FC932404

Overview
NameFC932404
Unique NameFC932404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932404 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.409e-71
Identity = 133/222 (59.91%), Postives = 167/222 (75.23%), Query Frame = 1
Query:   67 EQKMAQIGSSLLVPCVQELVKNPALV-VPDRYIRPDQDSPLISDDILIS-QIPVIDMQSLLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMIEFFEKWTA--GMRMNYYPPCPQ 720
            E K A   SS+LVP VQE+VK   +  VP RY+R DQD   + DD  +  +IP+IDM+ L S  +MDSE+ KLDFACKEWGFFQLVNHG+ ++FL+K+K E++ FFNL MEEKKK+WQRP ++EGFGQAFVVSE+QKLDWADLF     PV LRKPHLFPKLP   R+TLE+YS E++++A+ LI+KM   L IK EE+ + F+   +   MRMNYYPPCPQ
Sbjct:    2 EAKGAAQWSSILVPSVQEMVKEKTITTVPPRYVRSDQDKTEVDDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADLFFHTVQPVELRKPHLFPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQ 223          
BLAST of FC932404 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 6.723e-40
Identity = 88/196 (44.90%), Postives = 119/196 (60.71%), Query Frame = 1
Query:   70 QKMAQIGSSLLVPCVQELVKNPALVVPDRYIRPD--QDSPLISDDILISQIPVIDMQSLLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDE 651
            + +  +G SL V  VQ L       +P+RY+RP+   D  +  D+ L  +IPVID+  LL ++    ELAK   AC +WGFFQL+NHG+    +EK+K + E FF L  +EK  Y Q P  MEG+GQAFV SEEQKLDWAD+  ++T PV  R    +P  P S RET+E YSMEL+ +A  L   M + L ++ E
Sbjct:    3 KNLTGVGGSLPVENVQVLAGKELKNLPNRYVRPELEHDDVVPIDNSL--EIPVIDLSRLLDQQYACDELAKFHSACLDWGFFQLINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLPNGMEGYGQAFVTSEEQKLDWADMHFLITKPVQERNMRFWPTSPTSFRETMEKYSMELQKVAMCLTGMMAKNLGLESE 196          

HSP 2 Score: 23.0978 bits (48), Expect = 6.723e-40
Identity = 10/10 (100.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  690 EDELLPSMSS 719
            EDELLPSMSS
Sbjct:  209 EDELLPSMSS 218          
BLAST of FC932404 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.833e-24
Identity = 67/216 (31.02%), Postives = 111/216 (51.39%), Query Frame = 1
Query:  112 VQELVKNPALVVPDRYIRPDQDSPLISDDILIS------QIPVIDMQSLLSKESMDSE--LAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYW--QRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKD---EEMIEFFEKWTAGMRMNYYPPCPQ 720
            V+ L K+  + +P  YIRP ++   I+D  L        Q+P ID++++ S +    E  + +L  A  +WG   L+NHG+    +E++KK  E FF+LS+EEK+KY   Q  G ++G+G     +   +L+W D F  +  P   R   ++PK P    E    Y+  L+ LA  +   +   L ++    E+ +   E+    M++NYYP CPQ
Sbjct:    7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQ 222          
BLAST of FC932404 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.452e-21
Identity = 66/224 (29.46%), Postives = 110/224 (49.11%), Query Frame = 1
