FC932483
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 3.121e-46 Identity = 90/104 (86.54%), Postives = 97/104 (93.27%), Query Frame = 1 Query: 127 DDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSAKVDISGVNVDKFDDKYFAKEVGRKKKK 438 DDVKKPL+NKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFK+NGVPLRRVNQ+YVI TS KVDISGVNV+KFDDKYF K+ +K KK Sbjct: 69 DDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKK 172
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 1.186e-45 Identity = 89/104 (85.58%), Postives = 97/104 (93.27%), Query Frame = 1 Query: 127 DDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSAKVDISGVNVDKFDDKYFAKEVGRKKKK 438 +DVKKPLVN+RKPKPTKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTS K+DISGVN +KFDDKYF K +KKKK Sbjct: 68 EDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKK 171
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 1.110e-43 Identity = 88/104 (84.62%), Postives = 94/104 (90.38%), Query Frame = 1 Query: 127 DDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSAKVDISGVNVDKFDDKYFAKEVGRKKKK 438 +DVKKPL N+R KPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTS KVDISGV +DKFDDKYF K +KKKK Sbjct: 68 EDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKK 171
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 4.219e-43 Identity = 87/104 (83.65%), Postives = 93/104 (89.42%), Query Frame = 1 Query: 127 DDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSAKVDISGVNVDKFDDKYFAKEVGRKKKK 438 +DVKKPL N+R KP KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTS KVDISGV +DKFDDKYF K +KKKK Sbjct: 68 EDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKK 171
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4) HSP 1 Score: 132.88 bits (333), Expect = 6.319e-31 Identity = 65/105 (61.90%), Postives = 81/105 (77.14%), Query Frame = 1 Query: 127 DDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSAKVDISGVNVDKFDDKYFAKEVGRKKKKE 441 +DV P ++ +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L LLV+GPFK+NGVPLRRVN YVI TS KV + GVNV+KF+ +YFAKE KK+K+ Sbjct: 13 EDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKK 117
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 4.096e-30 Identity = 64/105 (60.95%), Postives = 80/105 (76.19%), Query Frame = 1 Query: 127 DDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSAKVDISGVNVDKFDDKYFAKEVGRKKKKE 441 +DV ++ +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L LL+SGPFK+NGVPLRRVN YVI TS KV + GVNV+KF+ +YFAKE KK+K+ Sbjct: 13 EDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKK 117
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL6_DICDI (60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 2.326e-25 Identity = 60/97 (61.86%), Postives = 71/97 (73.20%), Query Frame = 1 Query: 154 KRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSAKVDISGVNV-DKFDDKYFAKEVGRKKKKE 441 K+ + LR SITPGTVLIILAGRF GKRVV LKQL SGL+L++GPFK+NGVPLRR++Q YVI TS K+D+S V V +D YFA E K E Sbjct: 79 KKVQQKVALRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAEKKSTTKSE 175
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 6.766e-25 Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 1 Query: 142 PLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSA-KVDISGVNVDKFDDKYFAKE--VGRKKKKE 441 P ++ +PTKLRAS+ PGTV I+LAGRF+GKRVV L QL L+V+GP+K+NGVP+RRVN YVI TSA K+D+SGV+V+KF YFAK+ G KK E Sbjct: 36 PKKARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQKRSGPVKKDE 137
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3) HSP 1 Score: 111.694 bits (278), Expect = 1.507e-24 Identity = 62/111 (55.86%), Postives = 79/111 (71.17%), Query Frame = 1 Query: 127 DDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSAKVDISGVNV-DKFDDKYFAKEVGRKKKKE 441 +DV + L++ K KP KLRASITPGT+LIIL GR +GKRV+FLKQL SGLLLV+GP +N VPLRR +Q +VI TS K+DISGV + + D YF K+ RK + + Sbjct: 115 EDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQ 224
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3) HSP 1 Score: 111.694 bits (278), Expect = 1.507e-24 Identity = 63/111 (56.76%), Postives = 79/111 (71.17%), Query Frame = 1 Query: 127 DDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSAKVDISGVNV-DKFDDKYFAKEVGRKKKKE 441 +DV + L++ K KP KLRASITPGT+LIIL GR +GKRVVFLKQL SGLLLV+GP +N VPLRR +Q +VI TS K+DISGV + + D YF K+ RK + + Sbjct: 118 EDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQ 227 The following BLAST results are available for this feature:
BLAST of FC932483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932483 ID=FC932483; Name=FC932483; organism=Citrus clementina; type=EST; length=455bpback to top |