FC932398

Overview
NameFC932398
Unique NameFC932398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932398 vs. ExPASy Swiss-Prot
Match: DHRS2_HUMAN (Dehydrogenase/reductase SDR family member 2 OS=Homo sapiens GN=DHRS2 PE=1 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 2.835e-35
Identity = 79/213 (37.09%), Postives = 118/213 (55.40%), Query Frame = 1
Query:   19 KVAIVTASTQGIGFGIAERLGLEGASVVVSSRKQKNVDEAVVKLKARGIEVIGVVCHVSNGQQRKNLINQTIEKFGKIXXXXXXXXXXXXXXXILQTKESVLDKLWDINVKSSILLLQDAAPHLQ-KGSSVVLISSIAGYQPQSSMAMYGVXXXXXXXXXXXXXXXXXP-DTRVNCVAPGFVPTHFAEYITSNDGVRQTIEQNTLLNRLGTTE 651
            +VA+VT ST GIGF IA RL  +GA VV+SSRKQ+NVD A+ KL+  G+ V G+VCHV   + R+ L+ + +E  G +                L T E + DK+  +NVKS  LLL    P+++ +  +V+L+SSIA Y P  ++ +Y V                 P D RVNCV PG + T F++    N+ + +  +++  L R+G +E
Sbjct:   15 RVAVVTGSTSGIGFAIARRLARDGAHVVISSRKQQNVDRAMAKLQGEGLSVAGIVCHVGKAEDREQLVAKALEHCGGVDFLVCSAGVNPLVGSTLGTSEQIWDKILSVNVKSPALLLSQLLPYMENRRGAVILVSSIAAYNPVVALGVYNVSKTALLGLTRTLALELAPKDIRVNCVVPGIIKTDFSKVFHGNESLWKNFKEHHQLQRIGESE 227          
BLAST of FC932398 vs. ExPASy Swiss-Prot
Match: DHRS4_HUMAN (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.556e-33
Identity = 81/214 (37.85%), Postives = 114/214 (53.27%), Query Frame = 1
Query:   19 KVAIVTASTQGIGFGIAERLGLEGASVVVSSRKQKNVDEAVVKLKARGIEVIGVVCHVSNGQQRKNLINQTIEKFGKIXXXXXXXXXXXXXXXILQTKESVLDKLWDINVKSSILLLQDAAPHLQK--GSSVVLISSIAGYQPQSSMAMYGVXXXXXXXXXXXXXXXXXP-DTRVNCVAPGFVPTHFAEYITSNDGVRQTIEQNTLLNRLGTTE 651
            KVA+VTAST GIGF IA RL  +GA VVVSSRKQ+NVD+AV  L+  G+ V G VCHV   + R+ L+   ++  G I               I+   E V DK  DINVK+  L+ +   P ++K  G SVV++SSIA + P    + Y V                 P + RVNC+APG + T F+  +  +    +++++   + RLG  E
Sbjct:   15 KVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSIMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLRIRRLGEPE 228          
BLAST of FC932398 vs. ExPASy Swiss-Prot
Match: DHRS4_BOVIN (Dehydrogenase/reductase SDR family member 4 OS=Bos taurus GN=DHRS4 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.032e-33
Identity = 80/214 (37.38%), Postives = 114/214 (53.27%), Query Frame = 1
Query:   19 KVAIVTASTQGIGFGIAERLGLEGASVVVSSRKQKNVDEAVVKLKARGIEVIGVVCHVSNGQQRKNLINQTIEKFGKIXXXXXXXXXXXXXXXILQTKESVLDKLWDINVKSSILLLQDAAPHLQK--GSSVVLISSIAGYQPQSSMAMYGV-XXXXXXXXXXXXXXXXXPDTRVNCVAPGFVPTHFAEYITSNDGVRQTIEQNTLLNRLGTTE 651
            KVA+VTAST GIGF IA RL  +GA VVVSSRKQ+NVD AV  LK  G+ V G VCHV   + R+ L+   ++  G +               ++   E V DK+ D+NVK++ LL +   P + K  G S+V++SSIA Y P  S+  Y V                   + RVNC+APG + T F+  +  +   +++I+    + R+G  E
Sbjct:   15 KVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDRAVATLKGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGVDILISNAAVSPFFGSLMDVPEEVWDKILDVNVKATALLTKAVVPEMAKRGGGSIVIVSSIAAYSPFPSLGPYNVSKTALLGLTKNLALELAESNVRVNCLAPGLIRTSFSRVLWEDPARQESIKATFQIKRIGKPE 228          