Query:  100 LVPCVQELVKNPALVVPDRYIRPDQDSPLISDDILIS------QIPVIDMQSLLSKESM------DSELAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYW--QRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKD---EEMIEFFEKWTAGMRMNYYPPCPQ 720
            + P V+ L  +    +P  YIRP ++   I +           Q+P ID++ + S++ +      +    +L  A  EWG   LVNHG+S   + ++K   E FFNL MEEK+KY   Q  G + G+G     +   +L+W D F  +  P   R   ++PK P         YS++L++LA  ++S +   L +++   E+ +   E+     ++NYYP CPQ
Sbjct:    5 VAPRVESLSSSGIQSIPKEYIRPQEELTSIGNVFEEEKKDEGPQVPTIDLKDIESEDEVVRREIRERCREELKKAAMEWGVMHLVNHGISDDLINRVKVAGETFFNLPMEEKEKYANDQASGKIAGYGSKLANNASGQLEWEDYFFHLIFPEDKRDMTIWPKTPSDYVPATCEYSVKLRSLATKILSVLSLGLGLEEGRLEKEVGGMEELLLQKKINYYPKCPQ 228          
BLAST of FC932404 vs. ExPASy Swiss-Prot
Match: LDOX_PERFR (Leucoanthocyanidin dioxygenase OS=Perilla frutescens GN=ANS PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 60/219 (27.40%), Postives = 109/219 (49.77%), Query Frame = 1
Query:  106 PCVQELVKNPALVVPDRYIRPDQDSPLISDDILIS-------QIPVIDMQSLLSKESMDSELA--KLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYW--QRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKD---EEMIEFFEKWTAGMRMNYYPPCPQ 720
            P V+EL ++    +P  Y+RP+++   I  +IL         Q+P ID++ + S++    +    +L  A  +WG   L+NHG+    ++++K   + FF L +EEK+ Y   Q  G+++G+G     +   +L+W D F     P H     ++P  PP        Y+ +L+ LA  ++S +   L ++    E+ +   E     M++N+YP CPQ
Sbjct:   10 PRVEELARSGLDTIPKDYVRPEEELKSIIGNILAEEKSSEGPQLPTIDLEEMDSRDEEGRKKCHEELKKAATDWGVMHLINHGIPEELIDRVKAAGKEFFELPVEEKEAYANDQAAGNVQGYGSKLANNASGQLEWEDYFFHCVYPEHKTDLSIWPTKPPDYIPATSEYAKQLRALATKILSVLSIGLGLEKGRLEKEVGGAEDLIVQMKINFYPKCPQ 228          
BLAST of FC932404 vs. ExPASy Swiss-Prot
Match: FNSI_PETCR (Flavone synthase OS=Petroselinum crispum GN=FNSI PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.414e-21
Identity = 52/190 (27.37%), Postives = 98/190 (51.58%), Query Frame = 1
Query:  157 YIRPDQDSPLISDDILISQIPVIDMQSLLS-KESMDSELA-KLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMIEFFEKWTAGMRMNYYPPCPQ 720
            ++R + + P ++ +   ++IP+I +  L    +    E+  K+  AC++WG FQ+V+HG+ +  + ++ +    FF L  EEK +Y    G   GF  + V+  +  +DW +  +  + P++ R    +PK P   R T EVYS +L  L   L+  + E + ++  ++ +        + +NYYP CPQ
Sbjct:   19 FVRDEDERPKVAYNQFSNEIPIISLAGLDDDSDGRRPEICRKIVKACEDWGIFQVVDHGIDSGLISEMTRLSREFFALPAEEKLEYDTTGGKRGGFTISTVLQGDDAMDWREFVTYFSYPINARDYSRWPKKPEGWRSTTEVYSEKLMVLGAKLLEVLSEAMGLEKGDLTKACVDMEQKVLINYYPTCPQ 208          
BLAST of FC932404 vs. ExPASy Swiss-Prot
Match: LDOX_PETHY (Leucoanthocyanidin dioxygenase OS=Petunia hybrida GN=ANT17 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.606e-20
