FC932410

Overview
NameFC932410
Unique NameFC932410
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932410 vs. ExPASy Swiss-Prot
Match: SYFA_ARATH (Probable phenylalanyl-tRNA synthetase alpha chain OS=Arabidopsis thaliana GN=At4g39280 PE=2 SV=3)

HSP 1 Score: 337.421 bits (864), Expect = 4.340e-92
Identity = 166/207 (80.19%), Postives = 184/207 (88.89%), Query Frame = 2
Query:   74 MAEEAILGYLEKNEQISDSGNFAAERGFDHNDVINVIKSLHGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEMGKQVSRKVQNVEDKVKDLLLQVQNGHALSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKVATDLTRENLQKGDWKEIGVQEYNFNAKG 694
            MAEEAILG+L+ NEQI+DSG F+AE   DHN+++NVIKSLHGFRYID QDIK+ETW+LT EGKKYAAEGSPEVQLFLAVP EGSISKDELQKKL PAVFKIGCSQAGKNKWVEMGKQVSRKV++VEDKVK  LLQ+Q G    KE I+SLKARKLIVPQ WKGYSV+KGPNYAP+RKKVATDLTRENLQ  +WKE+  +EYNF AKG
Sbjct:    1 MAEEAILGFLQNNEQITDSGQFSAEFNIDHNELVNVIKSLHGFRYIDVQDIKKETWILTDEGKKYAAEGSPEVQLFLAVPEEGSISKDELQKKLAPAVFKIGCSQAGKNKWVEMGKQVSRKVKDVEDKVKGQLLQIQQGKEFDKESINSLKARKLIVPQIWKGYSVKKGPNYAPERKKVATDLTRENLQ--NWKELEFKEYNFKAKG 205          
BLAST of FC932410 vs. ExPASy Swiss-Prot
Match: SYFA_DANRE (Phenylalanyl-tRNA synthetase alpha chain OS=Danio rerio GN=farsa PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.795e-29
Identity = 81/213 (38.03%), Postives = 123/213 (57.75%), Query Frame = 2
Query:   83 EAILGYLEKNEQISDSGNFAAERGFDHNDVINVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEM------GKQVSRKVQNVEDKVKDLLLQVQNGHA--LSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKVATDLTRENLQKGDWKEIGVQEYNFNAKG 694
            EA+L  +E+ +   DS + +A  G DH  V+  +KSL      I A+    + W LTGEG++ A +GS E ++F A+PAEG + +++L K    A  K+G S+A  NKW+ +      G +V R V+++ED V+D L  VQNG +  L ++E + LK RKL+   T K Y + KG +++    K  T+LT E +  G+WKE   + YNF A G
Sbjct:    8 EALLQRVEQLDGGVDSQDVSAALGVDHQLVVGAVKSLQALGEVISAEQKSSKHWELTGEGREIAEQGSHEARVFNAIPAEG-LPQNQLMKM---ASGKVGFSKAMSNKWIRLDKAHEGGPRVFRTVESIEDTVRDKLQLVQNGQSAKLEEKEKNELKKRKLLAEVTVKSYWITKGNSFSTTITKQETELTPEMIASGNWKEKKFKPYNFEAMG 216          
BLAST of FC932410 vs. ExPASy Swiss-Prot
Match: SYFA_CHICK (Phenylalanyl-tRNA synthetase alpha chain OS=Gallus gallus GN=FARSA PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.138e-26
Identity = 79/222 (35.59%), Postives = 119/222 (53.60%), Query Frame = 2
Query:   68 SAMAEEAILGYLEKNEQISDSG----NFAAERGFDHNDVINVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEM------GKQVSRKVQNVEDKVKDLLLQVQ--NGHALSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKVATDLTRENLQKGDWKEIGVQEYNFNAKG 694
            S    E +L  LE+     + G      AA  G DH  ++  +KSL      I+A+      W L+ EG++   +GSPEV+LF +VP+EG    D +  KL  A  ++G S+A  NKW+ +      G ++ R V  V+D V+  L QVQ  NG +LS+ E + LK RKL++  T K Y +RKG  ++    +  TDLT E +  G W+++  + YNF+A G
Sbjct:    2 SPSVAELLLQRLERTPPGPEGGLCSLEAAAALGLDHQTLVGAVKSLQALGEVIEAETRATTRWELSAEGEEVLRDGSPEVRLFRSVPSEGLPQSDAM--KLPGA--QVGFSKAMANKWLRLDKGAPGGPRIFRAVDAVQDVVQSSLRQVQEGNGGSLSERERTDLKRRKLLLEVTLKSYWIRKGSAFSTAVVRQETDLTPEMIATGSWRKLPFKAYNFSALG 219          