BLAST of FC932398 vs. ExPASy Swiss-Prot
Match: DHRS4_PONAB (Dehydrogenase/reductase SDR family member 4 OS=Pongo abelii GN=DHRS4 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.653e-33
Identity = 80/214 (37.38%), Postives = 114/214 (53.27%), Query Frame = 1
Query:   19 KVAIVTASTQGIGFGIAERLGLEGASVVVSSRKQKNVDEAVVKLKARGIEVIGVVCHVSNGQQRKNLINQTIEKFGKIXXXXXXXXXXXXXXXILQTKESVLDKLWDINVKSSILLLQDAAPHLQK--GSSVVLISSIAGYQPQSSMAMYGVXXXXXXXXXXXXXXXXXP-DTRVNCVAPGFVPTHFAEYITSNDGVRQTIEQNTLLNRLGTTE 651
            KVA+VTAST GIGF IA RL  +GA VVVSSRKQ+NVD+AV  L+  G+ V G VCHV   + R+ L+   ++  G I               ++   E V DK  DINVK+  L+ +   P ++K  G SVV++SSIA + P    + Y V                 P + RVNC+APG + T F+  +  +    +++++   + RLG  E
Sbjct:   15 KVALVTASTDGIGFAIARRLAQDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLRIRRLGEPE 228          
BLAST of FC932398 vs. ExPASy Swiss-Prot
Match: DHRS4_PIG (Dehydrogenase/reductase SDR family member 4 OS=Sus scrofa GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.720e-33
Identity = 75/219 (34.25%), Postives = 117/219 (53.42%), Query Frame = 1
Query:    4 KRFQGKVAIVTASTQGIGFGIAERLGLEGASVVVSSRKQKNVDEAVVKLKARGIEVIGVVCHVSNGQQRKNLINQTIEKFGKIXXXXXXXXXXXXXXXILQTKESVLDKLWDINVKSSILLLQDAAPHLQK--GSSVVLISSIAGYQPQSSMAMYGVXXXXXXXXXXXXXXXXXP-DTRVNCVAPGFVPTHFAEYITSNDGVRQTIEQNTLLNRLGTTE 651
            K  + KVA+VTAST GIG  IA RL  +GA VVVSSRKQ+NVD  V  L+  G+ V G VCHV   + R+ L+   +   G +               I+   E V DK+  +NVK+++L+ +   P ++K  G SV+++SS+  Y P  ++  Y V                 P + RVNC+APG + T+F++ +  +   ++ ++++  + RLG  E
Sbjct:   10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGNPE 228          
BLAST of FC932398 vs. ExPASy Swiss-Prot
Match: DHRS4_RABIT (Dehydrogenase/reductase SDR family member 4 OS=Oryctolagus cuniculus GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.317e-32
Identity = 81/214 (37.85%), Postives = 112/214 (52.34%), Query Frame = 1
Query:   19 KVAIVTASTQGIGFGIAERLGLEGASVVVSSRKQKNVDEAVVKLKARGIEVIGVVCHVSNGQQRKNLINQTIEKFGKIXXXXXXXXXXXXXXXILQTKESVLDKLWDINVKSSILLLQDAAPHLQK--GSSVVLISSIAGYQPQSSMAMYGV-XXXXXXXXXXXXXXXXXPDTRVNCVAPGFVPTHFAEYITSNDGVRQTIEQNTLLNRLGTTE 651
            KVAIVTAST GIG  IA RL  +GA VV+SSRKQ+NVD AV  L+A G+ V G VCHV   + R+ L+   +   G I               ++   E V DK+ DINVK+  L+ +   P ++K  G SVV+++SIA + P S +  Y V                   + RVNC+APG + T F++ +  +    + I Q   + RLG  E
Sbjct:   15 KVAIVTASTDGIGLAIARRLAQDGAHVVISSRKQQNVDRAVAALQAEGLSVTGTVCHVGKAEDRERLVATALNLHGGIDILVSNAAVNPFFGKLMDVTEEVWDKILDINVKAMALMTKAVVPEMEKRGGGSVVIVASIAAFNPFSGLGPYNVSKTALVGLTKNLALELAAQNIRVNCLAPGLIKTSFSKALWEDKAQEENIIQKLRIRRLGKPE 228          
BLAST of FC932398 vs. ExPASy Swiss-Prot
Match: DHRS4_RAT (Dehydrogenase/reductase SDR family member 4 OS=Rattus norvegicus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.004e-32
