FC932549

Overview
NameFC932549
Unique NameFC932549
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932549 vs. ExPASy Swiss-Prot
Match: TRNH1_ARATH (Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.692e-59
Identity = 117/212 (55.19%), Postives = 142/212 (66.98%), Query Frame = 3
Query:   63 MANAESSFKSSRWSLKGMTALVTGGTRGIGQATVEELAGLGAVVHTCSRNEVELNRCLKEWQSKGFVVTGSVCDAASPDQREKLIQEVGSKFNGKLNILVNNVGTNIRKPTIEYSAEEYSKIMTTNFESTYHLCQLVYPLLKAXXXXXXXXXXXXXXXXXXXXXXIYGATKAAMNQLTRNLACEWAKDNIRTNSVAPWYTKTSLVERLLENK 698
            MA AE   +S RWSLK  T LVTGGT+GIG A VEE AG GAV+HTC+RNE ELN CL +WQ KGF VTGSVCDA+   +REKL+Q V S F GKL+IL+NN+G    KPT++Y+AE++S  ++TN ES YHL QL +PLLKA                      IY ATK A+NQL RNLACEWA D IR N+VAP    T L E + +++
Sbjct:    1 MAGAE---QSQRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDE 209          
BLAST of FC932549 vs. ExPASy Swiss-Prot
Match: TRNH_DATST (Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.433e-58
Identity = 111/206 (53.88%), Postives = 142/206 (68.93%), Query Frame = 3
Query:   63 MANAESSFKSSRWSLKGMTALVTGGTRGIGQATVEELAGLGAVVHTCSRNEVELNRCLKEWQSKGFVVTGSVCDAASPDQREKLIQEVGSKFNGKLNILVNNVGTNIRKPTIEYSAEEYSKIMTTNFESTYHLCQLVYPLLKAXXXXXXXXXXXXXXXXXXXXXXIYGATKAAMNQLTRNLACEWAKDNIRTNSVAPWYTKTSLVE 680
            MA  E      RWSL+GMTALVTGGTRGIG A VEELA  GA V+TCSR++ +L+ CL++W+ KGF V+G VCD +S  QR+ L++ V S FNGKLNIL+NN GT I K    ++AE+YS IM TNFE++Y+LCQL +PLLKA                      IY A+K A+NQ+T++LACEWAKD+IR N+VAPW   T ++E
Sbjct:    1 MAGREIGGGDRRWSLRGMTALVTGGTRGIGYAIVEELANFGAEVYTCSRSQNDLDECLEKWRRKGFKVSGPVCDVSSISQRQTLMESVTSSFNGKLNILINNAGTTIPKEATNFTAEDYSIIMGTNFEASYNLCQLAHPLLKASGNASIVFNSSAAGVIAVPLSSIYAASKGAINQVTKSLACEWAKDSIRVNAVAPWIINTPIIE 206          
BLAST of FC932549 vs. ExPASy Swiss-Prot
Match: TRN1_DATST (Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.936e-55
Identity = 112/214 (52.34%), Postives = 141/214 (65.89%), Query Frame = 3
Query:   51 NKAAMANAESSFKSSRWSLKGMTALVTGGTRGIGQATVEELAGLGAVVHTCSRNEVELNRCLKEWQSKGFVVTGSVCDAASPDQREKLIQEVGSKFNGKLNILVNNVGTNIRKPTIEYSAEEYSKIMTTNFESTYHLCQLVYPLLKAXXXXXXXXXXXXXXXXXXXXXXIYGATKAAMNQLTRNLACEWAKDNIRTNSVAPWYTKTSLVERLLE 692
            +K +M N  +     RWSLKG TALVTGG++GIG A VEELAGLGA V+TCSRNE EL+ CL+ W+ KG  V GSVCD  S  +R+KL+Q V   F+GKLNILVNN G  I K   +++ ++Y+ IM TNFE+ YHL Q+ YPLLKA                      +Y A+K A+NQ+T++LACEWAKDNIR NSVAP    T LVE  ++