Identity = 62/215 (28.84%), Postives = 106/215 (49.30%), Query Frame = 1
Query:  112 VQELVKNPALVVPDRYIRPDQDSPLISDDILIS------QIPVIDMQSLLSKESMDSELA-KLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYW--QRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKD---EEMIEFFEKWTAGMRMNYYPPCPQ 720
            V+ L K+    +P  Y+RP ++   I +           Q+P ID++ + S++    E   +L  A  EWG   LVNHG+S   + ++K   E FF+  +EEK+KY   Q  G+++G+G     S   +L+W D F     P   R   ++PK P         Y+ +++ LA  +++ +   L +++   E+ +   E     M++NYYP CPQ
Sbjct:   12 VESLAKSGIQAIPKEYVRPQEELNGIGNIFEEEKKDEGPQVPTIDLKEIDSEDKEIREKCHQLKKAAMEWGVMHLVNHGISDELINRVKVAGETFFDQPVEEKEKYANDQANGNVQGYGSKLANSACGQLEWEDYFFHCAFPEDKRDLSIWPKNPTDYTPATSEYAKQIRALATKILTVLSIGLGLEEGRLEKEVGGMEDLLLQMKINYYPKCPQ 226          
BLAST of FC932404 vs. ExPASy Swiss-Prot
Match: FLS_SOLTU (Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.606e-20
Identity = 61/198 (30.81%), Postives = 103/198 (52.02%), Query Frame = 1
Query:  145 VPDRYIRPDQDSPLISD-DILISQIPVIDMQSLLSKESMDSELAKLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFN-LSMEEKKKYWQRPG--DMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKDEEMIEF--FEKWTAGMRMNYYPPCPQ 720
            +P  YIR + + P  +    ++ ++PVID+ ++   E  +  + ++  A KEWG FQ++NHG+    +E L+K  + FF  +  EEK+   ++PG   +EG+G +     E K  W D       P        +PK PPS RE  E Y+  L+ +A+ +   +   L ++  EM+E    E     +++NYYPPCP+
Sbjct:   33 IPSEYIRSENEQPAATTLQGVVLEVPVIDISNVDDDE--EKLVKEIVEASKEWGIFQVINHGIPDEVIENLQKVGKEFFEEVPQEEKELIAKKPGAQSLEGYGTSLQKEIEGKKGWVDHLFHKIWPPSAINYRYWPKNPPSYREANEEYAKWLRKVADGIFRSLSLGLGLEGHEMMEAAGSEDIVYMLKINYYPPCPR 228          
BLAST of FC932404 vs. ExPASy Swiss-Prot
Match: LDOX_MALDO (Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.739e-20
Identity = 63/216 (29.17%), Postives = 107/216 (49.54%), Query Frame = 1
Query:  112 VQELVKNPALVVPDRYIRPDQDSPLISDDILIS------QIPVIDMQSLLS-KESMDSELA-KLDFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYW--QRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSLRETLEVYSMELKTLAENLISKMGEVLNIKD---EEMIEFFEKWTAGMRMNYYPPCPQ 720
            V+ L  +    +P  YIRP  +   I D           Q+P ID++ + S  E + ++   KL  A  +WG   LVNHG+S   ++K++K  + FF+L +E+K+KY   Q  G ++G+G     +   +L+W D F     P   R   ++P+ P    E    Y+ +L+ LA  ++  +   L + +   E+ +   E+    M++NYYP CPQ
Sbjct:   11 VETLAGSGISTIPKEYIRPKDELVNIGDIFEQEKNNEGPQVPTIDLKEIESDNEKVRAKCREKLKKAAVDWGVMHLVNHGISDELMDKVRKAGKAFFDLPIEQKEKYANDQASGKIQGYGSKLANNASGQLEWEDYFFHCVYPEDKRDLSIWPQTPADYIEATAEYAKQLRELATKVLKVLSLGLGLDEGRLEKEVGGLEELLLQMKINYYPKCPQ 226          
BLAST of FC932404 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.577e-20
Identity = 60/211 (28.44%), Postives = 109/211 (51.66%), Query Frame = 1