BLAST of FC932410 vs. ExPASy Swiss-Prot
Match: SYFA_RAT (Phenylalanyl-tRNA synthetase alpha chain OS=Rattus norvegicus GN=Farsa PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.803e-25
Identity = 71/220 (32.27%), Postives = 118/220 (53.64%), Query Frame = 2
Query:   74 MAEEAILGYLEKNEQISDSG----NFAAERGFDHNDVINVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEM------GKQVSRKVQNVEDKVKDLLLQVQNGHA--LSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKVATDLTRENLQKGDWKEIGVQEYNFNAKG 694
            MA+  +L  L +  +++D G      A + G +H  V+  +KSL      I+A+    + W LT EG++ A EGS E ++F ++P EG +  + +Q        K+G S+A  NKW+ +      G +V R V ++ED+V+  L QVQ G A  L+++E + L+ RKL+     K Y V KG  ++    K   +L+ E +  G W++   + YNF+A+G
Sbjct:    1 MADNPVLEQLLRRLEVADGGLDSAELATQLGVEHQAVVGAVKSLQALGEVIEAELRSTKCWELTTEGEEIAREGSHEARVFRSIPLEGLVQSELMQLPSG----KVGFSKAMSNKWIRVDKSAADGPRVFRVVDSIEDEVQRRLQQVQAGQAEKLAEKERNELRKRKLLTEVILKTYWVSKGKGFSTSVSKQEAELSPEMISSGSWRDRPFKPYNFSARG 216          
BLAST of FC932410 vs. ExPASy Swiss-Prot
Match: SYFA_HUMAN (Phenylalanyl-tRNA synthetase alpha chain OS=Homo sapiens GN=FARSA PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 7.803e-25
Identity = 75/213 (35.21%), Postives = 116/213 (54.46%), Query Frame = 2
Query:   83 EAILGYLEKNEQISDSGNFAAERGFDHNDVINVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEM------GKQVSRKVQNVEDKVKDLLLQVQNGHA--LSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKVATDLTRENLQKGDWKEIGVQEYNFNAKG 694
            E +L  LE ++   DS   AAE G +H  V+  +KSL      I+A+    + W LT EG++ A EGS E ++F ++P EG +++ EL +       K+G S+A  NKW+ +      G +V R V ++ED+V+  L  V+ G A  L ++E S L+ RKL+   T K Y V KG  ++    K  T+L+ E +  G W++   + YNF A G
Sbjct:    8 ELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEGEEIAREGSHEARVFRSIPPEG-LAQSELMRLPSG---KVGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHG 216          
BLAST of FC932410 vs. ExPASy Swiss-Prot
Match: SYFA_PONAB (Phenylalanyl-tRNA synthetase alpha chain OS=Pongo abelii GN=FARSA PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.965e-24
Identity = 74/213 (34.74%), Postives = 115/213 (53.99%), Query Frame = 2
Query:   83 EAILGYLEKNEQISDSGNFAAERGFDHNDVINVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEM------GKQVSRKVQNVEDKVKDLLLQVQNGHA--LSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKVATDLTRENLQKGDWKEIGVQEYNFNAKG 694
            E +L  LE ++   DS   AAE G +H  V+  +KSL      I+A+    + W LT EG++ A EGS E ++F ++P EG +++ EL +       K+G S+A  NKW+ +      G +V R V ++ED+V+  L  V+ G A  L ++E S L+ RKL+     K Y V KG  ++    K  T+L+ E +  G W++   + YNF A G
Sbjct:    8 ELLLRRLEASDGGLDSAELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKRWELTAEGEEIAREGSHEARVFRSIPPEG-LAQSELMRLPSG---KVGFSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRKLLAEVILKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYNFLAHG 216          
