FC932506

Overview
NameFC932506
Unique NameFC932506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932506 vs. ExPASy Swiss-Prot
Match: UK114_MOUSE (Ribonuclease UK114 OS=Mus musculus GN=Hrsp12 PE=1 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 3.851e-34
Identity = 68/125 (54.40%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKVSGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 591
            S +++ + T KAPAA+GPYSQA++ +  +++SG +GL P +G+ V   + ++ +Q LKN+GEILK +G D+++VVKTT+LLAD+ DF TVNEIY  YF    PARA YQVAALP  +RVEIE IA
Sbjct:    3 SIIRKVISTTKAPAAIGPYSQAVQVDRTIYISGQVGLDPSSGQLVPGGVVEEAKQALKNLGEILKAAGCDFNNVVKTTVLLADMNDFGTVNEIYKTYFQGSLPARAAYQVAALPRGSRVEIEAIA 127          
BLAST of FC932506 vs. ExPASy Swiss-Prot
Match: UK114_HUMAN (Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.568e-34
Identity = 66/125 (52.80%), Postives = 94/125 (75.20%), Query Frame = 1
Query:  217 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKVSGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 591
            S ++  + T KAP A+GPYSQA+  +  +++SG +G+ P +G+ VS  + ++ +Q LKN+GEILK +G D+++VVKTT+LLAD+ DF TVNEIY +YF S  PARA YQVAALP  +R+EIE +A
Sbjct:    3 SLIRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGEILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIEAVA 127          
BLAST of FC932506 vs. ExPASy Swiss-Prot
Match: UK114_RAT (Ribonuclease UK114 OS=Rattus norvegicus GN=Hrsp12 PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 7.262e-33
Identity = 66/125 (52.80%), Postives = 93/125 (74.40%), Query Frame = 1
Query:  217 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKVSGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 591
            S +++ + T+KAPAA+G YSQA+  +  ++VSG +G+ P +G+ V   + ++ +Q LKN+GEILK +G D+++VVKTT+LLAD+ DF TVNEIY  YF    PARA YQVAALP  +R+EIE IA
Sbjct:    3 SIIRKVISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGEILKAAGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGNLPARAAYQVAALPKGSRIEIEAIA 127          
BLAST of FC932506 vs. ExPASy Swiss-Prot
Match: UK114_BOVIN (Ribonuclease UK114 OS=Bos taurus GN=HRSP12 PE=2 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.239e-32
Identity = 66/125 (52.80%), Postives = 92/125 (73.60%), Query Frame = 1
Query:  217 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKVSGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 591
            S +++ + T KAPAA+GPYSQA+  +  +++SG LG+ P +G+ V   + ++ +Q L NIGEILK +G D+++VVK T+LLAD+ DF TVN++Y +YF S  PARA YQVAALP   RVEIE IA
Sbjct:    3 SLVRKIISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVAEEAKQALTNIGEILKAAGCDFTNVVKATVLLADINDFSTVNDVYKQYFQSSFPARAAYQVAALPKGGRVEIEAIA 127          
BLAST of FC932506 vs. ExPASy Swiss-Prot
Match: YSD2_CAEEL (UPF0076 protein C23G10.2 OS=Caenorhabditis elegans GN=C23G10.2 PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.618e-32
Identity = 67/122 (54.92%), Postives = 89/122 (72.95%), Query Frame = 1
