FC932396

Overview
NameFC932396
Unique NameFC932396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932396 vs. ExPASy Swiss-Prot
Match: SUFE_ARATH (SufE-like protein, chloroplastic OS=Arabidopsis thaliana GN=EMB1374 PE=1 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 4.995e-65
Identity = 143/251 (56.97%), Postives = 169/251 (67.33%), Query Frame = 2
Query:    2 YLDDQKNVVYEADSDSVLTKGLAALLVQGLSNRPVEEIVKVTPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKAVELVFESEKAGGSVEGSNLG---------SKNSKNLTLERKGDGVGGLESKVESSSQVGSGKNLTLEMEXXXXXXXXXXXXXXXXXXXMRIRDKLEKELRPVVLEVEDISYQHAGHAGVRGS---DGETHFNVKIVSKEFEGKSLVKRHRLICDLXTEELQNGLHALSIVARTPSEV 718
            + D+++NVVYEADSDSVLTKGLAALLV+GLS RPV EI+++TPDF VLLGLQQSL+PSRNNG LNMLKLMQKKA+ L  + E+   S E S              N   + LE K D V  L ++    S+ GS                            MRIR+KLEKEL PV LEVED+SYQHAGHA VRGS   DGETHFN++IVS  F+GKSLVKRHRLI DL  +EL++GLHALSIVA+TP+EV
Sbjct:  140 FFDEERNVVYEADSDSVLTKGLAALLVKGLSGRPVPEILRITPDFAVLLGLQQSLSPSRNNGLLNMLKLMQKKALHLEVKGEEDSSSGESSESSFVSIPETKDEANVPEVDLESKPDLVEDLGTEKIDDSESGSN-------------------VVALGSRGMRIREKLEKELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLRIVSDAFQGKSLVKRHRLIYDLLQDELKSGLHALSIVAKTPAEV 371          
BLAST of FC932396 vs. ExPASy Swiss-Prot
Match: Y1419_SYNY3 (Uncharacterized sufE-like protein slr1419 OS=Synechocystis sp. (strain PCC 6803) GN=slr1419 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.552e-16
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 2
Query:    5 LDDQKNVVYEADSDSVLTKGLAALLVQGLSNRPVEEIVKVTPDFVVLLGLQQSLTPSRNNGFLNMLKLMQKKAV 226
            L+D K V+Y+ DSD+ L KGL ALL+QGL+     EIV++TPDF+   GLQ SLTPSR NGF N+ K+MQ KA+
Sbjct:   76 LEDGK-VMYQGDSDAQLVKGLVALLIQGLNGLTPTEIVELTPDFIEATGLQVSLTPSRANGFYNIFKMMQTKAI 148          
BLAST of FC932396 vs. ExPASy Swiss-Prot
Match: BOLA1_MOUSE (BolA-like protein 1 OS=Mus musculus GN=Bola1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.407e-12
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 2
Query:  467 IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLICDLXTEELQNGLHALSIVARTPSE 715
            IR KLE+ L P VLE+ + S  HA  AG      ETHF V +VS  FEG S ++RHRL+ +  +EEL   +HAL+I A+TP++
Sbjct:   36 IRAKLEQALSPEVLELRNESGGHAVPAG-----SETHFRVAVVSSRFEGMSPLQRHRLVHEALSEELAGPVHALAIQAKTPAQ 113          
BLAST of FC932396 vs. ExPASy Swiss-Prot
Match: BOLA1_BOVIN (BolA-like protein 1 OS=Bos taurus GN=BOLA1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 2
Query:  467 IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLICDLXTEELQNGLHALSIVARTPSE 715
            IR KLE+ L P VLE+ + S    GHA   GS  ETHF V +VS  FEG S ++RHRL+    +EEL   +HAL+I ARTP++
Sbjct:   36 IRTKLEQALNPEVLELRNES---GGHAVPPGS--ETHFRVAVVSSRFEGLSPLQRHRLVHAALSEELAGPVHALAIQARTPAQ 113          
BLAST of FC932396 vs. ExPASy Swiss-Prot
Match: BOLA1_PONAB (BolA-like protein 1 OS=Pongo abelii GN=BOLA1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 2
Query:  467 IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLICDLXTEELQNGLHALSIVARTPSE 715
            IR KLE+ L P VLE+ + S    GHA   GS  ETHF V +VS  FEG S ++RHRLI     EEL   +HAL+I ARTP++
Sbjct:   36 IRTKLEQALSPEVLELRNES---GGHAVPPGS--ETHFRVAVVSSRFEGLSPLQRHRLIHAALAEELAGPVHALAIQARTPAQ 113          
BLAST of FC932396 vs. ExPASy Swiss-Prot
Match: BOLA1_HUMAN (BolA-like protein 1 OS=Homo sapiens GN=BOLA1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.435e-11
