FC932427
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 9.339e-19 Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 3 Query: 36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278 +K+++G LSW T D SLR AF FG++VD+ V+VDRETGRSRGFGFV F+ I+ ++ ++L+GR IRVN AN RP Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.593e-18 Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 3 Query: 39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275 + +VG L W T D+SL+ AF ++G+++DS ++ DRETGRSRGFGFVTF+S I A+N QDLDGR I VN A +R Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 2.717e-18 Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 3 Query: 36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278 +++YVGNLSW D +L+ F E GN+VD+ V+ DR++GRSRGFGFVT+SS I++LN DLDGR IRV+ A RP Sbjct: 207 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEERP 287
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 3.549e-18 Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 3 Query: 36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278 +++YVGNLSW D +L+ F E GN+VD+ V+ DR++GRSRGFGFVT+SS I++LN DLDGR IRV+ A RP Sbjct: 208 NRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEERP 288
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP1_DAUCA (Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.349e-17 Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 3 Query: 39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275 + +VG L+W T+DESL AF +FG+I DS ++ DRETGRSRGFGFVTF I +N Q+LDGR I VN A +R Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSR 85
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 1.761e-17 Identity = 44/79 (55.70%), Postives = 55/79 (69.62%), Query Frame = 3 Query: 39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275 + +VG L+W TS+ESL AF +G I+DS V+ DRETGRSRGFGFVTFSS I +N ++LDGR I VN A +R Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 2.300e-17 Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 3 Query: 36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278 +++YVGNLSW D +L F E G +V++ V+ DR++GRS+GFGFVT SS IN+LN DLDGR+IRV+ A ARP Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARP 337
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.300e-17 Identity = 42/79 (53.16%), Postives = 55/79 (69.62%), Query Frame = 3 Query: 39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275 + +VG L+W T++E+L AF FG ++DS V+ DRETGRSRGFGFVTFSS I +N ++LDGR I VN A +R Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 5.125e-17 Identity = 42/79 (53.16%), Postives = 52/79 (65.82%), Query Frame = 3 Query: 39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275 + +VG L+W T + SL AF +FG +VDS ++ DRETGRSRGFGFVTF I +N QDLDGR I VN A +R Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 6.693e-17 Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 3 Query: 39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275 + +VG L+W T D +L AF ++G+++DS ++ DRETGRSRGFGFVTF I +N QDLDGR I VN A +R Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87 The following BLAST results are available for this feature:
BLAST of FC932427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932427 ID=FC932427; Name=FC932427; organism=Citrus clementina; type=EST; length=563bpback to top |