKQFGVSKARWPVKSAEHIIDLLKNAEANADGKGLDTSALIIKRIQVNQAPKGRRRTYRAHGRTNPYMTNPCHIELILTEAAEEVKKASTDKQVRLSSRQ----RGTQIRRALIEA 620
            M RY+A    E K A+ARG+YLR  FKN+RE A  +NGM L KA  FL+NV     AVP RR+ G  GRTAQGK+FGV++ARWPVKS +   DLLKNAEANA+ KGLD   LIIK +QVN APK RRRTYRAHGR   Y+++P HIE+I+ E  E V KA+ D   R+S +Q    R    R+A+  A
Sbjct:    1 MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEEEEAVPKAN-DTVSRVSLKQGAKARNLAARKAITAA 187          
BLAST of FC932395 vs. ExPASy Swiss-Prot
Match: RL17B_SCHPO (60S ribosomal protein L17-B OS=Schizosaccharomyces pombe GN=rpl17b PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.145e-51
Identity = 105/188 (55.85%), Postives = 127/188 (67.55%), Query Frame = 3
Query:   69 MARYAAQEISEAKSARARGSYLRVSFKNTRETAQAVNGMKLSKALAFLENVTNKTMAVPMRRYAGSTGRTAQGKQFGVSKARWPVKSAEHIIDLLKNAEANADGKGLDTSALIIKRIQVNQAPKGRRRTYRAHGRTNPYMTNPCHIELILTEAAEEVKKASTDKQVRLSSRQ----RGTQIRRALIEA 620
            M RY+A    E K A+ARG+YLR  FKN+RE A  +NGM L KA  FL+NV     AVP RR+ G  GRTAQGK+FGV++ARWPVKS     DLLKNAEANA+ KGLD   LIIK +QVN APK RRRTYRAHGR   Y+++P HIE+I+ E  E V KA+ D   R+S +Q    R    R+A+  A
Sbjct:    1 MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVTQARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEEEEAVPKAN-DTVSRVSLKQGAKARNLAARKAITSA 187          
BLAST of FC932395 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.460e-48
Identity = 94/159 (59.12%), Postives = 119/159 (74.84%), Query Frame = 3
Query:   69 MARYAAQEISEAKSARARGSYLRVSFKNTRETAQAVNGMKLSKALAFLENVTNKTMAVPMRRYAGSTGRTAQGKQFGVSKARWPVKSAEHIIDLLKNAEANADGKGLDTSALIIKRIQVNQAPKGRRRTYRAHGRTNPYMTNPCHIELILTEAAEEVKK 545
            M RY+    +  KS ++RGS LRV FKNTRETAQA+ GM + KA  +L++VT K   VP RRY G  GR AQ KQ+G ++ RWP KSAE ++ +LKNAE+NA+ KGLD  +L+I+ IQVN+APK RRRTYRAHGR NPYM++PCHIE+ILTE  + V K
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159          
BLAST of FC932395 vs. ExPASy Swiss-Prot
Match: RL17_MOUSE (60S ribosomal protein L17 OS=Mus musculus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 1.460e-48
Identity = 94/159 (59.12%), Postives = 119/159 (74.84%), Query Frame = 3
Query:   69 MARYAAQEISEAKSARARGSYLRVSFKNTRETAQAVNGMKLSKALAFLENVTNKTMAVPMRRYAGSTGRTAQGKQFGVSKARWPVKSAEHIIDLLKNAEANADGKGLDTSALIIKRIQVNQAPKGRRRTYRAHGRTNPYMTNPCHIELILTEAAEEVKK 545
            M RY+    +  KS ++RGS LRV FKNTRETAQA+ GM + KA  +L++VT K   VP RRY G  GR AQ KQ+G ++ RWP KSAE ++ +LKNAE+NA+ KGLD  +L+I+ IQVN+APK RRRTYRAHGR NPYM++PCHIE+ILTE  + V K
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILTEKEQIVPK 159          
The following BLAST results are available for this feature:
BLAST of FC932395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
RL17_ASPFU1.267e-7680.0060S ribosomal protein L17 OS=Aspergillus fumigatus... [more]
RL17_NEUCR1.039e-7073.1260S ribosomal protein L17 OS=Neurospora crassa GN=... [more]
RL17_DEBHA5.007e-5763.2260S ribosomal protein L17 OS=Debaryomyces hansenii... [more]
RL17A_YEAST3.245e-5663.2260S ribosomal protein L17-A OS=Saccharomyces cerev... [more]
RL17B_YEAST7.230e-5662.6460S ribosomal protein L17-B OS=Saccharomyces cerev... [more]
RL17_YARLI2.747e-5560.3460S ribosomal protein L17 OS=Yarrowia lipolytica G... [more]
RL17A_SCHPO7.002e-5155.8560S ribosomal protein L17-A OS=Schizosaccharomyces... [more]
RL17B_SCHPO9.145e-5155.8560S ribosomal protein L17-B OS=Schizosaccharomyces... [more]
RL17_RAT1.460e-4859.1260S ribosomal protein L17 OS=Rattus norvegicus GN=... [more]
RL17_MOUSE1.460e-4859.1260S ribosomal protein L17 OS=Mus musculus GN=Rpl17... [more]

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Properties
Property NameValue
Genbank descriptionC34208B07EF PostHarveN Citrus clementina cDNA clone C34208B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932395 ID=FC932395; Name=FC932395; organism=Citrus clementina; type=EST; length=741bp
GGACGACGAAAAAGCGACAACAACTCATCACCGAGGACCATCACACCCCC
CTCGCCAACTCCTTCAAGATGGCCCGTTACGCCGCCCAGGAGATCTCGGA
GGCCAAGAGCGCCCGCGCGCGCGGCTCTTACCTCCGTGTCAGCTTCAAGA
ACACCCGTGAGACCGCCCAGGCCGTCAACGGCATGAAGCTGTCCAAGGCC
CTTGCTTTCCTCGAGAACGTTACCAACAAGACCATGGCCGTTCCCATGCG
CCGTTATGCTGGCTCCACCGGTCGCACTGCCCAGGGCAAGCAGTTCGGTG
TCTCCAAGGCCCGCTGGCCCGTCAAGTCTGCTGAGCACATCATCGATCTG
CTCAAGAACGCTGAGGCCAACGCCGATGGCAAGGGTCTCGACACCAGCGC
CTTGATCATCAAGCGCATCCAGGTCAACCAGGCTCCCAAGGGTCGCCGCC
GCACTTACCGTGCTCACGGTCGTACCAACCCCTACATGACCAACCCCTGC
CACATCGAGCTCATCCTCACCGAGGCTGCCGAGGAGGTCAAGAAGGCCAG
CACCGACAAGCAGGTCCGCCTCTCTTCCCGCCAGCGTGGTACTCAGATCC
GCCGTGCTCTCATTGAGGCATAAACGGATCGCCATAAGAAGGTGTGAGGG
GACGTGATGTGAAAAGATTTTTGCGGTGGACGGGAAGGATCGGAGTTCTG
TGCATCAGTTACGTATGTTGGAACGGAATCGATACCGGATC
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