FC932420

Overview
NameFC932420
Unique NameFC932420
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932420 vs. ExPASy Swiss-Prot
Match: KCS6_ARATH (3-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana GN=CUT1 PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.261e-90
Identity = 157/195 (80.51%), Postives = 177/195 (90.77%), Query Frame = 3
Query:   99 MPQI-LPDFSNSVKLKYVKLGYQYLVNHILYLLLVPIMVAILIEVLRLGPYEILNLWKSLHFDLVQILCSSFLIIFIATVYFMSKPRHVYLVDYACYKPPVTCRVPFATFMEHSRLILKNNPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMEAARGEAELVIFSAMDSLLQKTGLKPKDIDILIVNCSLF 680
            MPQ  +P+FS+SVKLKYVKLGYQYLVNH L  LL+PIM  + +E+LR+GP EILN+W SL FDLVQ+LCSSF +IFI+TVYFMSKPR +YLVDY+CYKPPVTCRVPFATFMEHSRLILK+ PKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTM+AAR EA++VIF AMD L +KTGLKPKD+DILIVNCSLF
Sbjct:    1 MPQAPMPEFSSSVKLKYVKLGYQYLVNHFLSFLLIPIMAIVAVELLRMGPEEILNVWNSLQFDLVQVLCSSFFVIFISTVYFMSKPRTIYLVDYSCYKPPVTCRVPFATFMEHSRLILKDKPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMDAARSEAQMVIFEAMDDLFKKTGLKPKDVDILIVNCSLF 195          
BLAST of FC932420 vs. ExPASy Swiss-Prot
Match: KCS5_ARATH (3-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana GN=KCS5 PE=2 SV=1)

HSP 1 Score: 316.62 bits (810), Expect = 7.527e-86
Identity = 149/190 (78.42%), Postives = 175/190 (92.11%), Query Frame = 3
Query:  111 LPDFSNSVKLKYVKLGYQYLVNHILYLLLVPIMVAILIEVLRLGPYEILNLWKSLHFDLVQILCSSFLIIFIATVYFMSKPRHVYLVDYACYKPPVTCRVPFATFMEHSRLILKNNPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMEAARGEAELVIFSAMDSLLQKTGLKPKDIDILIVNCSLF 680
            + DFS+SVKLKYVKLGYQYL+N+ L LLL+P++  + IE+LR+GP EIL++  SLHF+L+ ILCSSFLIIF++TVYFMSKPR VYLVDY+CYKPPVTCRVPF++FMEHSRLILK+NPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTME+AR EA++VIF+AM+ L + TGLKPKDIDILIVNCSLF
Sbjct:    1 MSDFSSSVKLKYVKLGYQYLINNFLTLLLIPVIATVAIELLRMGPEEILSVLNSLHFELLHILCSSFLIIFVSTVYFMSKPRTVYLVDYSCYKPPVTCRVPFSSFMEHSRLILKDNPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMESARNEAQMVIFTAMEDLFKNTGLKPKDIDILIVNCSLF 190          
BLAST of FC932420 vs. ExPASy Swiss-Prot
Match: KCS9_ARATH (3-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana GN=KCS9 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.410e-54
Identity = 102/190 (53.68%), Postives = 135/190 (71.05%), Query Frame = 3
Query:  111 LPDFSNSVKLKYVKLGYQYLVNHILYLLLVPIMVAILIEVLRLGPYEILNLWKSLHFDLVQILCSSFLIIFIATVYFMSKPRHVYLVDYACYKPPVTCRVPFATFMEHSRLILKNNPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMEAARGEAELVIFSAMDSLLQKTGLKPKDIDILIVNCSLF 680
            LP+F  SV +KYVKLGY YL+ H+  L LVP+M  ++ E+ RL   ++  +W  L ++LV  +  S L IF +TVY MS+PR VYLVDY+CY PP + +V +  FM+HS+LI   N  S+EFQ +ILERSGLGEET LP A+H IPP PTM AAR E+E V+F A+D L + T + P+DI +L+VNCSLF
