FC932412

Overview
NameFC932412
Unique NameFC932412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932412 vs. ExPASy Swiss-Prot
Match: PSD7_ARATH (Probable 26S proteasome non-ATPase regulatory subunit 7 OS=Arabidopsis thaliana GN=RPN8 PE=2 SV=1)

HSP 1 Score: 396.356 bits (1017), Expect = 8.168e-110
Identity = 197/220 (89.55%), Postives = 207/220 (94.09%), Query Frame = 1
Query:   55 MDVIKTQQISSRPIEKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYL 714
            MDVIKTQQIS+R IEKV+VHPLVLLSIVD+YNRVAKD+ KRVVGVLLGSS +G VDV+NSYAVPFEEDDKDP IWFLDHNYHESM+ MFKRINAKEHVVGWYSTGPKLRENDLD+H LF+ YVPNPVLVIIDVQPKELGIPTKAYY VEEVKENATQKSQKVFVHV +EIAAHEVEEIGVEHLLRDVKDTTISTLA EVT KLTALKGLDARLREIR YL
Sbjct:    1 MDVIKTQQISARTIEKVVVHPLVLLSIVDHYNRVAKDSSKRVVGVLLGSSSRGVVDVTNSYAVPFEEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPNPVLVIIDVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVSTEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTAKLTALKGLDARLREIRSYL 220          
BLAST of FC932412 vs. ExPASy Swiss-Prot
Match: PSD7_BOVIN (26S proteasome non-ATPase regulatory subunit 7 OS=Bos taurus GN=PSMD7 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.153e-71
Identity = 128/208 (61.54%), Postives = 167/208 (80.29%), Query Frame = 1
Query:   94 IEKVIVHPLVLLSIVDNYNRVAK-DTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYL 714
            ++KV+VHPLVLLS+VD++NR+ K   +KRVVGVLLGS  K  +DVSNS+AVPF+EDDKD  +WFLDH+Y E+MY MFK++NA+E +VGWY TGPKL +ND+ I++L   Y PN VLVIIDV+PK+LG+PT+AY  VEEV ++ T  S K F HV SEI A E EE+GVEHLLRD+KDTT+ TL+  +T ++  LKGL+++L +IRGYL
Sbjct:    6 VQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTS-KTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRGYL 212          
BLAST of FC932412 vs. ExPASy Swiss-Prot
Match: PSD7_DICDI (26S proteasome non-ATPase regulatory subunit 7 OS=Dictyostelium discoideum GN=psmD7 PE=3 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.967e-71
Identity = 128/203 (63.05%), Postives = 164/203 (80.79%), Query Frame = 1
Query:  106 IVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYL 714
            IVHP VLLS+VD+YNRVAKDT KRVVG LLGS+ KG VDVSN Y +PFEED+ +P IWFLDHN+HE+M++MFK+INA+E+VVGWYSTGPK+R  D DI++LF  Y PNPV+VIIDV PKELGIPTK+Y  VEE+ ++ ++ + + F H+PS I A E EEI +EHLLRDVKD++IS+L  ++T K  +LK L   L+E++ YL
Sbjct:    9 IVHPTVLLSVVDHYNRVAKDTNKRVVGALLGSNNKGVVDVSNCYGLPFEEDEANPNIWFLDHNFHENMFAMFKKINARENVVGWYSTGPKIRPADQDINELFRRYTPNPVMVIIDVAPKELGIPTKSYVTVEEINKDTSESTMR-FQHIPSSIDAVEAEEICIEHLLRDVKDSSISSLTTQITDKKISLKHLLTNLQEMQHYL 210          
BLAST of FC932412 vs. ExPASy Swiss-Prot