Identity = 78/214 (36.45%), Postives = 114/214 (53.27%), Query Frame = 1
Query:   19 KVAIVTASTQGIGFGIAERLGLEGASVVVSSRKQKNVDEAVVKLKARGIEVIGVVCHVSNGQQRKNLINQTIEKFGKIXXXXXXXXXXXXXXXILQTKESVLDKLWDINVKSSILLLQDAAPHLQK--GSSVVLISSIAGYQPQSSMAMYGVXXXXXXXXXXXXXXXXXP-DTRVNCVAPGFVPTHFAEYITSNDGVRQTIEQNTLLNRLGTTE 651
            KVA+VTAST GIG  IA RL  +GA VV+SSRKQ+NVD AV  L+  G+ V GVVCHV   + R+ L+N  ++    I               ++   E V +K+  INV +S ++++   P ++K  G SVV++SS+AG+    S+  Y V                 P + RVNC+APG + THF+  +       + I++   + RLG  E
Sbjct:   15 KVALVTASTDGIGLAIARRLAEDGAHVVISSRKQQNVDRAVATLQGEGLSVTGVVCHVGKAEDREKLVNMALKLHQGIDILVSNAAVNPFFGNLMDVTEEVWNKVLSINVTASAMMIKAVVPAMEKRGGGSVVIVSSVAGFVLFPSLGPYNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKTHFSSVLWKEKAREEMIKETMQIRRLGKPE 228          
BLAST of FC932398 vs. ExPASy Swiss-Prot
Match: DHRS4_MOUSE (Dehydrogenase/reductase SDR family member 4 OS=Mus musculus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.243e-31
Identity = 77/214 (35.98%), Postives = 112/214 (52.34%), Query Frame = 1
Query:   19 KVAIVTASTQGIGFGIAERLGLEGASVVVSSRKQKNVDEAVVKLKARGIEVIGVVCHVSNGQQRKNLINQTIEKFGKIXXXXXXXXXXXXXXXILQTKESVLDKLWDINVKSSILLLQDAAPHLQK--GSSVVLISSIAGYQPQSSMAMYGVXXXXXXXXXXXXXXXXXP-DTRVNCVAPGFVPTHFAEYITSNDGVRQTIEQNTLLNRLGTTE 651
            KVA+VTAST GIGF IA RL  +GA VVVSSRKQ+NVD AV  L+  G+ V G+VCHV   + R+ LI   +++   I               ++   E V DK+  INV ++ ++++   P ++K  G SVV++ S+AG+    S+  Y V                 P + RVNC+APG + T F+  +         I++   + RLG  E
Sbjct:   15 KVALVTASTDGIGFAIARRLAEDGAHVVVSSRKQQNVDRAVATLQGEGLSVTGIVCHVGKAEDREKLITTALKRHRGIDILVSNAAVNPFFGNLMDVTEEVWDKVLSINVTATAMMIKAVVPEMEKRGGGSVVIVGSVAGFTRFPSLGPYNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKTRFSSVLWEEKAREDFIKEAMQIRRLGKPE 228          
BLAST of FC932398 vs. ExPASy Swiss-Prot
Match: DR4L2_HUMAN (Dehydrogenase/reductase SDR family member 4-like 2 OS=Homo sapiens GN=DHRS4L2 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.330e-27
Identity = 70/178 (39.33%), Postives = 94/178 (52.81%), Query Frame = 1
Query:   19 KVAIVTASTQGIGFGIAERLGLEGASVVVSSRKQKNVDEAVVKLKARGIEVIGVVCHVSNGQQRKNLINQTIEKFGKIXXXXXXXXXXXXXXXILQTKESVLDKLWDINVKSSILLLQDAAPHLQK--GSSVVLISSIAGYQPQSSMAMYGVXXXXXXXXXXXXXXXXXP-DTRVNCV 543
            KVA+VTAST GIGF IA RL  + A VVVSSRKQ+NVD+AV  L+  G+ V G VCHV   + R+ L+   ++  G I               ++   E V DK  DINVK+  L+ +   P ++K  G SVV++SSIA + P    + Y V                 P + RVNC+
Sbjct:   31 KVALVTASTDGIGFAIARRLAQDRAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVKLHGGIDILVSNAAVNPFFGSLMDVTEEVWDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLNNTLAIELAPRNIRVNCL 208          
BLAST of FC932398 vs. ExPASy Swiss-Prot
