FC932449

Overview
NameFC932449
Unique NameFC932449
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932449 vs. ExPASy Swiss-Prot
Match: RK4_ARATH (50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana GN=RPL4 PE=1 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 1.182e-60
Identity = 118/159 (74.21%), Postives = 132/159 (83.02%), Query Frame = 1
Query:  232 KPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXE-NTIVVEEFDGKFERPKTKEFIEAMRRWG 705
            KPL VSSQLA+ LPILSF GEK+GETYLDLK+A  DTARAVVHRA++TD+ NKRRGTASTLTRGEVRGGG KPYSQKKTG ARRGS RTPLRPGGGVVFGP+P+DWSIKIN+KEK+L            E   IVVEEF  KFE+PKTK+F+ AM+RWG
Sbjct:   43 KPLSVSSQLAT-LPILSFEGEKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTGHARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFGEKFEKPKTKDFLAAMQRWG 200          
BLAST of FC932449 vs. ExPASy Swiss-Prot
Match: RK4_TOBAC (50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.035e-56
Identity = 120/183 (65.57%), Postives = 138/183 (75.41%), Query Frame = 1
Query:  190 IQLAKPN-----SLINLPPKPLIVS------SQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWG 705
            I L+ PN      L+   PK L V+      S++A+ +PILSF G ++G T L+LKSA  DTARAVVHR L TD++N+RRGTASTLTR EVRGGG KPY QKKTGRARRGSNRTPLRPGGGVVFGPKP+DWS+KINKKEKRL            ENTIVVEEF+ KFE+PKTKEFI+ MRRWG
Sbjct:   12 IFLSNPNIQSSKHLLFRSPKQLSVAAIATIRSEVAT-IPILSFDGAEVGSTTLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGSNRTPLRPGGGVVFGPKPKDWSVKINKKEKRL--AISTALSSASENTIVVEEFNDKFEKPKTKEFIDLMRRWG 191          
BLAST of FC932449 vs. ExPASy Swiss-Prot
Match: RK4_SPIOL (50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea GN=RPL4 PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.710e-56
Identity = 113/174 (64.94%), Postives = 134/174 (77.01%), Query Frame = 1
Query:  184 KPIQLAKPNSLINLPPKPLIVSSQLASPLPILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWG 705
            KPI L  P+S  +     L + S+L  PLPIL+F+GEK+GET+L+LK+A P+ ARAVVHR LIT +QNKRRGTASTLTR EVRGGGRKPY QKKTGRARRGS  +PLRPGGGV+FGPKPRDW+IK+NKKE+RL             N+ VVEEF   FE+PKTK+FI AM+RWG
Sbjct:   29 KPI-LKLPSSSHSQTSLSLSIKSELI-PLPILNFSGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKKTGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVG--NSFVVEEFAENFEKPKTKDFIAAMQRWG 198          
BLAST of FC932449 vs. ExPASy Swiss-Prot
Match: RL4_CYAP4 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplD PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.836e-37
Identity = 81/144 (56.25%), Postives = 99/144 (68.75%), Query Frame = 1
Query:  274 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWG 705
            I  + G ++GET L+L+ A  + A  +VHRAL   M N R+GTAST TR EVRGGGRKP+ QK TGRAR GSNR+PL  GGGV+FGPKPRD+SIK+N KE+RL            ++ IVVE+F  K  RPKTKE   A+ RWG
Sbjct:    6 IKDWQGSEVGETALELRVAKAENAAHIVHRALRRQMANARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSIKMNYKERRL--ALRTALISRSDSLIVVEDFSDKLPRPKTKELAAAIARWG 147          
BLAST of FC932449 vs. ExPASy Swiss-Prot