Match: PSD7_MOUSE (26S proteasome non-ATPase regulatory subunit 7 OS=Mus musculus GN=Psmd7 PE=1 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 5.723e-71
Identity = 127/208 (61.06%), Postives = 166/208 (79.81%), Query Frame = 1
Query:   94 IEKVIVHPLVLLSIVDNYNRVAK-DTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYL 714
            ++KV+VHPLVLLS+VD++NR+ K   +KRVVGVLLGS  K  +DVSNS+AVPF+EDDKD  +WFLDH+Y E+MY MFK++NA+E +VGWY TGPKL +ND+ I++L   Y PN VLVIIDV+PK+LG+PT+AY  VEEV ++ T  S K F HV SEI A E EE+GVEHLLRD+KDTT+ TL+  +T ++  LKGL+++L +IR YL
Sbjct:    6 VQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTS-KTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRSYL 212          
BLAST of FC932412 vs. ExPASy Swiss-Prot
Match: PSD7_HUMAN (26S proteasome non-ATPase regulatory subunit 7 OS=Homo sapiens GN=PSMD7 PE=1 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 5.723e-71
Identity = 127/208 (61.06%), Postives = 166/208 (79.81%), Query Frame = 1
Query:   94 IEKVIVHPLVLLSIVDNYNRVAK-DTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYL 714
            ++KV+VHPLVLLS+VD++NR+ K   +KRVVGVLLGS  K  +DVSNS+AVPF+EDDKD  +WFLDH+Y E+MY MFK++NA+E +VGWY TGPKL +ND+ I++L   Y PN VLVIIDV+PK+LG+PT+AY  VEEV ++ T  S K F HV SEI A E EE+GVEHLLRD+KDTT+ TL+  +T ++  LKGL+++L +IR YL
Sbjct:    6 VQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSVLVIIDVKPKDLGLPTEAYISVEEVHDDGTPTS-KTFEHVTSEIGAEEAEEVGVEHLLRDIKDTTVGTLSQRITNQVHGLKGLNSKLLDIRSYL 212          
BLAST of FC932412 vs. ExPASy Swiss-Prot
Match: PSD7_DROME (26S proteasome non-ATPase regulatory subunit 7 OS=Drosophila melanogaster GN=Mov34 PE=1 SV=6)

HSP 1 Score: 266.929 bits (681), Expect = 7.474e-71
Identity = 131/217 (60.37%), Postives = 172/217 (79.26%), Query Frame = 1
Query:   70 TQQISSRPIEKVIVHPLVLLSIVDNYNRVAK-DTRKRVVGVLLGS-SFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYL 714
            +Q++S   + KVIVHPLVLLS+VD++NR+ K   +KRVVGVLLG    KG +DVSNS+AVPF+EDDKD  +WFLDH+Y E+MY MFK++NA+E VVGWY TGPKL +ND+ I++L   Y PN VLVIID +PK+LG+PT+AY  VEEV ++ +  S K F HVPSEI A E EE+GVEHLLRD+KDTT+ +L+ ++T +L  LKGL+A+LR+I+ YL
Sbjct:    3 SQEVS---VNKVIVHPLVLLSVVDHFNRMGKIGNQKRVVGVLLGCWRSKGVLDVSNSFAVPFDEDDKDKSVWFLDHDYLENMYGMFKKVNARERVVGWYHTGPKLHQNDIAINELVRRYCPNSVLVIIDAKPKDLGLPTEAYISVEEVHDDGSPTS-KTFEHVPSEIGAEEAEEVGVEHLLRDIKDTTVGSLSQKITNQLMGLKGLNAQLRDIKQYL 215          
BLAST of FC932412 vs. ExPASy Swiss-Prot
Match: RPN8_NEUCR (26S proteasome regulatory subunit rpn-8 OS=Neurospora crassa GN=rpn-8 PE=3 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.534e-68