Query:  121 LVKNPALV-----VPDRYIRPDQDSPLISDDILISQIPVIDMQSLLSKESMDSELAKL-DFACKEWGFFQLVNHGMSTAFLEKLKKEVEGFFNLSMEEKKKYWQRPGDMEGFGQAFVVSEEQKLDWADLFSMMTLPVHLRKPHLFPKLPPSL-------RETLEVYSMELKTLAENLISKMGEVLNIKDEEMIEFFEKWTAGMRMNYYPPC 714
            L+ NP+++     +P+++I PD + P I+  +L   +P+ID+Q+LLS  S   + ++L   ACK+ GFF +VNHG+S   +    +    FF++ + EK++  ++ G+  G+  +F      KL W +  S        R   +      +L        +  + Y   + +L+  ++  +G  L +K +   EFFE+  + MR+NYYPPC
Sbjct:   27 LIFNPSMLNLQANIPNQFIWPDDEKPSIN--VLELDVPLIDLQNLLSDPSSTLDASRLISEACKKHGFFLVVNHGISEELISDAHEYTSRFFDMPLSEKQRVLRKSGESVGYASSFTGRFSTKLPWKETLSFRFCDDMSRSKSVQDYFCDALGHGFQPFGKVYQEYCEAMSSLSLKIMELLGLSLGVKRDYFREFFEENDSIMRLNYYPPC 235          
The following BLAST results are available for this feature:
BLAST of FC932404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
SRG1_ARATH3.409e-7159.91Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
NCS1_COPJA6.723e-4044.90S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
LDOX_ARATH1.833e-2431.02Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
LDOX_VITVI1.452e-2129.46Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
LDOX_PERFR1.897e-2127.40Leucoanthocyanidin dioxygenase OS=Perilla frutesce... [more]
FNSI_PETCR9.414e-2127.37Flavone synthase OS=Petroselinum crispum GN=FNSI P... [more]
LDOX_PETHY1.606e-2028.84Leucoanthocyanidin dioxygenase OS=Petunia hybrida ... [more]
FLS_SOLTU1.606e-2030.81Flavonol synthase/flavanone 3-hydroxylase OS=Solan... [more]
LDOX_MALDO2.739e-2029.17Leucoanthocyanidin dioxygenase OS=Malus domestica ... [more]
GAOX1_ARATH3.577e-2028.44Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionC34208C04EF PostHarveN Citrus clementina cDNA clone C34208C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932404 ID=FC932404; Name=FC932404; organism=Citrus clementina; type=EST; length=721bp
GATTGTCAGCACTCAGTCTTGTTCCAAAACCAATACAAAGCTGCAGCAAT
CTTGAAAGGATTTGAGGAACAAAAGATGGCCCAGATTGGAAGTTCTCTCC
TTGTGCCTTGTGTTCAAGAGTTGGTCAAGAATCCGGCGTTAGTTGTCCCC
GACAGATACATACGTCCAGATCAAGATTCACCCCTCATTTCTGATGATAT
TTTGATTTCACAGATACCAGTTATTGACATGCAAAGCTTACTTTCTAAAG
AATCAATGGATTCTGAGTTAGCCAAGCTCGACTTCGCATGCAAAGAATGG
GGTTTTTTCCAGCTGGTAAATCATGGAATGAGCACAGCATTTCTAGAGAA
ATTAAAGAAAGAGGTTGAGGGATTCTTCAATCTCAGCATGGAAGAAAAGA
AAAAATATTGGCAGCGTCCAGGAGATATGGAAGGATTTGGACAAGCCTTT
GTTGTATCGGAGGAACAAAAGCTTGATTGGGCTGACCTTTTCTCCATGAT
GACTCTTCCAGTTCATCTGAGGAAACCACATTTATTTCCTAAGCTCCCTC
CTTCCCTCAGAGAGACCTTGGAAGTTTACTCAATGGAATTAAAAACCCTA
GCCGAGAACCTAATATCGAAAATGGGAGAAGTGTTAAATATCAAAGATGA
AGAAATGATAGAATTCTTTGAAAAATGGACTGCAGGAATGAGGATGAATT
ATTACCCTCCATGTCCTCAGC
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