FC932454

Overview
NameFC932454
Unique NameFC932454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932454 vs. ExPASy Swiss-Prot
Match: RL18B_SCHPO (60S ribosomal protein L18-B OS=Schizosaccharomyces pombe GN=rpl18b PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.658e-49
Identity = 101/168 (60.12%), Postives = 117/168 (69.64%), Query Frame = 1
Query:   43 MGIDLDRHHVRSSHRKAPKSDNVYLKVLVKLYRFLARRTESNFNKAVLRRLFMSRINRPPVSLSRAVANISEAQXXXXXXXXXXXX---DDNRLLTVPKLSIXXXXXXXXXXXXIEKAGGETLTLDQLALRAPTGANTLLLRGPKNAREAVKHFGFGPHTDKKPYVAS 537
            MGID++RHHVR S R  P S+NVYLK+LVKLYRFLARRT+S FNKA+L+RLF S+ NRPP+S+S+  A  S                  DD RLLTVPKLS+            I KAGGE LTLDQLALRAPTG+NT+LLRG K+AREA +HFGFGPH  K PYV S
Sbjct:    1 MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASLEGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKKHAREAYRHFGFGPHKHKAPYVRS 168          
BLAST of FC932454 vs. ExPASy Swiss-Prot
Match: RL18A_SCHPO (60S ribosomal protein L18-A OS=Schizosaccharomyces pombe GN=rpl18a PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.770e-48
Identity = 99/168 (58.93%), Postives = 118/168 (70.24%), Query Frame = 1
Query:   43 MGIDLDRHHVRSSHRKAPKSDNVYLKVLVKLYRFLARRTESNFNKAVLRRLFMSRINRPPVSLSRAVANISE---AQXXXXXXXXXXXXDDNRLLTVPKLSIXXXXXXXXXXXXIEKAGGETLTLDQLALRAPTGANTLLLRGPKNAREAVKHFGFGPHTDKKPYVAS 537
            MGID++RHHV+ S R  P S+NVYLK+LVKLYRFLARRT+S FNKA+L+RLF S+ NRPP+S+S+  A  S    +             DD R+LTVPKLSI            I KAGGE LTLDQLALRAPTG+NT+L+RG K+AREA +HFGFGPH  K PYV S
Sbjct:    1 MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPPISISKIAALTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKKHAREAYRHFGFGPHKHKAPYVRS 168          
BLAST of FC932454 vs. ExPASy Swiss-Prot
Match: RL18_YEAST (60S ribosomal protein L18 OS=Saccharomyces cerevisiae GN=RPL18A PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.202e-42
Identity = 92/167 (55.09%), Postives = 110/167 (65.87%), Query Frame = 1
Query:   43 MGID-LDRHHVRSSHRKAPKSDNVYLKVLVKLYRFLARRTESNFNKAVLRRLFMSRINRPPVSLSR-AVANISEAQXXXXXXXXXXXXDDNRLLTVPKLSIXXXXXXXXXXXXIEKAGGETLTLDQLALRAPTGANTLLLRGPKNAREAVKHFGFGPHTDKKPYVAS 537
            MGID   + H RS HR APKSDNVYLK+LVKLY FLARRT++ FNK VL+ LF+S+INRPPVS+SR A A   E              DD R+   PK ++            I KAGGE +TLDQLA+RAP G NTL+LRGP+N+REAV+HFG GPH  K P + S
Sbjct:    1 MGIDHTSKQHKRSGHRTAPKSDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLSKINRPPVSVSRIARALKQEGAANKTVVVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAPKGQNTLILRGPRNSREAVRHFGMGPHKGKAPRILS 167          
BLAST of FC932454 vs. ExPASy Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.090e-37
Identity = 84/169 (49.70%), Postives = 110/169 (65.09%), Query Frame = 1
Query:   43 MGIDLDRHHVRSSHRKAPKSDNVYLKVLVKLYRFLARRTESNFNKAVLRRLFMSRINRPPVSLSRAVANISE-AQXXXXXXXXXXXXDDNRLLTVPKLSIXXXXXXXXXXXXIEKAGGETLTLDQLALRAPTGANTLLLRGPKNAREAVKHFGFG---PHTDKKPYVAS 537
            MGID++  + R   R  PKS +VYL++LVKLYR+LARRT + FNK +L+RLFMS+I RPP+SLS+ V  + +  +            DD+R+  +PKLSI            I KAGGE +T DQLALR+PTG+ T+LL+G +NAREAVKHFG     PH+  KP V S
Sbjct:    1 MGIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRPPISLSKVVRFMKKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRS 169          
BLAST of FC932454 vs. ExPASy Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.090e-37
