FC932403

Overview
NameFC932403
Unique NameFC932403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932403 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 5.673e-31
Identity = 87/208 (41.83%), Postives = 105/208 (50.48%), Query Frame = 1
Query:   94 MCGGALIADYDEVRPVRRERKLTSEDLWSEF--GSISDLLGLDYNGKSHPKQPLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNXXXXXXXXXXXXXKRIRGDKAKLNF--------------XXXXXXXXXXXXKKRCMPS---PELTQPRFETVGTPPAPAPSPWVGFGYQNEF 660
            MCGGA+I+DY  +    + RKLT+E+LWSE    +  D  G     K HP   + VK E  +    + A   GK +K    RKN+YRGIR+RPWGKWAAEIRDP KGVRVWLGTFN             K+IRGDKAKLNF                          KK C+ S    EL+QP F          P   +GFG  +EF
Sbjct:    1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAADDFWGFYSTSKLHPTNQVNVKEEAVK---KEQATEPGKRRK----RKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSESELSQPSF----------PVECIGFGNGDEF 191          
BLAST of FC932403 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 61/139 (43.88%), Postives = 73/139 (52.52%), Query Frame = 1
Query:   94 MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDYNGKSHPKQPLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNXXXXXXXXXXXXXKRIRGDKAKLNF 510
            MCGGA+I+D+                +WS+  S    LG   + K   ++P+ V  E+           +GK     R RKNLYRGIRQRPWGKWAAEIRDP KGVRVWLGTF               +IRG KAKLNF
Sbjct:    1 MCGGAIISDF----------------IWSKSESEPSQLGSVSSRKK--RKPVSVSEER-----------DGK-----RERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNF 105          
BLAST of FC932403 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.981e-19
Identity = 65/183 (35.52%), Postives = 79/183 (43.17%), Query Frame = 1
Query:   94 MCGGALIADYDEVRPVRRERKLTSEDLW-----------------SEFGSISDLLGLDYNGKSHPKQ------------------------PLKVKNEKAEDS--SNKAARVEGK-EKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNXXXXXXXXXXXXXKRIRGDKAKLNF 510
            MCGGA+I+D+    P  R R++TSE +W                 S F         D+ G                              P    +  AE S    K   ++G  EK   R RKN YRGIRQRPWGKWAAEIRDP +G R+WLGTF              +RIRG KAK+NF
Sbjct:    1 MCGGAIISDFI---PPPRSRRVTSEFIWPDLKKNLKGSKKSSKNRSNFFDFDAEFEADFQGFKDDSSIDCDDDFDVGDVFADVKPFVFTSTPKPAVSAAAEGSVFGKKVTGLDGDAEKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNF 180          
BLAST of FC932403 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.217e-18
Identity = 43/66 (65.15%), Postives = 47/66 (71.21%), Query Frame = 1
Query:  313 KKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNXXXXXXXXXXXXXKRIRGDKAKLNF 510
            K  +R RKN +RGIRQRPWGKWAAEIRDP KGVRVWLGTFN             +RIRG KAK+NF
Sbjct:  110 KSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNF 175          
BLAST of FC932403 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.602e-17
Identity = 43/70 (61.43%), Postives = 48/70 (68.57%), Query Frame = 1
Query:  301 EGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNXXXXXXXXXXXXXKRIRGDKAKLNF 510
            E  EK ++R RKN YRGIRQRPWGKWAAEIRDP KG R WLGTF+             +RIRG KAK+NF
Sbjct:  114 EQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNF 183          
BLAST of FC932403 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.357e-16
Identity = 42/70 (60.00%), Postives = 49/70 (70.00%), Query Frame = 1
Query:  301 EGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNXXXXXXXXXXXXXKRIRGDKAKLNF 510
            +GK+K++ R     Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFN             KRIRG KAKLNF
Sbjct:   16 DGKKKQSSR-----YKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNF 80          
BLAST of FC932403 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query:  271 EDSSNKAARVEGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNXXXXXXXXXXXXXKRIRGDKAKLNF 510