Sbjct:   25 LPNFLQSVNMKYVKLGYHYLITHLFKLCLVPLMAVLVTEISRLTTDDLYQIWLHLQYNLVAFIFLSALAIFGSTVYIMSRPRSVYLVDYSCYLPPESLQVKYQKFMDHSKLIEDFNESSLEFQRKILERSGLGEETYLPEALHCIPPRPTMMAAREESEQVMFGALDKLFENTKINPRDIGVLVVNCSLF 214          
BLAST of FC932420 vs. ExPASy Swiss-Prot
Match: KCS4_ARATH (3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.597e-54
Identity = 101/192 (52.60%), Postives = 139/192 (72.40%), Query Frame = 3
Query:  105 QILPDFSNSVKLKYVKLGYQYLVNHILYLLLVPIMVAILIEVLRLGPYEILNLWKSLHFDLVQILCSSFLIIFIATVYFMSKPRHVYLVDYACYKPPVTCRVPFATFMEHSRLILKNNPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMEAARGEAELVIFSAMDSLLQKTGLKPKDIDILIVNCSLF 680
            ++LPDF  SV LKYVKLGY YL++++L L L P+ V I +E  ++ P ++  LW  L ++LV I+  S +++F  TVY M++PR VYLVD++CY PP   + P+A FMEHSRL    +  ++EFQ +ILERSGLGE+T +P A+HY+PP  +M AAR EAE V+F A+D+L   T +KPKDI IL+VNCSLF
Sbjct:   27 RMLPDFLQSVNLKYVKLGYHYLISNLLTLCLFPLAVVISVEASQMNPDDLKQLWIHLQYNLVSIIICSAILVFGLTVYVMTRPRPVYLVDFSCYLPPDHLKAPYARFMEHSRLTGDFDDSALEFQRKILERSGLGEDTYVPEAMHYVPPRISMAAAREEAEQVMFGALDNLFANTNVKPKDIGILVVNCSLF 218          
BLAST of FC932420 vs. ExPASy Swiss-Prot
Match: KCS11_ARATH (3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.483e-49
Identity = 92/190 (48.42%), Postives = 133/190 (70.00%), Query Frame = 3
Query:  111 LPDFSNSVKLKYVKLGYQYLVNHILYLLLVPIMVAILIEVLRLGPYEILNLWKSLHFDLVQILCSSFLIIFIATVYFMSKPRHVYLVDYACYKPPVTCRVPFATFMEHSRLILKNNPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMEAARGEAELVIFSAMDSLLQKTGLKPKDIDILIVNCSLF 680
            LPDF  SVKLKYVKLGY YL+ H +YL L P+++ I  ++      ++ +LW+ L ++L+ ++  S L++F+ T+YFM++PR VYLV+++C+KP  + +     FM+ S+L      +++EFQ +IL+RSGLGE T LP A+  +PP P M+ AR EAE V+F A+D LL KT + PKDI ILIVNCSLF
Sbjct:   17 LPDFKKSVKLKYVKLGYHYLITHGMYLFLSPLVLVIAAQISTFSVTDLRSLWEHLQYNLISVVVCSMLLVFLMTIYFMTRPRPVYLVNFSCFKPDESRKCTKKIFMDRSKLTGSFTEENLEFQRKILQRSGLGESTYLPEAVLNVPPNPCMKEARKEAETVMFGAIDELLAKTNVNPKDIGILIVNCSLF 206          
BLAST of FC932420 vs. ExPASy Swiss-Prot
Match: KCS19_ARATH (3-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana GN=KCS19 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.450e-44
Identity = 87/193 (45.08%), Postives = 132/193 (68.39%), Query Frame = 3
Query:  102 PQILPDFSNSVKLKYVKLGYQYLVNHILYLLLVPIMVAILIEVLRLGPYEILNLWKSLHFDLVQILCSSFLIIFIATVYFMSKPRHVYLVDYACYKPPVTCRVPFATFMEHSRLILKNNPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMEAARGEAELVIFSAMDSLLQKTGLKPKDIDILIVNCSLF 680
            P  LP+F  SV+LKYVKLGY YL+++ LY+LL+P++ A +  +      ++  L+ +L F  +    ++ L+I ++T YF ++PR V+L+D++CYKP  +      TFM+ S+ +      ++ FQ +ILERSGLG++T  P A+  +PP P ME AR EAE V+F A+D++L+KTG+KPKDI IL+VNCSLF
Sbjct:   25 PNNLPNFLLSVRLKYVKLGYHYLISNALYILLLPLLAATIANLSSFTINDLSLLYNTLRFHFLSATLATALLISLSTAYFTTRPRRVFLLDFSCYKPDPSLICTRETFMDRSQRVGIFTEDNLAFQQKILERSGLGQKTYFPEALLRVPPNPCMEEARKEAETVMFGAIDAVLEKTGVKPKDIGILVVNCSLF 217          