Identity = 87/167 (52.10%), Postives = 107/167 (64.07%), Query Frame = 1
Query:   43 MGIDLDRH-HVRSSHRKAPKSDNVYLKVLVKLYRFLARRTESNFNKAVLRRLFMSRINRPPVSLSRAVANISEAQXXXXXXXXXXXXDDNRLLTVPKLSIXXXXXXXXXXXXIEKAGGETLTLDQLALRAPTGANTLLLRGPKNAREAVKHFGFG---PHTDKKPYV 531
            MGIDL      + + R APKSD+VYLK+LVKLYRFL RR+ SNFN  +L+RLFMS++N+ P+SLSR V      +            DD R+  +P + +            IEKAGGE LT DQLALRAP G NT+LLRGPKN+REAVKHFG     PH++ KPYV
Sbjct:    1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLV-EFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYV 166          
BLAST of FC932454 vs. ExPASy Swiss-Prot
Match: RL18_DROME (60S ribosomal protein L18 OS=Drosophila melanogaster GN=RpL18 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.341e-37
Identity = 86/169 (50.89%), Postives = 104/169 (61.54%), Query Frame = 1
Query:   43 MGIDLDRHHVRSSHRKAPKSDNVYLKVLVKLYRFLARRTESNFNKAVLRRLFMSRINRPPVSLSRAVANISEA-QXXXXXXXXXXXXDDNRLLTVPKLSIXXXXXXXXXXXXIEKAGGETLTLDQLALRAPTGANTLLLRGPKNAREAVKHFGFG---PHTDKKPYVAS 537
            MGID++  + R   R  PKS +VYL++LVKLYRFL RRT   FN+ +L+RLFMS+INRPP+SL R       A Q            DD RLL VPKL++            I KAGGE LT DQLALR+PTG NTLLL+G + AR A KHFG     PH+  +PYV S
Sbjct:    1 MGIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPPLSLQRIARFFKAANQPESTIVVVGTVTDDARLLVVPKLTVCALHVTQTARERILKAGGEVLTFDQLALRSPTGKNTLLLQGRRTARTACKHFGKAPGVPHSHTRPYVRS 169          
BLAST of FC932454 vs. ExPASy Swiss-Prot
Match: RL18_SPOFR (60S ribosomal protein L18 OS=Spodoptera frugiperda GN=RpL18 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.554e-36
Identity = 86/167 (51.50%), Postives = 106/167 (63.47%), Query Frame = 1
Query:   43 MGIDLDRHHVRSSHRKAPKSDNVYLKVLVKLYRFLARRTESNFNKAVLRRLFMSRINRPPVSLSRAVANISE-AQXXXXXXXXXXXXDDNRLLTVPKLSIXXXXXXXXXXXXIEKAGGETLTLDQLALRAPTGANTLLLRGPKNAREAVKHFG---FGPHTDKKPYV 531
            MGID++  H R   R   KS +VYL++LVKLYR+LARRT S FN  +LRRLFMSRINRPP+SLSR   ++ +  +            +D RL  VPK+S+            I  AGGE LT DQLALRAPTGA T+LL+G +NAREAV+HFG     P +  KPYV
Sbjct:    1 MGIDINHKHDRKVRRTEVKSQDVYLRLLVKLYRYLARRTNSKFNTIILRRLFMSRINRPPLSLSRLARHMKKPTREGMIAVVVGTITNDVRLYKVPKMSVAALHVTEKARARILAAGGEILTFDQLALRAPTGAKTVLLQGRRNAREAVRHFGPAPGAPRSHTKPYV 167          
BLAST of FC932454 vs. ExPASy Swiss-Prot
Match: RL18_PLUXY (60S ribosomal protein L18 OS=Plutella xylostella GN=RpL18 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.462e-36
Identity = 84/169 (49.70%), Postives = 107/169 (63.31%), Query Frame = 1
Query:   43 MGIDLDRHHVRSSHRKAPKSDNVYLKVLVKLYRFLARRTESNFNKAVLRRLFMSRINRPPVSLSRAVANISE-AQXXXXXXXXXXXXDDNRLLTVPKLSIXXXXXXXXXXXXIEKAGGETLTLDQLALRAPTGANTLLLRGPKNAREAVKHFG---FGPHTDKKPYVAS 537
            MGID++  H R   R   KS +VYL++LVKLYR+LARRT + FN+ VLRRLFMSRINRPP+SLSR   ++ +  +            +D RL  VPK+++            I  AGGE LT DQLALRAPTG  T+L++G +NAREAV+HFG     P +  KPYV S
Sbjct:    1 MGIDINHKHDRKVRRTEVKSQDVYLRLLVKLYRYLARRTNAKFNQIVLRRLFMSRINRPPLSLSRLARHMKKPTREGLIAVVVGTITNDTRLYKVPKMTVAALHVTEKARARILDAGGEILTFDQLALRAPTGRKTVLIQGQRNAREAVRHFGPAPGAPRSHTKPYVRS 169          
BLAST of FC932454 vs. ExPASy Swiss-Prot
Match: RL18_DROPS (60S ribosomal protein L18 OS=Drosophila pseudoobscura pseudoobscura GN=RpL18 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.522e-36