Identity = 42/83 (50.60%), Postives = 53/83 (63.86%), Query Frame = 2
Query:  467 IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLICDLXTEELQNGLHALSIVARTPSE 715
            IR KLE+ L P VLE+ + S    GHA   GS  ETHF V +VS  FEG S ++RHRL+     EEL   +HAL+I ARTP++
Sbjct:   36 IRTKLEEALSPEVLELRNES---GGHAVPPGS--ETHFRVAVVSSRFEGLSPLQRHRLVHAALAEELGGPVHALAIQARTPAQ 113          
BLAST of FC932396 vs. ExPASy Swiss-Prot
Match: YA044_YEAST (Uncharacterized bolA-like protein YAL044W-A OS=Saccharomyces cerevisiae GN=YAL044W-A PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 2
Query:  524 SYQHAGHAGVRGS-DGETHFNVKIVSKEFEGKSLVKRHRLICDLXTEEL--QNGLHALSIVARTPSE 715
            S++H GHAGV+G+   ETHF +++VSK+FEG  L +RHR++  L  +E+   NG+HAL +  +TP E
Sbjct:   38 SHKHKGHAGVQGNVSAETHFRIEMVSKKFEGLKLPQRHRMVYSLLQDEMAQANGIHALQLSLKTPQE 104          
BLAST of FC932396 vs. ExPASy Swiss-Prot
Match: YCB1_PSEDE (Uncharacterized protein in cobS 5'region OS=Pseudomonas denitrificans PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 38/83 (45.78%), Postives = 45/83 (54.22%), Query Frame = 2
Query:  467 IRDKLEKELRPVVLEVEDISYQHAGHAGVRGSDGETHFNVKIVSKEFEGKSLVKRHRLICDLXTEELQNGLHALSIVARTPSE 715
            I  KL +   P  LEV + S+QH GH       GE+H  V+IVS  F G S V RHR I DL   EL  GLHAL++    P E
Sbjct:    7 IEKKLIEAFHPERLEVINESHQHTGHQPGFDGTGESHMRVRIVSSAFAGMSRVARHRAINDLLKPELDAGLHALAVEPAAPGE 89          
The following BLAST results are available for this feature:
BLAST of FC932396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SUFE_ARATH4.995e-6556.97SufE-like protein, chloroplastic OS=Arabidopsis th... [more]
Y1419_SYNY39.552e-1658.11Uncharacterized sufE-like protein slr1419 OS=Synec... [more]
BOLA1_MOUSE6.407e-1248.19BolA-like protein 1 OS=Mus musculus GN=Bola1 PE=1 ... [more]
BOLA1_BOVIN1.093e-1150.60BolA-like protein 1 OS=Bos taurus GN=BOLA1 PE=2 SV... [more]
BOLA1_PONAB1.427e-1151.81BolA-like protein 1 OS=Pongo abelii GN=BOLA1 PE=2 ... [more]
BOLA1_HUMAN2.435e-1150.60BolA-like protein 1 OS=Homo sapiens GN=BOLA1 PE=1 ... [more]
YA044_YEAST5.424e-1147.76Uncharacterized bolA-like protein YAL044W-A OS=Sac... [more]
YCB1_PSEDE9.252e-1145.78Uncharacterized protein in cobS 5'region OS=Pseudo... [more]
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Properties
Property NameValue
Genbank descriptionC34208B08EF PostHarveN Citrus clementina cDNA clone C34208B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932396 ID=FC932396; Name=FC932396; organism=Citrus clementina; type=EST; length=739bp
TTATCTTGATGACCAAAAGAACGTTGTGTACGAAGCTGATTCTGATTCCG
TTTTGACCAAAGGATTGGCGGCTCTGCTTGTTCAAGGCTTGTCTAATAGG
CCTGTAGAGGAGATTGTGAAAGTTACGCCTGATTTTGTTGTGCTTCTTGG
GTTGCAACAGAGTTTGACTCCTTCTAGGAATAATGGGTTCTTGAATATGT
TGAAGTTGATGCAAAAGAAAGCAGTTGAATTGGTTTTTGAGAGTGAGAAG
GCTGGTGGCTCTGTTGAGGGATCGAATTTGGGGTCGAAAAATAGTAAAAA
TTTGACTTTGGAGAGGAAAGGTGATGGTGTTGGAGGTTTGGAGTCAAAGG
TTGAATCAAGCTCTCAAGTCGGTAGTGGTAAAAATTTAACCTTGGAGATG
GAAGGTGATAGTGGGGCTGGTGACAATGGGTCGAATTCAGGTGGTTTGGG
GAGTAGAGGGATGAGAATTAGGGATAAATTAGAAAAGGAGCTCAGGCCTG
TTGTATTAGAAGTGGAAGATATTTCGTATCAGCACGCTGGGCATGCTGGT
GTTCGAGGAAGTGATGGGGAGACACATTTTAATGTGAAGATTGTATCAAA
GGAGTTCGAAGGGAAGAGTTTGGTGAAGAGGCATAGGTTGATTTGTGATT
TATTNACAGAGGAGCTGCAGAATGGATTGCACGCATTGTCAATTGTCGCT
AGGACACCTTCTGAAGTTNAAGTGGTATTACACTGATGG
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