BLAST of FC932420 vs. ExPASy Swiss-Prot
Match: KCS10_ARATH (3-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana GN=FDH PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 8.155e-40
Identity = 85/191 (44.50%), Postives = 122/191 (63.87%), Query Frame = 3
Query:  111 LPDFSNSVKLKYVKLGYQYLVNHILYLLLVPIMVAILIEVLRLGPYEILNLWKSL-HFDLVQILCSSFLIIFIATVYFMSKPRHVYLVDYACYKPPVTCRVPFATFMEHSRLILKNNPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMEAARGEAELVIFSAMDSLLQKTGLKPKDIDILIVNCSLF 680
            LPDF  SV LKYVKLGY YL+NH +YL  +P++V  L+    +G      +WK L  +DL  ++    + +  A VYFMS+PR VYL+D+ACYKP    +V    F+E +R   K + +++ F+ RIL+ SG+G+ET +P +I       TM+  R EA  VIF A+D L +KT +KPKD+ +L+VNCS+F
Sbjct:   39 LPDFLQSVNLKYVKLGYHYLINHAVYLATIPVLV--LVFSAEVGSLSREEIWKKLWDYDLATVIGFFGVFVLTACVYFMSRPRSVYLIDFACYKPSDEHKVTKEEFIELARKSGKFDEETLGFKKRILQASGIGDETYVPRSISSSENITTMKEGREEASTVIFGALDELFEKTRVKPKDVGVLVVNCSIF 227          
BLAST of FC932420 vs. ExPASy Swiss-Prot
Match: KCS2_ARATH (Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana GN=KCS2 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.065e-39
Identity = 85/179 (47.49%), Postives = 115/179 (64.25%), Query Frame = 3
Query:  144 YVKLGYQYLVNHILYLLLVPIMVAILIEVLRLGPYEILNLWKSLHFDLVQILCSSFLIIFIATVYFMSKPRHVYLVDYACYKPPVTCRVPFATFMEHSRLILKNNPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMEAARGEAELVIFSAMDSLLQKTGLKPKDIDILIVNCSLF 680
            YVKLGY YL+ H   L+ +P+M  + + V  L    +   + S  F  V  L      I  + V+FMS+PR +YL+DY+CY PP + +V +  FM +S LI   +  S+EFQ +IL RSGLGEET LP +IH IPP PTM AAR EAE VIF A+D+L + T + P++I +L+VNCSLF
Sbjct:   15 YVKLGYHYLITHFFKLMFLPLMAVLFMNVSLLSLNHLQLYYNSTGFIFVITLA-----IVGSIVFFMSRPRSIYLLDYSCYLPPSSQKVSYQKFMNNSSLIQDFSETSLEFQRKILIRSGLGEETYLPDSIHSIPPRPTMAAAREEAEQVIFGALDNLFENTKINPREIGVLVVNCSLF 188          
BLAST of FC932420 vs. ExPASy Swiss-Prot
Match: KCS17_ARATH (3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.373e-39
Identity = 84/191 (43.98%), Postives = 126/191 (65.97%), Query Frame = 3
Query:  111 LPDFSNSVKLKYVKLGYQYLVNHILYLLLVPI-MVAILIEVLRLGPYEILNLWKSLHFDLVQILCSSFLIIFIATVYFMSKPRHVYLVDYACYKPPVTCRVPFATFMEHSRLILKNNPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMEAARGEAELVIFSAMDSLLQKTGLKPKDIDILIVNCSLF 680
            LP+F  SV+LKYVKLGY YL+++ +Y+L++P+ ++A       L    +L     L F  +     + L+IF+ T+YF ++PR ++L+D+ACYKP  +      TFM+ S+ +      ++ FQ +ILERSGLG++T  P A+  +PP P M  AR EAE V+F A+D++L+KTG+ PKDI IL+VNCSLF
Sbjct:   22 LPNFLLSVRLKYVKLGYHYLISNAVYILILPVGLLAATSSSFSLTDLTLLYN-HLLKFHFLSSTLFAALLIFLTTLYFTTRPRRIFLLDFACYKPDSSLICTRETFMDRSQRVGIFTEDNLAFQQKILERSGLGQKTYFPEALLRVPPNPCMSEARKEAETVMFGAIDAVLEKTGVNPKDIGILVVNCSLF 211          
BLAST of FC932420 vs. ExPASy Swiss-Prot
