FC932402
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_SPHWW (30S ribosomal protein S16 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rpsP PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.751e-19 Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 2 Query: 452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682 M V IRLAR G K +P+YR++ AD+RSPRDG +E +G YNPL +D KR+ L+ DR K+WLSVGAQP+D V R L Sbjct: 1 MAVSIRLARGGAKKRPYYRIVVADARSPRDGAFIEKIGAYNPLLAKDDPKRVVLDTDRAKHWLSVGAQPTDRVARFL 77
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_ROSDO (30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpsP PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 4.693e-19 Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 2 Query: 452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682 M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL +DS +R+ ++ +RV+YWL GAQP+D V R+L Sbjct: 1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDAERVQYWLGQGAQPTDRVARML 77
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_SILPO (30S ribosomal protein S16 OS=Silicibacter pomeroyi GN=rpsP PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18 Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 2 Query: 452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682 M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL +DS +R+ ++ +RV+YWLS GAQ +D V R+L Sbjct: 1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQYWLSQGAQTTDRVARML 77
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_DINSH (30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DFL 12) GN=rpsP PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18 Identity = 43/77 (55.84%), Postives = 59/77 (76.62%), Query Frame = 2 Query: 452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682 M ++IRLAR G K +PFYR++AADSR PRDG+ +E LG YNPL +DS R+ ++ +RV+YWL GA+P+D V R+L Sbjct: 1 MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERVQYWLGEGAKPTDRVARML 77
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_RHOS5 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=rpsP PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18 Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 2 Query: 452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682 M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL +DS R+ +N +RV+YWLS GAQP+D V R L Sbjct: 1 MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNVERVQYWLSQGAQPTDRVARFL 77
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_RHOS4 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpsP PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18 Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 2 Query: 452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682 M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL +DS R+ +N +RV+YWL+ GAQP+D V R L Sbjct: 1 MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQYWLAQGAQPTDRVARFL 77
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_RHOS1 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpsP PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18 Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 2 Query: 452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682 M ++IRLAR G K +P Y ++A+DSR PRDG+ LE LG YNPL +DS R+ +N +RV+YWL+ GAQP+D V R L Sbjct: 1 MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQYWLAQGAQPTDRVARFL 77
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_RHOPT (30S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpsP PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18 Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 2 Query: 452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682 M V IRLAR G K +PFY V+ ADSR PRDG+ +E LGY+NPL +D+ R+ L+ D+VK WL+ GAQPSD V R L Sbjct: 1 MSVVIRLARAGTKKRPFYHVVVADSRFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVKDWLAKGAQPSDRVARFL 77
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_RHOPS (30S ribosomal protein S16 OS=Rhodopseudomonas palustris (strain BisB5) GN=rpsP PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18 Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 2 Query: 452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682 M V IRLAR G K +PFY V+ ADSR PRDG+ +E LGY+NPL +D+ R+ L+ D+VK WL+ GAQPSD V R L Sbjct: 1 MSVVIRLARAGTKKRPFYHVVVADSRFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVKDWLAKGAQPSDRVARFL 77
BLAST of FC932402 vs. ExPASy Swiss-Prot
Match: RS16_RHOPA (30S ribosomal protein S16 OS=Rhodopseudomonas palustris GN=rpsP PE=1 SV=3) HSP 1 Score: 92.0485 bits (227), Expect = 3.042e-18 Identity = 45/77 (58.44%), Postives = 56/77 (72.73%), Query Frame = 2 Query: 452 MVVRIRLARFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDSGKRMGLNFDRVKYWLSVGAQPSDPVQRIL 682 M V IRLAR G K +PFY V+ ADSR PRDG+ +E LGY+NPL +D+ R+ L+ D+VK WL+ GAQPSD V R L Sbjct: 1 MSVVIRLARAGTKKRPFYHVVVADSRFPRDGRFIERLGYFNPLMAKDNEARLKLDLDKVKDWLAKGAQPSDRVARFL 77 The following BLAST results are available for this feature:
BLAST of FC932402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932402 ID=FC932402; Name=FC932402; organism=Citrus clementina; type=EST; length=682bpback to top |