FC932505

Overview
NameFC932505
Unique NameFC932505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_DESAP (30S ribosomal protein S17 OS=Desulforudis audaxviator (strain MP104C) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.478e-16
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 2
Query:  458 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            G VVS+KM K+VVVAVD L  H +Y R V+RT KFMAHDE+NQC IGD+V
Sbjct:   11 GRVVSDKMDKTVVVAVDTLVKHPLYGRTVRRTRKFMAHDEDNQCRIGDKV 60          

HSP 2 Score: 33.113 bits (74), Expect = 4.478e-16
Identity = 12/23 (52.17%), Postives = 19/23 (82.61%), Query Frame = 1
Query:  628 VRLDPSRPLSKHKHWAVAEILKK 696
            V++  +RPLS+HK W VAE+L++
Sbjct:   60 VKIAETRPLSRHKRWRVAEVLER 82          
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SYNS3 (30S ribosomal protein S17 OS=Synechococcus sp. (strain CC9311) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.664e-15
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 2
Query:  443 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +K  VG VVS+KM K+VVVAV+  F H +Y + V RT+++ AHDE+N C +GDRV
Sbjct:    3 LKERVGTVVSDKMDKTVVVAVENRFPHPIYQKTVSRTTRYKAHDEDNACRVGDRV 57          

HSP 2 Score: 35.4242 bits (80), Expect = 1.664e-15
Identity = 13/23 (56.52%), Postives = 19/23 (82.61%), Query Frame = 1
Query:  628 VRLDPSRPLSKHKHWAVAEILKK 696
            VR+  +RPLS+HK WA+AE+L +
Sbjct:   57 VRITETRPLSRHKRWAIAEVLSQ 79          
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_THETN (30S ribosomal protein S17 OS=Thermoanaerobacter tengcongensis GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.812e-15
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 2
Query:  440 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVSTL 616
            Q K  +G VVSNKMQK++VVAV+  F H +Y + VKRT K+  HDENN CN+GD V  +
Sbjct:    5 QRKVRIGTVVSNKMQKTIVVAVEDKFRHPLYGKIVKRTKKYKVHDENNICNVGDVVKIM 63          

HSP 2 Score: 30.0314 bits (66), Expect = 2.812e-15
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  628 VRLDPSRPLSKHKHWAVAEILKK 696
            V++  +RPLSK K W + E++KK
Sbjct:   60 VKIMETRPLSKEKRWRLVEVIKK 82          
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SYNPX (30S ribosomal protein S17 OS=Synechococcus sp. (strain WH8102) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.812e-15
Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 2
Query:  443 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +K  VG VVS+KM+K+VVVAV+  F H +Y + V RT+++ AHDE+N C +GDRV
Sbjct:    3 VKERVGTVVSDKMEKTVVVAVESRFPHPIYQKTVSRTTRYKAHDEDNSCRVGDRV 57          

HSP 2 Score: 34.2686 bits (77), Expect = 2.812e-15
Identity = 12/21 (57.14%), Postives = 18/21 (85.71%), Query Frame = 1
Query:  628 VRLDPSRPLSKHKHWAVAEIL 690
            VR+  +RP+S+HK WA+AE+L
Sbjct:   57 VRITETRPMSRHKRWAIAEVL 77          
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_SYNPW (30S ribosomal protein S17 OS=Synechococcus sp. (strain WH7803) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 4.752e-15
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 2
Query:  443 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            +K  VG VVS+KM K+VVVAV+  F H +Y + V RT+++ AHDENN   +GDRV
Sbjct:    3 LKERVGTVVSDKMDKTVVVAVENRFPHPIYQKTVSRTTRYKAHDENNSVRVGDRV 57          

HSP 2 Score: 35.4242 bits (80), Expect = 4.752e-15
Identity = 14/21 (66.67%), Postives = 18/21 (85.71%), Query Frame = 1
Query:  628 VRLDPSRPLSKHKHWAVAEIL 690
            VR+  +RPLS+HK WAVAE+L
Sbjct:   57 VRITETRPLSRHKRWAVAEVL 77          
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_PELCD (30S ribosomal protein S17 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.177e-15
Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  446 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVSTL 616
            K+ VG+V+S+KM K+VVV VD++  H +Y +Y+KR   F AHDE N+CN+GD+VS +
Sbjct:    9 KTRVGVVISDKMDKTVVVKVDQMVKHPIYKKYIKRRVTFKAHDEENRCNVGDKVSVV 65          

HSP 2 Score: 29.261 bits (64), Expect = 6.177e-15
Identity = 12/20 (60.00%), Postives = 16/20 (80.00%), Query Frame = 1
Query:  643 SRPLSKHKHWAVAEILKKHV 702
            +RPLS+ K W V EIL+K+V
Sbjct:   67 TRPLSRDKRWRVREILEKNV 86          
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_DESOH (30S ribosomal protein S17 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 8.030e-15
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 2
Query:  458 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            G VVS+KM K+V+VAV+RL  H+ Y +YV+RT+KF AHDE NQC +GD+V
Sbjct:   12 GTVVSDKMDKTVIVAVERLVKHQEYKKYVRRTAKFAAHDEQNQCAVGDKV 61          

