FC932483

Overview
NameFC932483
Unique NameFC932483
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length455
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL6_MESCR (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 3.121e-46
Identity = 90/104 (86.54%), Postives = 97/104 (93.27%), Query Frame = 1
Query:  127 DDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSAKVDISGVNVDKFDDKYFAKEVGRKKKK 438
            DDVKKPL+NKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFK+NGVPLRRVNQ+YVI TS KVDISGVNV+KFDDKYF K+  +K KK
Sbjct:   69 DDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKK 172          
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL61_ARATH (60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.186e-45
Identity = 89/104 (85.58%), Postives = 97/104 (93.27%), Query Frame = 1
Query:  127 DDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSAKVDISGVNVDKFDDKYFAKEVGRKKKK 438
            +DVKKPLVN+RKPKPTKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTS K+DISGVN +KFDDKYF K   +KKKK
Sbjct:   68 EDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKK 171          
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL63_ARATH (60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.110e-43
Identity = 88/104 (84.62%), Postives = 94/104 (90.38%), Query Frame = 1
Query:  127 DDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSAKVDISGVNVDKFDDKYFAKEVGRKKKK 438
            +DVKKPL N+R  KPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTS KVDISGV +DKFDDKYF K   +KKKK
Sbjct:   68 EDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKK 171          
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL62_ARATH (60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 4.219e-43
Identity = 87/104 (83.65%), Postives = 93/104 (89.42%), Query Frame = 1
Query:  127 DDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSAKVDISGVNVDKFDDKYFAKEVGRKKKK 438
            +DVKKPL N+R  KP KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKINGVPLRRVNQ+YVIGTS KVDISGV +DKFDDKYF K   +KKKK
Sbjct:   68 EDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKK 171          
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL6B_YEAST (60S ribosomal protein L6-B OS=Saccharomyces cerevisiae GN=RPL6B PE=1 SV=4)

HSP 1 Score: 132.88 bits (333), Expect = 6.319e-31
Identity = 65/105 (61.90%), Postives = 81/105 (77.14%), Query Frame = 1
Query:  127 DDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSAKVDISGVNVDKFDDKYFAKEVGRKKKKE 441
            +DV  P   ++  +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L    LLV+GPFK+NGVPLRRVN  YVI TS KV + GVNV+KF+ +YFAKE   KK+K+
Sbjct:   13 EDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKK 117          
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL6A_YEAST (60S ribosomal protein L6-A OS=Saccharomyces cerevisiae GN=RPL6A PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 4.096e-30
Identity = 64/105 (60.95%), Postives = 80/105 (76.19%), Query Frame = 1
Query:  127 DDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSAKVDISGVNVDKFDDKYFAKEVGRKKKKE 441
            +DV      ++  +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L    LL+SGPFK+NGVPLRRVN  YVI TS KV + GVNV+KF+ +YFAKE   KK+K+
Sbjct:   13 EDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKK 117          
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL6_DICDI (60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.326e-25
Identity = 60/97 (61.86%), Postives = 71/97 (73.20%), Query Frame = 1
Query:  154 KRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSAKVDISGVNV-DKFDDKYFAKEVGRKKKKE 441
            K+  +   LR SITPGTVLIILAGRF GKRVV LKQL SGL+L++GPFK+NGVPLRR++Q YVI TS K+D+S V V    +D YFA E     K E
Sbjct:   79 KKVQQKVALRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAEKKSTTKSE 175          
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL6_SCHPO (60S ribosomal protein L6 OS=Schizosaccharomyces pombe GN=rpl6 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 6.766e-25
Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 1
Query:  142 PLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSA-KVDISGVNVDKFDDKYFAKE--VGRKKKKE 441
            P   ++  +PTKLRAS+ PGTV I+LAGRF+GKRVV L QL    L+V+GP+K+NGVP+RRVN  YVI TSA K+D+SGV+V+KF   YFAK+   G  KK E
Sbjct:   36 PKKARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQKRSGPVKKDE 137          
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL6_PIG (60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.507e-24
Identity = 62/111 (55.86%), Postives = 79/111 (71.17%), Query Frame = 1
Query:  127 DDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSAKVDISGVNV-DKFDDKYFAKEVGRKKKKE 441
            +DV + L++  K KP      KLRASITPGT+LIIL GR +GKRV+FLKQL SGLLLV+GP  +N VPLRR +Q +VI TS K+DISGV + +   D YF K+  RK + +
Sbjct:  115 EDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQ 224          
BLAST of FC932483 vs. ExPASy Swiss-Prot
Match: RL6_BOVIN (60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.507e-24
Identity = 63/111 (56.76%), Postives = 79/111 (71.17%), Query Frame = 1
Query:  127 DDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSAKVDISGVNV-DKFDDKYFAKEVGRKKKKE 441
            +DV + L++  K KP      KLRASITPGT+LIIL GR +GKRVVFLKQL SGLLLV+GP  +N VPLRR +Q +VI TS K+DISGV + +   D YF K+  RK + +
Sbjct:  118 EDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQ 227          
The following BLAST results are available for this feature:
BLAST of FC932483 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RL6_MESCR3.121e-4686.5460S ribosomal protein L6 OS=Mesembryanthemum cryst... [more]
RL61_ARATH1.186e-4585.5860S ribosomal protein L6-1 OS=Arabidopsis thaliana... [more]
RL63_ARATH1.110e-4384.6260S ribosomal protein L6-3 OS=Arabidopsis thaliana... [more]
RL62_ARATH4.219e-4383.6560S ribosomal protein L6-2 OS=Arabidopsis thaliana... [more]
RL6B_YEAST6.319e-3161.9060S ribosomal protein L6-B OS=Saccharomyces cerevi... [more]
RL6A_YEAST4.096e-3060.9560S ribosomal protein L6-A OS=Saccharomyces cerevi... [more]
RL6_DICDI2.326e-2561.8660S ribosomal protein L6 OS=Dictyostelium discoide... [more]
RL6_SCHPO6.766e-2559.2260S ribosomal protein L6 OS=Schizosaccharomyces po... [more]
RL6_PIG1.507e-2455.8660S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=... [more]
RL6_BOVIN1.507e-2456.7660S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC34209B01EF PostHarveN Citrus clementina cDNA clone C34209B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932483 ID=FC932483; Name=FC932483; organism=Citrus clementina; type=EST; length=455bp
ATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCT
GTCTACTATCCAGCGAAACCACAGCGAAACCAAAGCCGCTGCTCCCGCCG
AGAAGCCCCCCAAGTTTTACCCCGCCGATGACGTCAAGAAACCACTCGTC
AACAAGCGCAAGCCTAAACCCACCAAACTTAGAGCAAGCATCACCCCAGG
GACAGTGCTGATTATACTAGCTGGAAGGTTCAAGGGTAAGAGAGTTGTGT
TCCTGAAGCAGCTTCCATCTGGGTTGCTTCTAGTTTCTGGGCCATTTAAG
ATCAATGGTGTTCCTTTACGACGTGTGAACCAGTCTTACGTGATTGGAAC
TTCTGCCAAAGTTGATATCTCCGGAGTGAATGTGGATAAGTTTGATGATA
AGTATTTTGCCAAGGAAGTCGGGAGGAAGAAGAAGAAGGAGAGAATGAGT
TCTTT
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