BLAST of FC932410 vs. ExPASy Swiss-Prot
Match: SYFA_MOUSE (Phenylalanyl-tRNA synthetase alpha chain OS=Mus musculus GN=Farsa PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23
Identity = 69/220 (31.36%), Postives = 116/220 (52.73%), Query Frame = 2
Query:   74 MAEEAILGYLEKNEQISDSG----NFAAERGFDHNDVINVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEM------GKQVSRKVQNVEDKVKDLLLQVQNGHA--LSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKVATDLTRENLQKGDWKEIGVQEYNFNAKG 694
            MA+  +L  L +  +++D G      A + G +H  V+  +KSL      I+A+    + W LT EG++ A EGS E ++F ++P EG +  + +         K+G S+A  NKW+ +      G +V R V ++ED+V+  L  VQ G A  L+++E + L+ RKL+     K Y V KG  ++    K   +L+ E +  G W++   + YNF+A+G
Sbjct:    1 MADNPVLELLLRRLEVADGGLDSAELATQLGVEHQAVVGAVKSLQALGEVIEAELRSTKCWELTTEGEEIAREGSHEARVFRSIPLEGLVQSELMHLPSG----KVGFSKAMSNKWIRVDKSAADGPRVFRVVDSIEDEVQKRLQLVQAGQAEKLAEKERNELRKRKLLTEVILKTYWVSKGKAFSTSVSKQEAELSPEMISSGSWRDRPFKPYNFSARG 216          
BLAST of FC932410 vs. ExPASy Swiss-Prot
Match: SYFAA_XENLA (Phenylalanyl-tRNA synthetase alpha chain A OS=Xenopus laevis GN=farsa-A PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.539e-23
Identity = 66/199 (33.17%), Postives = 104/199 (52.26%), Query Frame = 2
Query:  125 DSGNFAAERGFDHNDVINVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEM------GKQVSRKVQNVEDKVKDLLLQVQNGHA--LSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKVATDLTRENLQKGDWKEIGVQEYNFNAKG 694
            DS   AA  G +H  V+  +KSL      I A+    + W L+ EG++   EGS E ++F  +P EG +    +++       K+G S+A  NKW+ +      G ++ R V ++ED VK+ L  +  G A  +++++ + LK RKL+   T K Y V KG  ++    K  TDLT E +  G W+E   + YNF+A G
Sbjct:   23 DSLELAALLGVEHQQVVGAVKSLQCLGEIIQAEQRSSKKWELSSEGEEIGREGSHEARVFQTLPKEGLLQAQLMKQPFS----KVGFSKAMSNKWIRLDKAAEGGPRIYRVVDSIEDTVKEKLQLILKGRADDVNEKDRNELKKRKLVNEVTVKSYWVTKGSGFSTSITKQETDLTPEMIASGSWREKQFKGYNFDALG 217          
BLAST of FC932410 vs. ExPASy Swiss-Prot
Match: SYFAB_XENLA (Phenylalanyl-tRNA synthetase alpha chain B OS=Xenopus laevis GN=farsa-B PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.627e-22
Identity = 70/199 (35.18%), Postives = 106/199 (53.27%), Query Frame = 2
Query:  125 DSGNFAAERGFDHNDVINVIKSLHGF-RYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEMGKQ------VSRKVQNVEDKVKDLLLQVQNGHA--LSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKVATDLTRENLQKGDWKEIGVQEYNFNAKG 694
            D+   AA    DH  V+  +KSL      I+A+    + W L+ EG++ A  GS E ++F ++P EG +  + +  KL  A  K+G S+A  NKW+ + K       V R V+ +ED VK+ L  +  G A  +++++ + LK RKL+   T K Y V KG  ++    K  TDLT E +  G W+E   + YNFNA G
Sbjct:   23 DTLELAAVLSVDHQQVVGAVKSLQCLGEIIEAEQRSSKKWELSSEGEEIAQVGSHEARVFQSLPKEGLLQAELM--KLPFA--KVGFSKAMSNKWIRLDKAAAGGPCVYRVVETIEDTVKEKLQLILKGRADDVNEKDKNELKKRKLVNEVTVKSYWVTKGSGFSTSITKQETDLTPEMIASGSWREKQFKGYNFNALG 217          
BLAST of FC932410 vs. ExPASy Swiss-Prot