Match: RL4_NOSP7 (50S ribosomal protein L4 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplD PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.111e-37
Identity = 75/144 (52.08%), Postives = 101/144 (70.14%), Query Frame = 1
Query:  274 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWG 705
            + ++ GE++GET  +L+ A  +TA  +VHRAL+  + N R+G AST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+ +K+N+KE+RL            ++ IVVEEF  +  RPKTK+ + A+ RWG
Sbjct:    6 VKNWQGEQVGETTFELRVAKEETASHIVHRALVRQLTNARQGNASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFDLKLNRKERRL--ALRTAFVGRIDDLIVVEEFSTELSRPKTKDLVAALARWG 147          
BLAST of FC932449 vs. ExPASy Swiss-Prot
Match: RL4_THEEB (50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplD PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.462e-36
Identity = 77/144 (53.47%), Postives = 98/144 (68.06%), Query Frame = 1
Query:  274 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWG 705
            +  + G   GE  LDL +A P+TA  +VHRAL+  + N R+GT ST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+S K+N+KE+RL            E+ IVV++F     RPKTKE + A++RWG
Sbjct:    6 VKDWQGADSGEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTALMSRVEDLIVVQDFADHLPRPKTKELVTALQRWG 147          
BLAST of FC932449 vs. ExPASy Swiss-Prot
Match: RL4_CYAP7 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 7424) GN=rplD PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.522e-36
Identity = 75/144 (52.08%), Postives = 101/144 (70.14%), Query Frame = 1
Query:  274 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWG 705
            + ++ G+++G+T L+LK A  +TA  ++HRA++  + N R+G AST TR EVRGGGRKP+ QK TGRAR GSNR+PL  GGGV+FGPKPRD+S K+N+KE+RL            EN I+VE F  +  +PKTKE   A+ RWG
Sbjct:    6 VKNWQGDEVGQTSLELKVAKEETASHILHRAVVRHLANARQGNASTKTRAEVRGGGRKPWRQKGTGRARAGSNRSPLWRGGGVIFGPKPRDYSQKMNRKERRL--ALRTALNSKAENLIIVENFAPELPQPKTKELALALTRWG 147          
BLAST of FC932449 vs. ExPASy Swiss-Prot
Match: RL4_ACAM1 (50S ribosomal protein L4 OS=Acaryochloris marina (strain MBIC 11017) GN=rplD PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.522e-36
Identity = 77/144 (53.47%), Postives = 98/144 (68.06%), Query Frame = 1
Query:  274 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWG 705
            + ++ GE  G+  LDLK A  + A  +VHRAL   M N R+GTAS+ TR EVRGGGRKP+ QK TGRAR GS+R+PL  GGGV+FGPKPR +S K+N+KE+RL            E+ +VVE+F     RPKTK+ +EAM RWG
Sbjct:    6 VRNWQGEDAGQAELDLKVANEENAAHIVHRALRRQMNNARQGTASSKTRSEVRGGGRKPWRQKGTGRARAGSSRSPLWRGGGVIFGPKPRSYSTKMNRKERRL--ALRTAFASRAEDLVVVEDFGDNLSRPKTKDLLEAMGRWG 147          
BLAST of FC932449 vs. ExPASy Swiss-Prot
Match: RL4_TRIEI (50S ribosomal protein L4 OS=Trichodesmium erythraeum (strain IMS101) GN=rplD PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.906e-36
Identity = 75/144 (52.08%), Postives = 102/144 (70.83%), Query Frame = 1
Query:  274 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWG 705
