FC932444

Overview
NameFC932444
Unique NameFC932444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: GLYR1_RAT (Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.094e-57
Identity = 107/211 (50.71%), Postives = 147/211 (69.67%), Query Frame = 2
Query:   74 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVLDLGGIAN 706
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGE+GN AKM L+VNM+ G  M T +EGL L + +G   +TLLD+L+ G +A+
Sbjct:  268 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLAS 478          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: GLYR1_CHICK (Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.094e-57
Identity = 107/211 (50.71%), Postives = 147/211 (69.67%), Query Frame = 2
Query:   74 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVLDLGGIAN 706
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGE+GN AKM L+VNM+ G  M T +EGL L + +G   +TLLD+L+ G +A+
Sbjct:  269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLAS 479          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: GLYR1_BOVIN (Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.094e-57
Identity = 107/211 (50.71%), Postives = 147/211 (69.67%), Query Frame = 2
Query:   74 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVLDLGGIAN 706
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGE+GN AKM L+VNM+ G  M T +EGL L + +G   +TLLD+L+ G +A+
Sbjct:  269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLAS 479          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: GLYR1_HUMAN (Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3)

HSP 1 Score: 221.476 bits (563), Expect = 3.572e-57
Identity = 107/211 (50.71%), Postives = 146/211 (69.19%), Query Frame = 2
Query:   74 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVLDLGGIAN 706
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGE+GN AKM L+VNM+ G  M T +EGL L   +G   +TLLD+L+ G +A+
Sbjct:  269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAHVTGQSQQTLLDILNQGQLAS 479          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: GLYR1_XENTR (Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.024e-56
Identity = 105/211 (49.76%), Postives = 147/211 (69.67%), Query Frame = 2
Query:   74 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVLDLGGIAN 706
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   +ADP AA  +V    GVL+ I PGK Y+DMSTVD ET  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ +Y++  S    +GK +FFLGE+GN A+M L++NM+ G  M T +EG+ L + +G   +TLLD+L+ G +A+
Sbjct:  250 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAHMGRTPAEVVSTCDITFACVADPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDPETVAELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDQGVYEDCSSCFLAMGKTSFFLGEVGNAARMMLILNMVQGSFMATIAEGMTLAQVTGQSQQTLLDILNQGQLAS 460          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: GLYR1_PONAB (Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 6.737e-56
Identity = 105/211 (49.76%), Postives = 146/211 (69.19%), Query Frame = 2
Query:   74 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVLDLGGIAN 706
            ++GFLGLG+MG  I  NLL+ G  VTVW+RT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I P K Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGE+GN AKM L+VNM+ G  M T +EGL L + +G   +TLLD+L+ G +A+
Sbjct:  269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWDRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPRKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLAS 479          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: GLYR1_DANRE (Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.697e-54
Identity = 103/213 (48.36%), Postives = 146/213 (68.54%), Query Frame = 2
Query:   77 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL-GEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVLDLGGIANPY 712
            +GFLGLG+MG  +  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y++MSTVD ET  ++S+ ITS+GG FLEAPVSGS+Q +  G LVI++AG++++Y++  S    +GK +FF+ GE GN A+M L++NM+ G  M T +EGL L + +G   +T LD+L  G +A+ +
Sbjct:  178 IGFLGLGLMGSGVVSNLLKMGHVVTVWNRTAEKCDLFIQEGARLGRTPAEVVSMCDITFSCVSDPKAARDLVLGPSGVLQGIRPGKCYVEMSTVDPETITELSQVITSRGGRFLEAPVSGSQQLSNDGMLVIVAAGDRSVYEDCSSCFQAMGKTSFFIAGEAGNAARMMLILNMVQGSFMATIAEGLTLAQATGQSQQTFLDILCQGQMASTF 390          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: GLYR1_MOUSE (Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.235e-54
Identity = 105/211 (49.76%), Postives = 144/211 (68.25%), Query Frame = 2
Query:   74 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVLDLGGIAN 706
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  K       GA +G +PAEV+  C IT   ++DP AA  +V    GVL+ I PGK Y+DMSTVD +T  ++++ I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGE+GN AKM L+VNM+ G  M T +EGL L + +G   +TLLD+L+ G +A+
Sbjct:  268 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEK------EGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLAS 472          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: GLYR1_AEDAE (Putative oxidoreductase GLYR1 homolog OS=Aedes aegypti GN=AAEL006684 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.273e-46
Identity = 91/212 (42.92%), Postives = 137/212 (64.62%), Query Frame = 2
Query:   71 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVLDLGGIAN 706
            ++ GFLGLGIMG  +  NLL +G  V VWNRT +KC +    GA V  +P++VI+   +T   +ADP  A  +VF   GV+     GKGY++M+ VD ETS  I+  I +KGG +LEA + GSK  AE G L+IL+AGE+ L++E  +    I + +F++G++GN  KM LV+ MI G M+   +EGL L +++GL  + +L+VL+L  +++
Sbjct:  274 LKFGFLGLGIMGCGMVKNLLNSGHSVVVWNRTATKCRKFQEAGAEVADTPSDVIEMTDVTFSCVADPQVAKELVFGNCGVMSANLVGKGYVEMTGVDPETSHDIAEQIIAKGGRYLEAQIQGSKNQAEEGTLIILAAGERLLFEECQTCFEAISRNSFYMGDVGNATKMNLVLQMISGVMLAGIAEGLALADRAGLQQKDVLEVLELTSMSS 485          
BLAST of FC932444 vs. ExPASy Swiss-Prot
Match: GLYR1_ANOGA (Putative oxidoreductase GLYR1 homolog OS=Anopheles gambiae GN=AGAP009949 PE=3 SV=5)