Identity = 125/206 (60.68%), Postives = 158/206 (76.70%), Query Frame = 1
Query:  103 VIVHPLVLLSIVDNYNRVA--KDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYL 714
            V V PLVLLS+VD+YNR    K   KRVVGVLLG +    V VSNS+AVPFEEDDKDP +WFLDHNY ESM  MFK++NA+E ++GWY +GPKLR +DLDI++LF  Y PNP+LVI+DVQPKE G+PT AY+ V+E+K++ T  S K FVH PS I A E EEIGVEHLLRD++D  + TL+  +T ++ +L+GL  RLR+I+ YL
Sbjct:   16 VSVAPLVLLSVVDHYNRTQANKSKSKRVVGVLLGQNDGKNVRVSNSFAVPFEEDDKDPSVWFLDHNYVESMNDMFKKVNAREKLIGWYHSGPKLRASDLDINELFKRYTPNPLLVIVDVQPKETGVPTDAYFAVDEIKDDGTTTS-KTFVHTPSIIEAEEAEEIGVEHLLRDIRDVAVGTLSTRITNQMRSLQGLHHRLRDIQAYL 220          
BLAST of FC932412 vs. ExPASy Swiss-Prot
Match: RPN8_SCHPO (26S proteasome regulatory subunit rpn8 OS=Schizosaccharomyces pombe GN=rpn8 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.734e-68
Identity = 121/206 (58.74%), Postives = 161/206 (78.16%), Query Frame = 1
Query:   97 EKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYL 714
            ++VIVHPLVLLS VD+YNR AK T++RVVG+LLG +    V+V+NSYA+PFEED+K+  +WFLDHN+ ESM  MFK+INA E +VGWY TGP+LR +DL+I+ L   Y+PNPVLVIIDV+PK +G+PT AY+ ++E++++ + KS + FVH+PS I A E EEIGVEHLLRD +D ++ TLA  VT +  +L+GL  RL EI  YL
Sbjct:   15 QQVIVHPLVLLSAVDSYNRSAKGTKRRVVGILLGQNNGDVVNVANSYAIPFEEDEKNASVWFLDHNFMESMNEMFKKINANEKLVGWYHTGPQLRPSDLEINNLLKKYIPNPVLVIIDVKPKSVGLPTNAYFAIDEIEDDGS-KSSRTFVHLPSSIEAEEAEEIGVEHLLRDTRDASVGTLATRVTQQAQSLQGLGQRLTEIADYL 219          
BLAST of FC932412 vs. ExPASy Swiss-Prot
Match: RPN8_ASHGO (26S proteasome regulatory subunit RPN8 OS=Ashbya gossypii GN=RPN8 PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.200e-56
Identity = 107/207 (51.69%), Postives = 151/207 (72.95%), Query Frame = 1
Query:   97 EKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVP-NPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYL 714
            E+V V PLVLLS++D+Y R+     KR VGVLLG +   T+ V+NS+A+PFEED+K+P +WFLDHNY E+M  M K+INAKE ++GWY +GPKLR +DL I+ LF  Y   N +L+I+DV+ + +G+PT AY  +EEVK++ +  +++ FVH+P+ I A E EEIGVEHLLRDV+D     L+  +T +L +L+GL  +LR+I  YL
Sbjct:    6 EQVNVAPLVLLSVLDHYKRMNTPDNKRCVGVLLGDNSGSTIKVTNSFALPFEEDEKNPDVWFLDHNYIENMNDMCKKINAKEKMIGWYHSGPKLRSSDLKINGLFKKYTQGNSLLLIVDVKQQGVGLPTDAYMAIEEVKDDGS-STERTFVHLPTAIEAEEAEEIGVEHLLRDVRDQAAGNLSLRLTNQLKSLQGLQRKLRDIVAYL 211          
BLAST of FC932412 vs. ExPASy Swiss-Prot
Match: RPN8_YEAST (26S proteasome regulatory subunit RPN8 OS=Saccharomyces cerevisiae GN=RPN8 PE=1 SV=3)

HSP 1 Score: 217.238 bits (552), Expect = 6.791e-56
Identity = 105/207 (50.72%), Postives = 150/207 (72.46%), Query Frame = 1