Query:  226 KEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKVSGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 591
            ++ + +  AP A+GPYSQA++A N +++SG LGL P+TG      +E QT Q LKN+GE+LK +GADY +VVKTT+LL ++ DF  VNE+Y +YF SP PARA YQVAALP    VEIE +A
Sbjct:   41 RQIISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVE-QTHQSLKNLGEVLKAAGADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLVEIEAVA 161          
BLAST of FC932506 vs. ExPASy Swiss-Prot
Match: UK114_CAPHI (Ribonuclease UK114 OS=Capra hircus GN=HRSP12 PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 8.029e-32
Identity = 65/125 (52.00%), Postives = 90/125 (72.00%), Query Frame = 1
Query:  217 SNLKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKVSGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 591
            S ++  + T KAPAA+GPYSQA+  +  +++SG LG+ P +G+ V   + ++ +Q L NIGEILK +G D+++VVK T+LLAD+ DF  VN++Y +YF S  PARA YQVAALP   RVEIE IA
Sbjct:    3 SLVRRIISTAKAPAAIGPYSQAVLVDRTIYISGQLGMDPASGQLVPGGVVEEAKQALTNIGEILKAAGCDFTNVVKATVLLADINDFSAVNDVYKQYFQSSFPARAAYQVAALPKGGRVEIEAIA 127          
BLAST of FC932506 vs. ExPASy Swiss-Prot
Match: Y944_HELPY (UPF0076 protein HP_0944 OS=Helicobacter pylori GN=HP_0944 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.754e-30
Identity = 71/123 (57.72%), Postives = 82/123 (66.67%), Query Frame = 1
Query:  223 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKVSGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 591
            +KE + +  AP A+GPYSQAI  N+LVFVSG LG+   TG+F    I  QT Q ++NI  ILK +G    SVVKTTILL  L DF  VN IY  YF  P PARAT+QVA LP DA VEIE IA
Sbjct:    1 MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLKSLDDFAVVNGIYGSYFTEPYPARATFQVAKLPKDALVEIEAIA 123          
BLAST of FC932506 vs. ExPASy Swiss-Prot
Match: Y944_HELPJ (UPF0076 protein jhp_0879 OS=Helicobacter pylori J99 GN=jhp_0879 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.754e-30
Identity = 71/123 (57.72%), Postives = 82/123 (66.67%), Query Frame = 1
Query:  223 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKVSGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 591
            +KE + +  AP A+GPYSQAI  N+LVFVSG LG+   TG+F    I  QT Q ++NI  ILK +G    SVVKTTILL  L DF  VN IY  YF  P PARAT+QVA LP DA VEIE IA
Sbjct:    1 MKEVIHSTLAPKAIGPYSQAIATNDLVFVSGQLGIDVSTGEFKGADIHSQTTQSMENIKAILKEAGLGMDSVVKTTILLKSLDDFAVVNGIYGSYFKEPYPARATFQVAKLPKDALVEIEAIA 123          
BLAST of FC932506 vs. ExPASy Swiss-Prot
Match: Y4SK_RHISN (UPF0076 protein y4sK OS=Rhizobium sp. (strain NGR234) GN=NGR_a01620 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.856e-29
Identity = 64/123 (52.03%), Postives = 83/123 (67.48%), Query Frame = 1
Query:  229 EAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKVSGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIAAL 597
            E + TN AP A+GPYSQAIK  +L+FVSG L + P TG+F S    +Q EQ LKN+  I + +G D S  VKTT+LL DL DF  +N +Y  +F +P PARA Y+V ALP  A+VEIE + +L
