FC932494

Overview
NameFC932494
Unique NameFC932494
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932494 vs. ExPASy Swiss-Prot
Match: AB5F_ARATH (ABC transporter F family member 5 OS=Arabidopsis thaliana GN=ABCF5 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 3.684e-81
Identity = 156/208 (75.00%), Postives = 168/208 (80.77%), Query Frame = 3
Query:    6 KQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXVPTNHLDL 629
            K S  GAS ISSGVKLENI KSYKGVTVLKDVTWE              AGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+AFKEEMEI  KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELGF  +D DRLVASFS GWQMRMSLGKI            PTNHLDL
Sbjct:   85 KSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVGLVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTAFKEEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELGFAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDL 292          
BLAST of FC932494 vs. ExPASy Swiss-Prot
Match: AB2F_ARATH (ABC transporter F family member 2 OS=Arabidopsis thaliana GN=ABCF2 PE=3 SV=2)

HSP 1 Score: 287.73 bits (735), Expect = 3.228e-77
Identity = 148/209 (70.81%), Postives = 168/209 (80.38%), Query Frame = 3
Query:    3 NKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXVPTNHLDL 629
            +KQSN GASSISSGV+LENISKSY+G+TVLKDVTWE              AGKTTQLRII GQEEPDSGNVI AK N+K+AFLSQEFEVSM +TV+EEFM  FKEEMEIA KLE +QKA+E AVDD++LMG+LLDEFDLLQR+AQ V+LD++ AK+SKLM ELGF ++D DRLVASFSSGWQMRMSLGKI            PTNHLDL
Sbjct:   70 SKQSNNGASSISSGVRLENISKSYEGITVLKDVTWEVKKGEKVGLIGVNGAGKTTQLRIITGQEEPDSGNVIWAKPNLKVAFLSQEFEVSMGKTVKEEFMCTFKEEMEIARKLENLQKAIEEAVDDLELMGKLLDEFDLLQRRAQEVDLDSIHAKISKLMSELGFVSEDADRLVASFSSGWQMRMSLGKILLQNPDLLLLDEPTNHLDL 278          
BLAST of FC932494 vs. ExPASy Swiss-Prot
Match: YDIF_BACSU (Uncharacterized ABC transporter ATP-binding protein ydiF OS=Bacillus subtilis GN=ydiF PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.277e-14
Identity = 51/195 (26.15%), Postives = 97/195 (49.74%), Query Frame = 3
Query:   45 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXVPTNHLDL 629
            +++  +SKS+   T+L ++  E              AGK+T L+IIAGQ   + G +IK K ++ + +L+Q   +    T++EE ++ F     +  ++  +++ + +A  D   +  ++  +D LQ++ +       +A V  ++  LGF+  D    V S S G + R++LGK+            PTNHLD+
Sbjct:    4 LQVNQLSKSFGADTILNNIKLEVRNRDRIAIVGRNGAGKSTLLKIIAGQLSYEKGEIIKPK-DITMGYLAQHTGLDSKLTIKEELLTVFDHLKAMEKEMRAMEEKMAAA--DPGELESIMKTYDRLQQEFKDKGGYQYEADVRSVLHGLGFSHFDDSTQVQSLSGGQKTRLALGKLLLTQPDLLILDEPTNHLDI 195          
BLAST of FC932494 vs. ExPASy Swiss-Prot
Match: AB4F_ARATH (ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.784e-12
Identity = 56/202 (27.72%), Postives = 93/202 (46.04%), Query Frame = 3
Query:   45 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA-------VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXVPTNHLDL 629
            + +E+ S S +G  +LK+ +                 GK+T L+++A ++ P          N+ +  + QE  V   ++     +SA +E +++  + E +QK+   A        DD D   +L + +D LQ     +  D  +A+ SK++  LGFT D   R   SFS GW+MR+SL +             PTNHLDL
Sbjct:  163 ITIESFSVSARGKELLKNASVRISHGKRYGLIGPNGMGKSTLLKLLAWRKIP-------VPKNIDVLLVEQEV-VGDEKSALNAVVSANEELVKLREEAEALQKSSSGADGENVDGEDDDDTGEKLAELYDRLQ----ILGSDAAEAQASKILAGLGFTKDMQVRATQSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDL 352          
The following BLAST results are available for this feature:
BLAST of FC932494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
AB5F_ARATH3.684e-8175.00ABC transporter F family member 5 OS=Arabidopsis t... [more]
AB2F_ARATH3.228e-7770.81ABC transporter F family member 2 OS=Arabidopsis t... [more]
YDIF_BACSU2.277e-1426.15Uncharacterized ABC transporter ATP-binding protei... [more]
AB4F_ARATH2.784e-1227.72ABC transporter F family member 4 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC34209B12EF PostHarveN Citrus clementina cDNA clone C34209B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932494 ID=FC932494; Name=FC932494; organism=Citrus clementina; type=EST; length=630bp
CAAACAAGCAATCAAACACGGGGGCTTCCAGTATTTCATCTGGGGTAAAG
TTAGAAAACATAAGCAAGAGCTACAAAGGAGTGACTGTATTGAAAGACGT
GACATGGGAAGTGAAAAAGGGCGAGAAAGTTGGCTTAGTGGGCGTTAATG
GAGCGGGGAAAACGACCCAGTTGAGAATTATCGCAGGGCAAGAGGAACCC
GATTCGGGGAATGTGATAAAGGCGAAGAGTAATATGAAAATTGCGTTCTT
GAGCCAAGAATTCGAGGTTTCAATGAGCAGAACGGTAAGAGAAGAGTTTA
TGAGTGCGTTTAAAGAGGAAATGGAGATTGCTGGGAAGTTGGAGAGAGTG
CAAAAGGCTTTAGAAAGTGCTGTTGATGATATGGATTTGATGGGGAGACT
TTTGGATGAGTTTGATTTGTTGCAGAGGAAAGCACAGGCTGTGAATTTGG
ATACGTTGGATGCTAAGGTTAGTAAGTTGATGCCGGAGCTAGGATTTACG
GCTGACGATGGAGATAGGTTGGTGGCATCGTTTAGTAGTGGGTGGCAGAT
GAGAATGTCGCTCGGGAAGATTTTGTTGCAGGATCCAGATTTATTGCTTC
TGGATGTGCCTACAAATCACCTTGATCTTG
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