Match: SYFA_DROME (Probable phenylalanyl-tRNA synthetase alpha chain OS=Drosophila melanogaster GN=CG2263 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.872e-19
Identity = 70/213 (32.86%), Postives = 112/213 (52.58%), Query Frame = 2
Query:   83 EAILGYLEKNEQISDSGNFAAERGFDHNDVINVIKSL--HGFRYIDAQDIKRETWVLTGEGKKYAAEGSPEVQLFLAVPAEGSISKDELQKKLDPAVFKIGCSQAGKNKWVEMGKQVS-----RKVQNVEDKVKDLLLQVQ--NGHALSKEEISSLKARKLIVPQTWKGYSVRKGPNYAPKRKKVATDLTRENLQKGDWKEIGVQEYNFNAKG 694
            E IL +LE  ++ +D+ + AA    DH  ++  +KS+  HG   + A+ +  ++  LT EG+     GS E  ++  VP EG I++  L      A  K+G S+A  + W+ + K V+     RKV  + D V++ L QV    G  L  +E++  K RKL+   T K + + +GP +A    K+ TDLT E L  G W ++  + YNF+A G
Sbjct:    7 ERILQHLETTDK-ADTLDLAALFAEDHQKIVGSLKSIQAHG-ELVTAETVTHKSLGLTDEGRAVVENGSHEALVYDLVPPEG-IAQAALMAA-GGANAKVGFSKAMSHGWILVDKSVTPPLVRRKVDTITDVVRNQLQQVALGKGDQLPAKEVADFKKRKLLQETTTKSFVLARGPEFATTLTKLETDLTVEMLANGLWDQLKFKAYNFDALG 215          
The following BLAST results are available for this feature:
BLAST of FC932410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SYFA_ARATH4.340e-9280.19Probable phenylalanyl-tRNA synthetase alpha chain ... [more]
SYFA_DANRE1.795e-2938.03Phenylalanyl-tRNA synthetase alpha chain OS=Danio ... [more]
SYFA_CHICK4.138e-2635.59Phenylalanyl-tRNA synthetase alpha chain OS=Gallus... [more]
SYFA_RAT7.803e-2532.27Phenylalanyl-tRNA synthetase alpha chain OS=Rattus... [more]
SYFA_HUMAN7.803e-2535.21Phenylalanyl-tRNA synthetase alpha chain OS=Homo s... [more]
SYFA_PONAB2.965e-2434.74Phenylalanyl-tRNA synthetase alpha chain OS=Pongo ... [more]
SYFA_MOUSE2.510e-2331.36Phenylalanyl-tRNA synthetase alpha chain OS=Mus mu... [more]
SYFAA_XENLA9.539e-2333.17Phenylalanyl-tRNA synthetase alpha chain A OS=Xeno... [more]
SYFAB_XENLA1.627e-2235.18Phenylalanyl-tRNA synthetase alpha chain B OS=Xeno... [more]
SYFA_DROME2.872e-1932.86Probable phenylalanyl-tRNA synthetase alpha chain ... [more]

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Properties
Property NameValue
Genbank descriptionC34208C10EF PostHarveN Citrus clementina cDNA clone C34208C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932410 ID=FC932410; Name=FC932410; organism=Citrus clementina; type=EST; length=699bp
AAAATCTGGAAACACTAATCCGAGAGTCACAGAGCGCAACAGCTGACTCT
CCCATTAGAGCGGCGGCAGCGCCATGGCCGAAGAGGCGATTCTAGGGTAC
TTAGAGAAGAATGAGCAAATCTCGGATTCTGGTAACTTCGCCGCCGAACG
CGGGTTTGATCATAACGACGTCATTAATGTCATCAAAAGCCTCCACGGTT
TCCGTTACATCGACGCACAGGACATTAAGAGGGAGACGTGGGTGCTTACC
GGTGAGGGTAAGAAGTATGCTGCTGAAGGGTCACCCGAGGTTCAATTGTT
CTTGGCAGTGCCAGCGGAGGGTAGTATCTCGAAAGACGAATTGCAGAAAA
AGCTTGATCCTGCAGTTTTCAAAATAGGTTGCTCCCAGGCTGGTAAAAAT
AAGTGGGTGGAGATGGGGAAGCAAGTTTCGAGGAAGGTTCAAAATGTGGA
AGACAAAGTCAAAGATTTGCTTCTACAAGTACAAAATGGACATGCGCTTA
GCAAAGAGGAGATTAGCAGTCTCAAAGCACGGAAGCTTATTGTTCCCCAG
ACATGGAAGGGGTACTCAGTGAGAAAAGGTCCTAATTATGCTCCCAAAAG
GAAGAAAGTTGCTACAGATTTGACTCGAGAGAACCTTCAGAAGGGTGATT
GGAAGGAAATTGGAGTTCAAGAGTACAACTTCAATGCTAAAGGACAGCC
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