Match: KCS1_ARATH (3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.669e-32
Identity = 77/195 (39.49%), Postives = 113/195 (57.95%), Query Frame = 3
Query:  111 LPDFSNSVKLKYVKLGYQYLVNH---ILYLLLVPIMVAILIEVLRLGPYEILNLW--KSLHFDLVQILCSSFLIIFIATVYFMSKPRHVYLVDYACYKPPVTCRVPFATFMEHSRLILKNNPKSVEFQMRILERSGLGEETCLPPAIHYIPPTPTMEAARGEAELVIFSAMDSLLQKTGLKPKDIDILIVNCSLF 680
            LPD   SVKLKYVKLG     N    + +L+++P+   +L+++  L       LW  +++  D    L     + F+ T+Y  ++ + VYLVD++CYKP    ++   +F+  +         +V+FQ RI  R+GLG+ET LP  I   PP   M  AR EAE V+F A+DSL +KTG+KP ++ ILIVNCSLF
Sbjct:   34 LPDLLTSVKLKYVKLGLHNSCNVTTILFFLIILPLTGTVLVQLTGLTFDTFSELWSNQAVQLDTATRLTCLVFLSFVLTLYVANRSKPVYLVDFSCYKPEDERKISVDSFLTMTEENGSFTDDTVQFQQRISNRAGLGDETYLPRGITSTPPKLNMSEARAEAEAVMFGALDSLFEKTGIKPAEVGILIVNCSLF 228          
The following BLAST results are available for this feature:
BLAST of FC932420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
KCS6_ARATH2.261e-9080.513-ketoacyl-CoA synthase 6 OS=Arabidopsis thaliana ... [more]
KCS5_ARATH7.527e-8678.423-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana ... [more]
KCS9_ARATH3.410e-5453.683-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana ... [more]
KCS4_ARATH7.597e-5452.603-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana ... [more]
KCS11_ARATH1.483e-4948.423-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana... [more]
KCS19_ARATH2.450e-4445.083-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana... [more]
KCS10_ARATH8.155e-4044.503-ketoacyl-CoA synthase 10 OS=Arabidopsis thaliana... [more]
KCS2_ARATH1.065e-3947.49Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis ... [more]
KCS17_ARATH2.373e-3943.983-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana... [more]
KCS1_ARATH3.669e-3239.493-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC34208D08EF PostHarveN Citrus clementina cDNA clone C34208D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932420 ID=FC932420; Name=FC932420; organism=Citrus clementina; type=EST; length=680bp
GAAATATCTTCTTCTCTTTCGCAACAGATTTTCTCTCTTGCACACAATTC
AGTTTCACGAACGAAATAAAATCAAGAGCCCCAAAAAAAAAAAAAAAAAT
GCCTCAAATCTTGCCTGATTTCTCCAACTCGGTGAAGCTCAAGTATGTTA
AACTGGGCTACCAATATCTGGTCAATCACATTCTTTATCTCTTGCTCGTA
CCTATTATGGTTGCAATTCTCATCGAGGTCCTCCGCTTGGGCCCCTATGA
AATTCTCAACCTTTGGAAATCTCTTCACTTCGATCTTGTCCAAATCCTAT
GCTCATCCTTCCTCATCATATTCATAGCCACCGTTTACTTCATGTCCAAG
CCAAGGCACGTCTACCTCGTCGACTATGCCTGCTACAAGCCCCCCGTCAC
GTGCCGCGTCCCCTTCGCCACATTCATGGAGCACTCGAGGCTGATCTTAA
AAAACAACCCTAAAAGCGTTGAGTTTCAAATGAGGATACTCGAAAGATCC
GGACTCGGTGAAGAGACCTGCTTGCCTCCGGCCATTCATTACATTCCTCC
GACTCCAACAATGGAAGCCGCCAGAGGCGAGGCCGAGCTCGTAATCTTCT
CCGCCATGGATTCTCTGTTACAAAAGACAGGACTTAAACCTAAAGACATC
GATATTCTTATCGTGAATTGCAGCTTGTTC
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