FC932501
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932501 vs. ExPASy Swiss-Prot
Match: RING4_ARATH (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 3.789e-49 Identity = 102/170 (60.00%), Postives = 117/170 (68.82%), Query Frame = 1 Query: 157 STDDIVDTTPFLXXXXXXXXXXXXXXXXX---IRRQGLREAARFLRHASSRRTMREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSRNERPNMPLGLWIVGYAIQCVLHMVCVCVEYKXXXXXXVSAFGGAEEGNLNSGNTRGDSGEYVSLA 657 ++D I+DTTPFL RRQGLREAARFLRHA SRR MREPSM+VRETAAEQLEERQSDWAYSKPVV LDI+WNLAFVA+ +V++LSR+E+PNMPL +W+VGY IQC LHM CVCVEY+ GG SG T S +YVSLA Sbjct: 28 NSDGIIDTTPFLPPTVTRTISVDEESNPIHRSARRQGLREAARFLRHAGSRRMMREPSMLVRETAAEQLEERQSDWAYSKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEYRRRRRRRHPEDGG------GSGLTNSSSQQYVSLA 191 HSP 2 Score: 22.7126 bits (47), Expect = 3.789e-49 Identity = 12/22 (54.55%), Postives = 15/22 (68.18%), Query Frame = 3 Query: 660 QLEEEG--TSVAKHLESATQCF 719 QLE+ G ++ AKHLESA F Sbjct: 192 QLEDRGETSNPAKHLESANTMF 213
BLAST of FC932501 vs. ExPASy Swiss-Prot
Match: RING1_ARATH (E3 ubiquitin-protein ligase At1g12760 OS=Arabidopsis thaliana GN=At1g12760 PE=2 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 1.819e-45 Identity = 87/145 (60.00%), Postives = 107/145 (73.79%), Query Frame = 1 Query: 127 ATAMSTSTNQSTDDIVDTTPFLXXXXXXXXXXXXXXXXX--IRRQGLREAARFLRHASSRRTMREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSRNERPNMPLGLWIVGYAIQCVLHMVCVCVEYK 555 ++ + S++ S+ D +D P L +RRQGLREAARFL ASS R MREPSM+VRE AAEQLEERQSDWAYSKPVVVLDI+WNLAFV+VA +++V+SR E P MPL +W++GYA+QCVLHMVCVCVEY+ Sbjct: 10 SSLIPASSSSSSSDAIDPAPLLFNGDDNEGNNGGGGGERRSVRRQGLREAARFLSRASSGRVMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYR 154 HSP 2 Score: 27.7202 bits (60), Expect = 1.819e-45 Identity = 17/32 (53.12%), Postives = 19/32 (59.38%), Query Frame = 3 Query: 627 RRFGGVCFFS-NQLEEEGTSVAKHLESATQCF 719 RR GV S L+ E +SVAKHLESA F Sbjct: 192 RRNSGVQDLSLGHLDTESSSVAKHLESANTMF 223
BLAST of FC932501 vs. ExPASy Swiss-Prot
Match: RING2_ARATH (E3 ubiquitin-protein ligase At1g63170 OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2) HSP 1 Score: 172.17 bits (435), Expect = 9.666e-44 Identity = 86/141 (60.99%), Postives = 104/141 (73.76%), Query Frame = 1 Query: 244 IRRQGLREAARFLRHASS-RRTMREPSMMVRETAAEQLEERQSDWAYSKPVVVLDIIWNLAFVAVAFSVMVLSRNERPNMPLGLWIVGYAIQCVLHMVCVCVEYKXXXXXXVSAFGGAEEGNLNSGNTRGDSGEYVSLAIN 663 +RRQGLREAAR LRHASS R MREPSM+VRE AAEQLEERQSDWAYSKPVVVLD +WNLAFV VA +V+VLS +E PNMPL +WI+GY +QC++HMVCVCVEY+ + +S ++ D E + L+ N Sbjct: 24 VRRQGLREAARLLRHASSGRMMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVVATAVLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSSSSSSMDEEEGLGLSRN 164 HSP 2 Score: 26.1794 bits (56), Expect = 9.666e-44 Identity = 12/16 (75.00%), Postives = 12/16 (75.00%), Query Frame = 3 Query: 660 QLEEEGTSVAKHLESA 707 QLE E S AKHLESA Sbjct: 174 QLENENNSFAKHLESA 189 The following BLAST results are available for this feature:
BLAST of FC932501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 3
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC932501 ID=FC932501; Name=FC932501; organism=Citrus clementina; type=EST; length=725bpback to top |