            E+S +KA   E +EKK +      YRG+RQRPWGKWAAEIRDP++  RVWLGTF+              R RG+KAKLNF
Sbjct:   59 EESMSKAFPEEAREKKRR------YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNF 132          
BLAST of FC932403 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.341e-15
Identity = 47/106 (44.34%), Postives = 54/106 (50.94%), Query Frame = 1
Query:  307 KEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNXXXXXXXXXXXXXKRIRGDKAKLNFXXXXXXXXXXXXKKRCMPSPELTQPRFETVGTPPAPAP 624
            +EK   R R   YRG+RQRPWGKWAAEIRDP K  RVWLGTF+                RG KAKLNF              +  PSP  +  R   + TPP+P P
Sbjct:   60 QEKSNSRQRN--YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNF-----PEHIRVNPTQLYPSPATSHDRI--IVTPPSPPP 156          
BLAST of FC932403 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 35/56 (62.50%), Postives = 39/56 (69.64%), Query Frame = 1
Query:  343 YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNXXXXXXXXXXXXXKRIRGDKAKLNF 510
            YRG+RQRPWGKWAAEIRDP+K  RVWLGTF+              R RG+KAKLNF
Sbjct:  185 YRGVRQRPWGKWAAEIRDPFKAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNF 240          
BLAST of FC932403 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 36/60 (60.00%), Postives = 38/60 (63.33%), Query Frame = 1
Query:  331 RKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNXXXXXXXXXXXXXKRIRGDKAKLNF 510
            R   YRG+RQRPWGKWAAEIRDP+K  RVWLGTF               R RG KAKLNF
Sbjct:   57 RPKKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNF 116          
The following BLAST results are available for this feature:
BLAST of FC932403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RAP23_ARATH5.673e-3141.83Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH1.004e-1943.88Ethylene-responsive transcription factor ERF071 OS... [more]
RA212_ARATH4.981e-1935.52Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF1_ORYSJ4.217e-1865.15Ethylene-responsive transcription factor 1 OS=Oryz... [more]
RAP22_ARATH1.602e-1761.43Ethylene-responsive transcription factor RAP2-2 OS... [more]
ERF73_ARATH1.357e-1660.00Ethylene-responsive transcription factor ERF073 OS... [more]
EF110_ARATH5.155e-1652.50Ethylene-responsive transcription factor ERF110 OS... [more]
EF112_ARATH3.341e-1544.34Ethylene-responsive transcription factor ERF112 OS... [more]
ABR1_ARATH2.829e-1462.50Ethylene-responsive transcription factor ABR1 OS=A... [more]
RAP26_ARATH3.694e-1460.00Ethylene-responsive transcription factor RAP2-6 OS... [more]

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Properties
Property NameValue
Genbank descriptionC34208C03EF PostHarveN Citrus clementina cDNA clone C34208C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932403 ID=FC932403; Name=FC932403; organism=Citrus clementina; type=EST; length=702bp
GGCCGGGGACACATTACTACTACAGCAACCTTTGTTTCTTCCTCAAAAAC
TTTCTCATCCCAACACACAAATTAGAAGAGAAGAAAAAATAATATGTGTG
GCGGTGCACTTATTGCTGATTATGATGAAGTCCGGCCGGTCAGGCGCGAG
CGCAAATTGACCTCCGAGGATCTCTGGTCCGAGTTTGGTTCCATTTCCGA
CCTCTTGGGCTTGGACTACAATGGCAAATCCCACCCTAAGCAACCTCTCA
AAGTGAAAAATGAGAAGGCTGAAGATTCAAGCAATAAAGCTGCTCGTGTT
GAGGGGAAGGAGAAGAAGACTCAGCGAGTTCGCAAGAACCTGTACAGAGG
AATACGGCAGAGGCCGTGGGGAAAATGGGCAGCTGAAATTAGAGACCCTT
ACAAGGGCGTCCGCGTTTGGCTCGGCACTTTCAACGCAGCCGAAGAAGCC
GCAAGAGCTTATGATGAAGCCGCCAAGCGTATCCGCGGCGACAAGGCCAA
GCTCAACTTCGCTCAGCCGCCGCCGCCAATAGCTCCACCCCCAGCTAAGA
AACGCTGCATGCCATCCCCTGAGTTGACTCAGCCGAGATTTGAAACCGTC
GGAACCCCACCGGCTCCGGCGCCGTCCCCGTGGGTGGGGTTTGGGTATCA
GAATGAGTTTTATCACCCAGGGCAGTAGACGACGAGTTTGAGCTGAGCCA
GC
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