FC932402

Overview
NameFC932402
Unique NameFC932402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_SPHWW (30S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpsP PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.751e-19
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682
            M V IRLAR G K +P+YR++ AD+RSPRDG  +E +G YNPL  +D  KR+ L+ DR K+WLSVGAQP+D V R L
Sbjct:    1 MAVSIRLARGGAKKRPYYRIVVADARSPRDGAFIEKIGAYNPLLAKDDPKRVVLDTDRAKHWLSVGAQPTDRVARFL 77          
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_ROSDO (30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpsP PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.693e-19
Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 2
Query:  452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682
            M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +DS +R+ ++ +RV+YWL  GAQP+D V R+L
Sbjct:    1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDAERVQYWLGQGAQPTDRVARML 77          
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_SILPO (30S ribosomal protein S16 OS=Silicibacter pomeroyi GN=rpsP PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 2
Query:  452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682
            M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +DS +R+ ++ +RV+YWLS GAQ +D V R+L
Sbjct:    1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQYWLSQGAQTTDRVARML 77          
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_DINSH (30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DFL 12) GN=rpsP PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 43/77 (55.84%), Postives = 59/77 (76.62%), Query Frame = 2
Query:  452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682
            M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL  +DS  R+ ++ +RV+YWL  GA+P+D V R+L
Sbjct:    1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERVQYWLGEGAKPTDRVARML 77          
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_RHOS5 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpsP PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682
            M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL  +DS  R+ +N +RV+YWLS GAQP+D V R L
Sbjct:    1 MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNVERVQYWLSQGAQPTDRVARFL 77          
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_RHOS4 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpsP PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682
            M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL  +DS  R+ +N +RV+YWL+ GAQP+D V R L
Sbjct:    1 MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQYWLAQGAQPTDRVARFL 77          
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_RHOS1 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpsP PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682
            M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL  +DS  R+ +N +RV+YWL+ GAQP+D V R L
Sbjct:    1 MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQYWLAQGAQPTDRVARFL 77          
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_RHOPT (30S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpsP PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 2
Query:  452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682
            M V IRLAR G K +PFY V+ ADSR PRDG+ +E LGY+NPL  +D+  R+ L+ D+VK WL+ GAQPSD V R L
Sbjct:    1 MSVVIRLARAGTKKRPFYHVVVADSRFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVKDWLAKGAQPSDRVARFL 77          
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_RHOPS (30S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain BisB5) GN=rpsP PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 2
Query:  452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682
            M V IRLAR G K +PFY V+ ADSR PRDG+ +E LGY+NPL  +D+  R+ L+ D+VK WL+ GAQPSD V R L
Sbjct:    1 MSVVIRLARAGTKKRPFYHVVVADSRFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVKDWLAKGAQPSDRVARFL 77          
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_RHOPA (30S ribosomal protein S16 OS=Rhodopseudomonas palustris GN=rpsP PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18
Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 2
Query:  452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682
            M V IRLAR G K +PFY V+ ADSR PRDG+ +E LGY+NPL  +D+  R+ L+ D+VK WL+ GAQPSD V R L
Sbjct:    1 MSVVIRLARAGTKKRPFYHVVVADSRFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVKDWLAKGAQPSDRVARFL 77          
The following BLAST results are available for this feature:
BLAST of FC932402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS16_SPHWW2.751e-1958.4430S ribosomal protein S16 OS=Sphingomonas wittichi... [more]
RS16_ROSDO4.693e-1957.1430S ribosomal protein S16 OS=Roseobacter denitrifi... [more]
RS16_SILPO1.046e-1857.1430S ribosomal protein S16 OS=Silicibacter pomeroyi... [more]
RS16_DINSH1.366e-1855.8430S ribosomal protein S16 OS=Dinoroseobacter shiba... [more]
RS16_RHOS51.783e-1857.1430S ribosomal protein S16 OS=Rhodobacter sphaeroid... [more]
RS16_RHOS43.042e-1855.8430S ribosomal protein S16 OS=Rhodobacter sphaeroid... [more]
RS16_RHOS13.042e-1855.8430S ribosomal protein S16 OS=Rhodobacter sphaeroid... [more]
RS16_RHOPT3.042e-1858.4430S ribosomal protein S16 OS=Rhodopseudomonas palu... [more]
RS16_RHOPS3.042e-1858.4430S ribosomal protein S16 OS=Rhodopseudomonas palu... [more]
RS16_RHOPA3.042e-1858.4430S ribosomal protein S16 OS=Rhodopseudomonas palu... [more]

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Properties
Property NameValue
Genbank descriptionC34208C02EF PostHarveN Citrus clementina cDNA clone C34208C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932402 ID=FC932402; Name=FC932402; organism=Citrus clementina; type=EST; length=682bp
GAAGCCCGATCGAAACGAAAGCCTAACAAAATCAAAACAAACCCTGAAGC
AGAAAGCCTGGAACTATCTTGCGGTTTCTCCTCTCTGCCCACTGAAGACA
GAAGGTGCCGGTGCCGGCTGCCGCTAAAAATACCCACGCCACGACACAGC
TGCGCCACGTTCTAGCCGCTGATAGCCTCACGCGTCACCACGACAGGCAC
GAGCCGCCGACAGCCTCTGAGCCTCAGCCCAAAACAGTCGCAGTTCTGCC
GACGGCCTCACCACACGTCAGCCTCATCTCTCCTCTCTCAAATCAGCGTC
AGTCCACAACAACCGTACCACAGCAGCCTCAATCGACTACAGAAACCCAC
GACCGCAGCTCACGGCAGCAGGCCAGCAGCCCACGAGTCCACGACAACAA
CCTCAGCGAACCAGCCTCAGCAAAAAAAGAGGGTATCCAGGAAAAGAAAA
GATGGTGGTGAGGATTCGATTGGCGAGATTCGGATGTAAGAACAAACCTT
TCTATCGGGTGATGGCTGCTGATAGCCGATCACCCAGAGATGGTAAGCAT
CTTGAAGTCTTGGGCTATTACAATCCCTTGCCAGGTCAAGACAGCGGCAA
AAGAATGGGTCTGAATTTTGATAGAGTGAAGTATTGGCTATCAGTTGGTG
CTCAACCATCGGACCCTGTCCAGCGCATTCTT
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