Match: Y182_METEA (Uncharacterized oxidoreductase MexAM1_META1p0182 OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=MexAM1_META1p0182 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 57/188 (30.32%), Postives = 93/188 (49.47%), Query Frame = 1
Query:    7 RFQGKVAIVTASTQGIGFGIAERLGLEGASVVVSSRKQKNVDEAVVK-LKARGIEVIGVVCHVSNGQQRKNLINQTIEKFGKIXXXXXXXXXXXXXXXILQTKESVLDKLWDINVKSSILLLQDAAPHLQKGSSVVLISSIAGYQPQSSMAMY-GVXXXXXXXXXXXXXXXXXPDTRVNCVAPGFVPT 564
            + +GKVA+VT +++GIG  IA+ L  +GA+VVV+    K   +AVV+ + A G + I V   VS   Q + L+   +++FG++               I +  E    +++D+NV   +L  Q A+ HL +G S++ ISS+       + A+Y G                     RVN V+PG+V T
Sbjct:    3 KLEGKVAVVTGASKGIGAAIAKALAKDGAAVVVNYASSKAGADAVVEAITAAGGKAIAVQADVSQAVQARGLVEAAVQQFGRL-DVLVNNSGVYEFAAIEEVTEEHYRRIFDVNVLGVLLATQAASKHLGEGGSIINISSVVTDVLMPTSAVYSGTKGALNAISGVLANELAPRKIRVNVVSPGYVVT 189          
The following BLAST results are available for this feature:
BLAST of FC932398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
DHRS2_HUMAN2.835e-3537.09Dehydrogenase/reductase SDR family member 2 OS=Hom... [more]
DHRS4_HUMAN1.556e-3337.85Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]
DHRS4_BOVIN2.032e-3337.38Dehydrogenase/reductase SDR family member 4 OS=Bos... [more]
DHRS4_PONAB2.653e-3337.38Dehydrogenase/reductase SDR family member 4 OS=Pon... [more]
DHRS4_PIG7.720e-3334.25Dehydrogenase/reductase SDR family member 4 OS=Sus... [more]
DHRS4_RABIT1.317e-3237.85Dehydrogenase/reductase SDR family member 4 OS=Ory... [more]
DHRS4_RAT5.004e-3236.45Dehydrogenase/reductase SDR family member 4 OS=Rat... [more]
DHRS4_MOUSE3.243e-3135.98Dehydrogenase/reductase SDR family member 4 OS=Mus... [more]
DR4L2_HUMAN6.330e-2739.33Dehydrogenase/reductase SDR family member 4-like 2... [more]
Y182_METEA5.558e-1530.32Uncharacterized oxidoreductase MexAM1_META1p0182 O... [more]

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Properties
Property NameValue
Genbank descriptionC34208B10EF PostHarveN Citrus clementina cDNA clone C34208B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932398 ID=FC932398; Name=FC932398; organism=Citrus clementina; type=EST; length=693bp
GCAAAAAGATTCCAAGGGAAGGTGGCGATCGTAACGGCTTCGACTCAGGG
CATTGGCTTCGGCATCGCTGAACGGCTCGGCTTGGAAGGCGCCTCCGTGG
TTGTCTCTTCACGAAAGCAGAAAAATGTGGATGAAGCAGTTGTCAAACTC
AAAGCTCGAGGAATCGAAGTTATTGGAGTTGTTTGTCATGTGTCAAATGG
ACAACAGAGAAAGAATCTCATAAACCAAACTATTGAGAAATTTGGAAAAA
TAGATGTGGTTGTTTCAAATGCTGCTGCCAATCCCTCTGTTGATTCCATC
CTGCAAACCAAAGAATCAGTTCTCGACAAGTTATGGGATATCAATGTTAA
ATCCAGTATACTTCTTCTACAGGATGCTGCTCCTCACTTGCAGAAGGGTT
CTTCAGTTGTTTTGATCTCCTCTATAGCTGGCTATCAGCCACAGTCATCT
ATGGCCATGTATGGAGTCACTAAGACGGCTTTGTTAGGTTTGACCAAGGC
TCTTGCAGCTGANATGACTCCAGATACTCGTGTCAATTGTGTTGCTCCTG
GTTTTGTACCAACACACTTTGCTGAGTACATCACAAGTAATGATGGCGTT
AGACAGACAATTGAGCAGAACACCTTGCTCAATAGACTTGGTACCACAGA
GATATGGCTGCCGCTGCTGCTTTTCTGGCATCTGATGATGCTT
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