Sbjct:    4 SKVSMMNCNNE---GRWSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIK 214          
BLAST of FC932549 vs. ExPASy Swiss-Prot
Match: TRN2_DATST (Tropinone reductase 2 OS=Datura stramonium GN=TR2 PE=1 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.367e-53
Identity = 107/202 (52.97%), Postives = 133/202 (65.84%), Query Frame = 3
Query:   90 SSRWSLKGMTALVTGGTRGIGQATVEELAGLGAVVHTCSRNEVELNRCLKEWQSKGFVVTGSVCDAASPDQREKLIQEVGSKFNGKLNILVNNVGTNIRKPTIEYSAEEYSKIMTTNFESTYHLCQLVYPLLKAXXXXXXXXXXXXXXXXXXXXXXIYGATKAAMNQLTRNLACEWAKDNIRTNSVAPWYTKTSLVERLLEN 695
            + RW+L+G TALVTGG+RGIG   VEELA LGA V+TCSRN+ ELN CL +W+SKGF V  SVCD +S  +R++L+  V + F+GKLNILVNN G  I K   +Y+ E+YS IM+ NFE+ YHL  L +P LKA                      +YGATK AM+QLTR LA EWAKDNIR N V P    TSLVE  +++
Sbjct:    2 AGRWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQD 203          
BLAST of FC932549 vs. ExPASy Swiss-Prot
Match: TRN2_HYONI (Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.175e-52
Identity = 105/202 (51.98%), Postives = 133/202 (65.84%), Query Frame = 3
Query:   90 SSRWSLKGMTALVTGGTRGIGQATVEELAGLGAVVHTCSRNEVELNRCLKEWQSKGFVVTGSVCDAASPDQREKLIQEVGSKFNGKLNILVNNVGTNIRKPTIEYSAEEYSKIMTTNFESTYHLCQLVYPLLKAXXXXXXXXXXXXXXXXXXXXXXIYGATKAAMNQLTRNLACEWAKDNIRTNSVAPWYTKTSLVERLLEN 695
            + RW+L+G TALVTGG+RGIG   VEELA LGA V+TCSRN+ EL+ CL +W+SKGF V  SVCD +S  +RE+ ++ V + F+GKLNILVNN G  I K   +Y+ E+YS IM+ NFE+ YHL  L +P LKA                      +YGATK AM+QLTR LA EWAKDNIR N V P    TS+VE  +++
Sbjct:    2 AGRWNLEGCTALVTGGSRGIGYGIVEELANLGASVYTCSRNQKELDECLTQWRSKGFNVEASVCDLSSRSEREEFMKTVSNHFHGKLNILVNNAGIVIYKEAKDYTMEDYSHIMSINFEAAYHLSVLAHPFLKASERGNVVFISSISGASALPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSMVEMTIQD 203          
BLAST of FC932549 vs. ExPASy Swiss-Prot
Match: DHK1_STRVN (Granaticin polyketide synthase putative ketoacyl reductase 1 OS=Streptomyces violaceoruber GN=gra-orf5 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.449e-18
Identity = 63/194 (32.47%), Postives = 94/194 (48.45%), Query Frame = 3
Query:  120 ALVTGGTRGIGQATVEELAGLGAVVHTCSRNEVELNRCLKEWQSKGFVVTGSVCDAASPDQREKLIQEVGSKFNGKLNILVNNVGTNIRKPTIEYSAEEYSKIMTTNFESTYHLCQLVYPL--LKAXXXXXXXXXXXXXXXXXXXXXXIYGATKAAMNQLTRNLACEWAKDNIRTNSVAPWYTKTSLVERLLEN 695