Query:   97 EKVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVP-NPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYL 714
            EKV + PLVLLS +D+Y R      KR VGV+LG +   T+ V+NS+A+PFEED+K+  +WFLDHNY E+M  M K+INAKE ++GWY +GPKLR +DL I++LF  Y   NP+L+I+DV+ + +G+PT AY  +E+VK++ T  ++K F+H+P  I A E EEIGVEHLLRDV+D     L+  +T +L +LKGL ++L+++  YL
Sbjct:    6 EKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKINAKEKLIGWYHSGPKLRASDLKINELFKKYTQNNPLLLIVDVKQQGVGLPTDAYVAIEQVKDDGT-STEKTFLHLPCTIEAEEAEEIGVEHLLRDVRDQAAGGLSIRLTNQLKSLKGLQSKLKDVVEYL 211          
The following BLAST results are available for this feature:
BLAST of FC932412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
PSD7_ARATH8.168e-11089.55Probable 26S proteasome non-ATPase regulatory subu... [more]
PSD7_BOVIN1.153e-7161.5426S proteasome non-ATPase regulatory subunit 7 OS=... [more]
PSD7_DICDI1.967e-7163.0526S proteasome non-ATPase regulatory subunit 7 OS=... [more]
PSD7_MOUSE5.723e-7161.0626S proteasome non-ATPase regulatory subunit 7 OS=... [more]
PSD7_HUMAN5.723e-7161.0626S proteasome non-ATPase regulatory subunit 7 OS=... [more]
PSD7_DROME7.474e-7160.3726S proteasome non-ATPase regulatory subunit 7 OS=... [more]
RPN8_NEUCR4.534e-6860.6826S proteasome regulatory subunit rpn-8 OS=Neurosp... [more]
RPN8_SCHPO7.734e-6858.7426S proteasome regulatory subunit rpn8 OS=Schizosa... [more]
RPN8_ASHGO5.200e-5651.6926S proteasome regulatory subunit RPN8 OS=Ashbya g... [more]
RPN8_YEAST6.791e-5650.7226S proteasome regulatory subunit RPN8 OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionC34208C12EF PostHarveN Citrus clementina cDNA clone C34208C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932412 ID=FC932412; Name=FC932412; organism=Citrus clementina; type=EST; length=716bp
GGAAGTACAGACTACAGAGAGCAAAAGTGACAACAAACACAGAGAGATTC
GAATATGGACGTGATAAAGACGCAGCAAATTTCATCGAGACCCATAGAGA
AGGTCATAGTTCACCCGCTCGTCTTACTAAGCATCGTCGACAATTACAAC
CGCGTCGCCAAGGACACGCGCAAGCGCGTCGTCGGCGTCCTCCTCGGTAG
CTCCTTCAAAGGCACCGTCGATGTCTCCAACAGCTACGCAGTGCCTTTTG
AGGAAGATGACAAAGACCCAGGAATATGGTTTCTCGACCACAACTACCAT
GAATCAATGTATTCAATGTTCAAAAGAATCAATGCCAAGGAGCATGTCGT
AGGTTGGTACAGTACAGGACCCAAGCTACGAGAGAATGATCTTGACATTC
ACCAATTATTTCACAACTATGTCCCAAATCCTGTATTGGTCATTATTGAT
GTCCAACCAAAGGAGCTTGGAATACCCACCAAGGCTTACTATGATGTTGA
GGAGGTTAAAGAGAATGCTACTCAGAAAAGCCAAAAGGTCTTTGTACACG
TGCCATCAGAAATTGCCGCTCATGAAGTCGAAGAAATCGGAGTGGAGCAC
TTGCTAAGGGACGTGAAAGACACCACCATCAGTACACTTGCAAATGAGGT
CACTGGAAAACTTACAGCCCTAAAGGGTCTGGATGCTCGTTTGCGTGAGA
TCCGTGGTTACCTTGA
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