            + ++ GE++G+  L+L+ A  ++A  +VHR+L   M N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV+FGPKPRD+S K+N+KEKRL            E+ IV+E+   +F +PKTKE ++A+ RWG
Sbjct:    6 VKNWQGEEVGQATLNLRVAKEESAAHIVHRSLRLQMANNRQGTASTKTRSEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSHKMNRKEKRL--ALSTAFQSRSEDLIVIEDLSEQFTKPKTKELVQAITRWG 147          
BLAST of FC932449 vs. ExPASy Swiss-Prot
Match: RL4_CYAP8 (50S ribosomal protein L4 OS=Cyanothece sp. (strain PCC 8801) GN=rplD PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.244e-35
Identity = 75/144 (52.08%), Postives = 99/144 (68.75%), Query Frame = 1
Query:  274 ILSFTGEKIGETYLDLKSAAPDTARAVVHRALITDMQNKRRGTASTLTRGEVRGGGRKPYSQKKTGRARRGSNRTPLRPGGGVVFGPKPRDWSIKINKKEKRLXXXXXXXXXXXXENTIVVEEFDGKFERPKTKEFIEAMRRWG 705
            I ++ GE++G+  L+LK A  + A  +VHRAL+    N R+GTAST TR EVRGGGRKP+ QK TGRAR GS R+PL  GGGV FGPKP+D+++K+N+KE+RL            E+ IVVE F  +  +PKTKE + A+ RWG
Sbjct:    6 IKNWQGEEVGQATLELKVAKEENAAHIVHRALVRQQTNARQGTASTKTRAEVRGGGRKPWRQKGTGRARAGSIRSPLWRGGGVTFGPKPKDFNVKMNRKERRL--ALRTALDSRIEDLIVVENFAEQLTQPKTKELVSALTRWG 147          
The following BLAST results are available for this feature:
BLAST of FC932449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK4_ARATH1.182e-6074.2150S ribosomal protein L4, chloroplastic OS=Arabido... [more]
RK4_TOBAC1.035e-5665.5750S ribosomal protein L4, chloroplastic OS=Nicotia... [more]
RK4_SPIOL6.710e-5664.9450S ribosomal protein L4, chloroplastic OS=Spinaci... [more]
RL4_CYAP41.836e-3756.2550S ribosomal protein L4 OS=Cyanothece sp. (strain... [more]
RL4_NOSP79.111e-3752.0850S ribosomal protein L4 OS=Nostoc punctiforme (st... [more]
RL4_THEEB3.462e-3653.4750S ribosomal protein L4 OS=Thermosynechococcus el... [more]
RL4_CYAP74.522e-3652.0850S ribosomal protein L4 OS=Cyanothece sp. (strain... [more]
RL4_ACAM14.522e-3653.4750S ribosomal protein L4 OS=Acaryochloris marina (... [more]
RL4_TRIEI5.906e-3652.0850S ribosomal protein L4 OS=Trichodesmium erythrae... [more]
RL4_CYAP82.244e-3552.0850S ribosomal protein L4 OS=Cyanothece sp. (strain... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34208G01EF PostHarveN Citrus clementina cDNA clone C34208G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932449 ID=FC932449; Name=FC932449; organism=Citrus clementina; type=EST; length=705bp
GAACTCTTCGTGCGAACGACGGCGTTTAAGGGGACTGAGCAACCCTCATC
CGGATAACGATACTGGTAGGTAGTAGCAAAGCTCACTCACCAAAAATTTC
TCTTAACAATGGCAGCCTCGTCTTCATCTCTTTCATTTTTCTCCTCCACA
ATATTCCTCACTTCATCTTCTAACAAAGTTCCAAAGCCCATTCAACTCGC
CAAGCCAAATTCCCTAATAAATCTCCCGCCAAAGCCACTCATTGTCTCAT
CTCAACTCGCCTCTCCGCTCCCGATACTGTCCTTCACAGGCGAAAAAATC
GGCGAGACATACCTCGACCTAAAGTCGGCCGCACCCGACACAGCGCGTGC
GGTTGTCCACCGGGCGTTGATCACCGACATGCAGAACAAGCGACGCGGCA
CCGCGTCGACTCTCACGCGCGGGGAGGTAAGAGGTGGGGGACGGAAACCC
TACTCTCAAAAGAAAACGGGTAGGGCTCGTCGCGGATCGAACAGGACCCC
ACTTCGGCCCGGAGGAGGCGTCGTTTTTGGACCCAAGCCGAGGGACTGGT
CGATTAAGATAAACAAGAAGGAGAAGCGGCTGGCGATTTCGACGGCGATA
GCGAGCGCCGCGGCGGCGGAGAACACGATTGTGGTGGAGGAATTTGATGG
GAAGTTTGAGAGGCCGAAGACGAAGGAGTTTATTGAGGCGATGAGGAGGT
GGGGT
back to top