FC932409

Overview
NameFC932409
Unique NameFC932409
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length356
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932409 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 8.029e-29
Identity = 59/107 (55.14%), Postives = 67/107 (62.62%), Query Frame = 2
Query:   35 LLASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACPGKGFYTYDAFIAAANSF 355
            L+ SAEQCG QAGG VCPGG CCSKFG+CGNT  YC +GCQSQCS                            R +F  +LKHRN+ +CPGKGFYTYDAFIAAA +F
Sbjct:   16 LVGSAEQCGGQAGGRVCPGGACCSKFGWCGNTADYCGSGCQSQCSS------------------TGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAF 104          
BLAST of FC932409 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.789e-28
Identity = 61/109 (55.96%), Postives = 69/109 (63.30%), Query Frame = 2
Query:   35 LLASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYC--TNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACPGKGFYTYDAFIAAANSF 355
            +L SAEQCG QAGGA+CPGGLCCS+FG+CGNT  YC   NGCQSQCSG                           R+ F+Q+L HRND  CP +GFYTYDAFIAAA SF
Sbjct:   17 ILGSAEQCGRQAGGALCPGGLCCSQFGWCGNTDDYCKKENGCQSQCSG--------------SGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSF 111          
BLAST of FC932409 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.159e-27
Identity = 60/108 (55.56%), Postives = 69/108 (63.89%), Query Frame = 2
Query:   35 LLASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCT-NGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACPGKGFYTYDAFIAAANSF 355
            ++ SAEQCG QAGGA+CPGGLCCS+FG+CG+T  YCT  GCQSQCSG                           R+ F Q+L HRND ACP +GFYTYDAFIAAA SF
Sbjct:   18 VVGSAEQCGRQAGGALCPGGLCCSQFGWCGSTADYCTVPGCQSQCSG------------SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSF 113          
BLAST of FC932409 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.514e-27
Identity = 57/102 (55.88%), Postives = 67/102 (65.69%), Query Frame = 2
Query:   50 EQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACPGKGFYTYDAFIAAANSF 355
            EQCGSQAGGA+CP  LCCS++G+CG+T AYC +GCQSQCSG                           R LF+Q+L HRNDAACP K FYTYDAF+AAAN+F
Sbjct:   21 EQCGSQAGGALCPNCLCCSQYGWCGSTSAYCGSGCQSQCSG----SCGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAF 118          
BLAST of FC932409 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 3.373e-27
Identity = 57/104 (54.81%), Postives = 66/104 (63.46%), Query Frame = 2
Query:   44 SAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACPGKGFYTYDAFIAAANSF 355
            SAEQCG+QAGGA+CPGGLCCSKFG+CG+T  YC +GCQSQCSG                            D F  +LKHRND AC GK FYTYDAF++AA +F
Sbjct:   19 SAEQCGTQAGGALCPGGLCCSKFGWCGSTSEYCGDGCQSQCSGSSGGGTLSSLISG---------------DTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAF 107          
BLAST of FC932409 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.406e-27
Identity = 58/105 (55.24%), Postives = 64/105 (60.95%), Query Frame = 2
Query:   41 ASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACPGKGFYTYDAFIAAANSF 355
            + AEQCGSQAGGAVCP GLCCSKFGFCG+T  YC +GCQSQC                               LF+Q+LK+RND  C G GFYTYDAFIAAA SF
Sbjct:   21 SKAEQCGSQAGGAVCPNGLCCSKFGFCGSTDPYCGDGCQSQCKS------SPTPTIPTPSTGGGDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSF 119          
BLAST of FC932409 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.815e-27
Identity = 54/103 (52.43%), Postives = 64/103 (62.14%), Query Frame = 2
Query:   47 AEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACPGKGFYTYDAFIAAANSF 355
            AEQCGSQAGGA+CP  LCCS +G+CG+T  YC +GCQSQC G                           ++LFEQLL HRNDAACP +GFYTYDA + AA +F
Sbjct:   23 AEQCGSQAGGALCPNCLCCSSYGWCGSTSDYCGDGCQSQCDGCGGGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAF 125          
BLAST of FC932409 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 1.674e-26
Identity = 58/103 (56.31%), Postives = 65/103 (63.11%), Query Frame = 2
Query:   50 EQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCT-NGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACPGKGFYTYDAFIAAANSF 355
            EQCG QAGGA+CPGGLCCS+FG+CG+T  YCT  GCQSQCSG                           R+ F Q+L HRND ACP +GFYTYDAFIAAA SF
Sbjct:    1 EQCGRQAGGALCPGGLCCSQFGWCGSTADYCTVPGCQSQCSG------------SGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSF 91          
BLAST of FC932409 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.856e-26
Identity = 55/102 (53.92%), Postives = 63/102 (61.76%), Query Frame = 2
Query:   50 EQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACPGKGFYTYDAFIAAANSF 355
            EQCG QAGGA+CPGG CCS+FG+CG+T  YC  GCQSQC G                           R  F+Q+LKHRND ACP KGFYTYDAFIAAA ++
Sbjct:   28 EQCGRQAGGALCPGGNCCSQFGWCGSTTDYCGPGCQSQCGG--------------PSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAY 115          
BLAST of FC932409 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 117.087 bits (292), Expect = 2.856e-26
Identity = 58/108 (53.70%), Postives = 69/108 (63.89%), Query Frame = 2
Query:   32 ALLASAEQCGSQAGGAVCPGGLCCSKFGFCGNTPAYCTNGCQSQCSGXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLFEQLLKHRNDAACPGKGFYTYDAFIAAANSF 355
            A +A AEQCGSQAGGA CP  LCCS+FG+CG+TP YC +GCQSQCSG                           R LF+++L HRND AC  KGFYTYDAF+AAA++F
Sbjct:   14 ATMAVAEQCGSQAGGATCPNCLCCSRFGWCGSTP-YCGDGCQSQCSG----CGGGSTPVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAF 116          
The following BLAST results are available for this feature:
BLAST of FC932409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
CHIB_VITVI8.029e-2955.14Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI1_THECC1.789e-2855.96Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI1_GOSHI1.159e-2755.56Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI1_ORYSJ1.514e-2755.88Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_PEA3.373e-2754.81Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHIX_PEA4.406e-2755.24Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI9_ORYSJ9.815e-2752.43Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_GOSHI1.674e-2656.31Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHIT_PHAVU2.856e-2653.92Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI1_HORVU2.856e-2653.7026 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC34208C09EF PostHarveN Citrus clementina cDNA clone C34208C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932409 ID=FC932409; Name=FC932409; organism=Citrus clementina; type=EST; length=356bp
TTTTCTTGGACAAAGTGGGCTTTATAAGAAAGCATTGCTGGCGTCGGCTG
AACAGTGTGGCAGCCAGGCTGGAGGAGCTGTATGTCCAGGAGGACTGTGT
TGCAGCAAATTTGGCTTCTGCGGCAACACTCCTGCTTATTGCACCAATGG
CTGCCAAAGCCAGTGCAGTGGGTCACCCTCACCCACGCCGACTAATCCGA
CTCCCGTACCTGCTCCAAGCGGCGGCGGGAACAATATCGGTTCACTAATT
AGCAGGGACCTATTTGAACAGCTGTTGAAGCATCGTAATGATGCTGCTTG
CCCAGGAAAAGGTTTTTACACTTACGACGCTTTCATCGCTGCCGCCAATT
CCTTTG
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