Sbjct:    3 EPISTNDAPGAVGPYSQAIKVGDLLFVSGQLPIDPATGEFNSANAVEQAEQCLKNLQAIARAAGTDLSKTVKTTVLLTDLGDFADINRVYTGFFSTPYPARACYEVKALPKGAKVEIEAVISL 125          
BLAST of FC932506 vs. ExPASy Swiss-Prot
Match: Y854_PYRHO (UPF0076 protein PH0854 OS=Pyrococcus horikoshii GN=PH0854 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 9.186e-28
Identity = 58/123 (47.15%), Postives = 82/123 (66.67%), Query Frame = 1
Query:  223 LKEAVVTNKAPAALGPYSQAIKANNLVFVSGVLGLVPETGKFVSDTIEDQTEQVLKNIGEILKVSGADYSSVVKTTILLADLKDFKTVNEIYAKYFPSPAPARATYQVAALPLDARVEIECIA 591
            +KE + T  AP  +GPYSQAIKA N +F++G + + P+TG+ V   I+DQT QVL+NI  IL+ +G   + V+K T+ L D+ DF  +NE+YA+YF    PAR   +V+ LP D  +EIE IA
Sbjct:    1 MKEVIFTENAPKPIGPYSQAIKAGNFLFIAGQIPIDPKTGEIVKGDIKDQTRQVLENIKAILEAAGYSLNDVIKVTVYLKDMNDFAKMNEVYAEYFGESKPARVAVEVSRLPKDVLIEIEAIA 123          
The following BLAST results are available for this feature:
BLAST of FC932506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
UK114_MOUSE3.851e-3454.40Ribonuclease UK114 OS=Mus musculus GN=Hrsp12 PE=1 ... [more]
UK114_HUMAN6.568e-3452.80Ribonuclease UK114 OS=Homo sapiens GN=HRSP12 PE=1 ... [more]
UK114_RAT7.262e-3352.80Ribonuclease UK114 OS=Rattus norvegicus GN=Hrsp12 ... [more]
UK114_BOVIN1.239e-3252.80Ribonuclease UK114 OS=Bos taurus GN=HRSP12 PE=2 SV... [more]
YSD2_CAEEL1.618e-3254.92UPF0076 protein C23G10.2 OS=Caenorhabditis elegans... [more]
UK114_CAPHI8.029e-3252.00Ribonuclease UK114 OS=Capra hircus GN=HRSP12 PE=1 ... [more]
Y944_HELPY5.754e-3057.72UPF0076 protein HP_0944 OS=Helicobacter pylori GN=... [more]
Y944_HELPJ5.754e-3057.72UPF0076 protein jhp_0879 OS=Helicobacter pylori J9... [more]
Y4SK_RHISN2.856e-2952.03UPF0076 protein y4sK OS=Rhizobium sp. (strain NGR2... [more]
Y854_PYRHO9.186e-2847.15UPF0076 protein PH0854 OS=Pyrococcus horikoshii GN... [more]

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Properties
Property NameValue
Genbank descriptionC34209D01EF PostHarveN Citrus clementina cDNA clone C34209D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932506 ID=FC932506; Name=FC932506; organism=Citrus clementina; type=EST; length=673bp
GAAAACTGAGAGAGCAACAGCGACAAAGACGAAGACATGGCGTGGTGTTC
ATTACGGTCGTTGAATGTCCCAACCATCGACATGGGCGCACTGCGCACCC
GCTCTCGCTTAGCCGCCGTCGGAATCGGCTGCGCCTCGGTCGCCGGGTCC
AGCGTCTGGCGCTCTTCTTGCAAGAAACACTCCACTCCCTTTGCTTGCTT
ATCCACTTCCGCCGTTTCTAATTTGAAGGAGGCTGTTGTGACTAACAAGG
CTCCAGCAGCATTGGGACCTTATTCTCAGGCCATCAAAGCAAATAACCTC
GTTTTTGTCTCTGGGGTTCTTGGTTTAGTTCCAGAGACTGGGAAATTTGT
CTCAGATACTATAGAGGACCAGACAGAGCAGGTTCTTAAAAATATTGGGG
AAATACTGAAAGTTAGCGGCGCTGACTATTCCTCTGTGGTTAAGACAACA
ATTTTGTTGGCAGACTTGAAAGACTTCAAGACAGTGAATGAGATCTATGC
TAAATACTTTCCTTCACCAGCTCCAGCACGTGCAACATATCAAGTAGCAG
CACTGCCGTTGGATGCCAGGGTTGAGATTGAATGCATTGCAGCCCTTCCC
AATGCTTGATTGGGGTGAAATTCTTCCAGATATCGAATAAAGGGGAAGAA
GCACACTTTGAGACAGGATTTGG
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