HSP 2 Score: 29.261 bits (64), Expect = 8.030e-15
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 1
Query:  628 VRLDPSRPLSKHKHWAVAEILKKHV 702
            V +  SRPLS+ KHW V  +++K V
Sbjct:   61 VIITESRPLSRTKHWRVVNVVEKAV 85          
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_PELTS (30S ribosomal protein S17 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.044e-14
Identity = 32/57 (56.14%), Postives = 41/57 (71.93%), Query Frame = 2
Query:  446 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVSTL 616
            K++ G VVSNKM K+VVVAV+ L  H +Y R ++RT KF AHDE N C IGD+V  +
Sbjct:    8 KTLTGRVVSNKMDKTVVVAVETLVRHPLYQRTIRRTKKFKAHDEENACRIGDKVKMM 64          

HSP 2 Score: 29.6462 bits (65), Expect = 1.044e-14
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  628 VRLDPSRPLSKHKHWAVAEILKK 696
            V++  +RPLSK K W V EIL++
Sbjct:   61 VKMMETRPLSKEKRWRVVEILER 83          
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_THESQ (30S ribosomal protein S17 OS=Thermotoga sp. (strain RQ2) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-14
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 2
Query:  446 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            K + G+VVS+KM K+VVVAV++L  H +Y +YVKRT K+ AHDE N+C IGD V
Sbjct:    4 KRLTGIVVSDKMDKTVVVAVEKLVQHTIYKKYVKRTKKYHAHDERNECKIGDVV 57          

HSP 2 Score: 27.335 bits (59), Expect = 1.357e-14
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  628 VRLDPSRPLSKHKHWAVAEILKK 696
            V ++ +RPLSK K W V  I+++
Sbjct:   57 VEIEETRPLSKTKRWRVVRIIQR 79          
BLAST of FC932505 vs. ExPASy Swiss-Prot
Match: RS17_THEP1 (30S ribosomal protein S17 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.357e-14
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 2
Query:  446 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRV 607
            K + G+VVS+KM K+VVVAV++L  H +Y +YVKRT K+ AHDE N+C IGD V
Sbjct:    4 KRLTGIVVSDKMDKTVVVAVEKLVQHPIYKKYVKRTKKYHAHDERNECKIGDVV 57          

HSP 2 Score: 27.335 bits (59), Expect = 1.357e-14
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  628 VRLDPSRPLSKHKHWAVAEILKK 696
            V ++ +RPLSK K W V  I+++
Sbjct:   57 VEIEETRPLSKTKRWRVVRIIQR 79          
The following BLAST results are available for this feature:
BLAST of FC932505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
RS17_DESAP4.478e-1668.0030S ribosomal protein S17 OS=Desulforudis audaxvia... [more]
RS17_SYNS31.664e-1554.5530S ribosomal protein S17 OS=Synechococcus sp. (st... [more]
RS17_THETN2.812e-1555.9330S ribosomal protein S17 OS=Thermoanaerobacter te... [more]
RS17_SYNPX2.812e-1554.5530S ribosomal protein S17 OS=Synechococcus sp. (st... [more]
RS17_SYNPW4.752e-1554.5530S ribosomal protein S17 OS=Synechococcus sp. (st... [more]
RS17_PELCD6.177e-1552.6330S ribosomal protein S17 OS=Pelobacter carbinolic... [more]
RS17_DESOH8.030e-1562.0030S ribosomal protein S17 OS=Desulfococcus oleovor... [more]
RS17_PELTS1.044e-1456.1430S ribosomal protein S17 OS=Pelotomaculum thermop... [more]
RS17_THESQ1.357e-1459.2630S ribosomal protein S17 OS=Thermotoga sp. (strai... [more]
RS17_THEP11.357e-1459.2630S ribosomal protein S17 OS=Thermotoga petrophila... [more]

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Properties
Property NameValue
Genbank descriptionC34209C12EF PostHarveN Citrus clementina cDNA clone C34209C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932505 ID=FC932505; Name=FC932505; organism=Citrus clementina; type=EST; length=725bp
GTATTTTGATTTACGCATTCTTTTTGTTTACCATATTTCATCTTGAAATT
TAAAATCTCTCTGAACTTCCGATAGTAAGCTTTATTTAGCTGGTGAGCTA
CGGCGGTAGGTCCGTTCGCTAGAGCTATCTTAGCAAGTACCAACCTTTTA
GCTTCAAGTTTCTCACCTTAGTCACAAACACAGTCGATGAGTTTAAAGCA
ACAATAAACGAAATCCAATTTCACTCAACTCAGACACTAACCGCCCCCTG
AACCCCTGCCGCCGCCTCACCACAAGTTATTGTCGTGCGCCGTCGACCTC
CGTCAGCATCTGCCGTCACTGTAGTATCACTGTTGAAGCATAGTAATCAG
GTACCATTTTGATTTACTCTCTTATCCATTTTTAACTTTGATTTTTGTTT
CCTCGTGGTCTAAACCCTAGCATCGTCGTCAGGCCGTCACAAATGAAGTC
GGTGGTGGGATTGGTAGTGTCAAACAAGATGCAAAAATCAGTAGTGGTGG
CCGTTGACAGACTCTTTCACCACAAGGTTTACAATCGGTATGTCAAACGA
ACCTCCAAATTCATGGCCCACGACGAGAACAATCAATGCAACATCGGTGA
CCGAGTTAGTACTCTTATGCCTCTTAAGTTAGGTTGGATCCTTCTAGACC
GTTAAGCAAGCATAAGCATTGGGCTGTTGCCGAAATTCTAAAAAAGCACG
TATCTATGTACACCCTCAGCGGATA
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