Identity = 84/168 (50.00%), Postives = 103/168 (61.31%), Query Frame = 1
Query:   46 GIDLDRHHVRSSHRKAPKSDNVYLKVLVKLYRFLARRTESNFNKAVLRRLFMSRINRPPVSLSRAVANISEA-QXXXXXXXXXXXXDDNRLLTVPKLSIXXXXXXXXXXXXIEKAGGETLTLDQLALRAPTGANTLLLRGPKNAREAVKHFGFG---PHTDKKPYVAS 537
            GID++  + R   R  PKS +VYL++LVKLYRFL RRT   FN+ +L+RLFMS+INRPP+SL R       A Q            DD RLL VPKL++            I KAGGE LT DQLAL++PTG NTLLL+G + AR A KHFG     PH+  +PYV S
Sbjct:    3 GIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPPLSLQRIARFFKAANQPESTVVVVGTVTDDARLLVVPKLTLCALHVTQTARERILKAGGEVLTFDQLALKSPTGKNTLLLQGKRTARTACKHFGKAPGVPHSHTRPYVRS 170          
BLAST of FC932454 vs. ExPASy Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.522e-36
Identity = 86/167 (51.50%), Postives = 106/167 (63.47%), Query Frame = 1
Query:   43 MGIDLDRH-HVRSSHRKAPKSDNVYLKVLVKLYRFLARRTESNFNKAVLRRLFMSRINRPPVSLSRAVANISEAQXXXXXXXXXXXXDDNRLLTVPKLSIXXXXXXXXXXXXIEKAGGETLTLDQLALRAPTGANTLLLRGPKNAREAVKHFGFG---PHTDKKPYV 531
            MGIDL      + + R APKSD+VYLK+ VKLYRFL RRT S FN  +L+RLFMS++N+ P+SLSR V  ++  +            DD R+  +P + +            IEKAGGE LT DQLALRAP G NT+LLRGPKN+REAVKHFG     PH+  KPYV
Sbjct:    1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFMT-GKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYV 166          
The following BLAST results are available for this feature:
BLAST of FC932454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL18B_SCHPO4.658e-4960.1260S ribosomal protein L18-B OS=Schizosaccharomyces... [more]
RL18A_SCHPO1.770e-4858.9360S ribosomal protein L18-A OS=Schizosaccharomyces... [more]
RL18_YEAST7.202e-4255.0960S ribosomal protein L18 OS=Saccharomyces cerevis... [more]
RL18_TIMBA4.090e-3749.7060S ribosomal protein L18 OS=Timarcha balearica GN... [more]
RL183_ARATH4.090e-3752.1060S ribosomal protein L18-3 OS=Arabidopsis thalian... [more]
RL18_DROME5.341e-3750.8960S ribosomal protein L18 OS=Drosophila melanogast... [more]
RL18_SPOFR1.554e-3651.5060S ribosomal protein L18 OS=Spodoptera frugiperda... [more]
RL18_PLUXY3.462e-3649.7060S ribosomal protein L18 OS=Plutella xylostella G... [more]
RL18_DROPS4.522e-3650.0060S ribosomal protein L18 OS=Drosophila pseudoobsc... [more]
RL182_ARATH4.522e-3651.5060S ribosomal protein L18-2 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionC34208G06EF PostHarveN Citrus clementina cDNA clone C34208G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932454 ID=FC932454; Name=FC932454; organism=Citrus clementina; type=EST; length=706bp
GGACAGCAAGCTATTTCCCGGGAAGTCGACCAATACACAGCCATGGGTAT
CGACCTGGACCGCCACCATGTGCGGAGCAGCCACCGCAAGGCTCCCAAGA
GCGACAACGTCTACTTGAAGGTTCTGGTGAAGCTTTACCGCTTCTTAGCT
CGCCGCACCGAGTCCAACTTCAACAAGGCCGTCCTCCGTCGTCTCTTCAT
GTCGAGAATCAACCGCCCCCCGGTTTCCCTTTCTCGCGCTGTCGCCAACA
TCAGTGAGGCGCAGAAGGGCAAGACCGTCGTCGTTGTCGGTACCGTCACC
GATGACAACCGCCTTTTGACCGTCCCCAAGCTGTCGATTGCTGCCCTCCG
TTTCACCGCGACTGCTCGCGCTCGCATTGAGAAGGCTGGTGGTGAGACTT
TGACTCTTGACCAGCTTGCTCTCCGCGCTCCTACCGGTGCCAACACTCTC
CTCCTGCGTGGACCCAAGAACGCCCGTGAGGCCGTGAAGCACTTTGGCTT
TGGTCCCCACACTGACAAGAAGCCGTACGTGGCTAGCAAGGGCCGCAAGT
TCGAGCGGGCTCGTGGTCGCAGAAGATCCAAGGGTTTCAAGGTTTAAGGG
ACTTGATGAGGATGATGTGGTGTGTCTGTATTGTGAAAGATGCATTGGCC
ACATTGACTTTCTCGGTGCCTGGAATCGTTCCAGTTCTAGCCAGAGACCT
CAAGTC
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