HSP 1 Score: 181.415 bits (459), Expect = 4.096e-45
Identity = 90/233 (38.63%), Postives = 144/233 (61.80%), Query Frame = 2
Query:    8 VDLKSGKNLEHRGGRY*KNKKMEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEIGNGAKMKLVVNMIMGCMMNTFSEGLVLTEKSGLDPRTLLDVLDLGGIAN 706
            +D+ S  N      R  K  +++ GFLGLG+MG  I  NL+++G  V VWNR+  KC +    GA V  +P++V++   +T   ++DP  A  +VF   GV+     GKGY++M+ VD ETS  I+ AI SKGG +LEA + GSK  AE G L+IL++G++ L++E  S    I + +F+LG++GN  KM L++ MI G  +   +E + L +++GL  + +L+VL+L  +++
Sbjct:  262 IDMSSVSNAVQ--SRNIKASQLKFGFLGLGVMGCGIVKNLIKSGHSVVVWNRSAHKCRKFQEVGAEVADTPSDVVEMTDVTYSCVSDPQVAKDMVFGNCGVMSANLAGKGYVEMTGVDPETSNDINEAIISKGGRYLEAQIQGSKNQAEEGTLIILASGDRLLFEECQSCFEAISRNSFYLGDVGNATKMNLILQMISGITLAGVAEAMALADRAGLQQKDVLEVLELTNMSS 492          
The following BLAST results are available for this feature:
BLAST of FC932444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
GLYR1_RAT2.094e-5750.71Putative oxidoreductase GLYR1 OS=Rattus norvegicus... [more]
GLYR1_CHICK2.094e-5750.71Putative oxidoreductase GLYR1 OS=Gallus gallus GN=... [more]
GLYR1_BOVIN2.094e-5750.71Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLY... [more]
GLYR1_HUMAN3.572e-5750.71Putative oxidoreductase GLYR1 OS=Homo sapiens GN=G... [more]
GLYR1_XENTR3.024e-5649.76Putative oxidoreductase GLYR1 OS=Xenopus tropicali... [more]
GLYR1_PONAB6.737e-5649.76Putative oxidoreductase GLYR1 OS=Pongo abelii GN=G... [more]
GLYR1_DANRE3.697e-5448.36Putative oxidoreductase GLYR1 OS=Danio rerio GN=gl... [more]
GLYR1_MOUSE8.235e-5449.76Putative oxidoreductase GLYR1 OS=Mus musculus GN=G... [more]
GLYR1_AEDAE1.273e-4642.92Putative oxidoreductase GLYR1 homolog OS=Aedes aeg... [more]
GLYR1_ANOGA4.096e-4538.63Putative oxidoreductase GLYR1 homolog OS=Anopheles... [more]

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Properties
Property NameValue
Genbank descriptionC34208F08EF PostHarveN Citrus clementina cDNA clone C34208F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932444 ID=FC932444; Name=FC932444; organism=Citrus clementina; type=EST; length=714bp
GAAGTAAGTAGATCTGAAAAGCGGAAAAAATTTAGAACACAGAGGAGGAA
GATATTGAAAAAACAAGAAAATGGAAGTGGGGTTTCTGGGTTTAGGAATT
ATGGGCAAGGCCATTTCTATGAACTTGCTTAGAAATGGATTCAAAGTTAC
TGTATGGAACAGGACTCTCTCTAAGTGTGATGAACTCGTGGCACACGGTG
CTACAGTTGGAGGAAGTCCAGCAGAAGTAATTAAAAAGTGTACGATTACT
ATTGGGATGTTAGCTGATCCTGCGGCTGCACTTTCGGTTGTCTTTGACAA
AGGTGGTGTTTTGGAGCAAATTTGTCCTGGGAAAGGTTACATTGACATGT
CAACAGTTGATCATGAAACTTCAATAAAGATCAGCCGGGCAATTACATCA
AAAGGCGGTCACTTCCTTGAAGCTCCAGTTTCAGGTAGCAAGCAGCCTGC
AGAAACTGGTCAACTAGTAATCCTTTCTGCTGGGGAGAAGGCACTCTATG
ATGAAGCAATTTCAGCTCTCAATGTAATTGGAAAGAAGGCCTTCTTTTTG
GGGGAGATCGGAAACGGAGCAAAAATGAAACTTGTTGTTAACATGATAAT
GGGCTGTATGATGAATACATTTTCTGAAGGACTTGTACTGACTGAAAAGA
GTGGACTTGACCCTCGCACTTTACTTGATGTACTGGACCTGGGTGGTATT
GCTAATCCCTATGT
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