            ALVTG T GIG A    LA LGA    C+R+E  L + +KE + +GF V G+VCD A P Q    +     ++ G ++ILVNN G +    T E + E +  ++TTN  S + + + V     + A                       Y A+K  +  LT+ L  E A+  I  N+V P + +T + ER+ E+
Sbjct:   20 ALVTGATSGIGLAIARRLAALGARTFLCARDEERLAQTVKELRGEGFDVDGTVCDVADPAQIRAYVAAAVQRY-GTVDILVNNAGRSGGGATAEIADELWLDVITTNLTSVFLMTKEVLNAGGMLAKKRGRIINIASTGGKQGVVHAVPYSASKHGVVGLTKALGLELARTGITVNAVCPGFVETPMAERVREH 212          
BLAST of FC932549 vs. ExPASy Swiss-Prot
Match: GNO_GLUOX (Gluconate 5-dehydrogenase OS=Gluconobacter oxydans GN=gno PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.570e-17
Identity = 56/200 (28.00%), Postives = 94/200 (47.00%), Query Frame = 3
Query:   99 WSLKGMTALVTGGTRGIGQATVEELAGLGAVVHTCSRNEVELNRCLKEWQSKGFVVTGSVCDAASPDQREKLIQEVGSKFNGKLNILVNNVGTNIRKPTIEYSAEEYSKIMTTNFESTYHLCQLVYPLLKAXXXXXXXXXXXXXXXXXXXXXXIYGATKAAMNQLTRNLACEWAKDNIRTNSVAPWYTKTSLVERLLENK 698
            +SL G  ALVTG +RGIG    + LA  GA V    RN   L+     ++++G   + +V D    D     +  +  +  G ++IL+NN G   R P  E+S +++  +M+TN  + + + Q V   +                         Y ATK A+  LT+ +A +W +  ++ N +AP Y  T + ERL+ ++
Sbjct:    7 FSLSGARALVTGASRGIGLTLAKGLARYGAEVVLNGRNAESLDSAQSGFEAEGLKASTAVFDVTDQDAVIDGVAAI-ERDMGPIDILINNAGIQRRAPLEEFSRKDWDDLMSTNVNAVFFVGQAVARHMIPRGRGKIVNICSVQSELARPGIAPYTATKGAVKNLTKGMATDWGRHGLQINGLAPGYFATEMTERLVADE 205          
BLAST of FC932549 vs. ExPASy Swiss-Prot
Match: DHRS4_RABIT (Dehydrogenase/reductase SDR family member 4 OS=Oryctolagus cuniculus GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.570e-17
Identity = 64/208 (30.77%), Postives = 97/208 (46.63%), Query Frame = 3
Query:   78 SSFKSSRWSLKGMTALVTGGTRGIGQATVEELAGLGAVVHTCSRNEVELNRCLKEWQSKGFVVTGSVCDAASPDQREKLIQEVGSKFNGKLNILVNNVGTN-IRKPTIEYSAEEYSKIMTTNFESTYHLCQLVYPLLKAXXXXXXXXXXXXXXXXXXXXXXIYGATKAAMNQLTRNLACEWAKDNIRTNSVAPWYTKTSLVERLLENK 698
            SS  + R  L    A+VT  T GIG A    LA  GA V   SR +  ++R +   Q++G  VTG+VC     + RE+L+       +G ++ILV+N   N      ++ + E + KI+  N ++   + + V P ++                        Y  +K A+  LT+NLA E A  NIR N +AP   KTS  + L E+K
Sbjct:    3 SSGVTRRDPLANKVAIVTASTDGIGLAIARRLAQDGAHVVISSRKQQNVDRAVAALQAEGLSVTGTVCHVGKAEDRERLV-ATALNLHGGIDILVSNAAVNPFFGKLMDVTEEVWDKILDINVKAMALMTKAVVPEMEKRGGGSVVIVASIAAFNPFSGLGPYNVSKTALVGLTKNLALELAAQNIRVNCLAPGLIKTSFSKALWEDK 209          
BLAST of FC932549 vs. ExPASy Swiss-Prot
Match: DHRS4_PIG (Dehydrogenase/reductase SDR family member 4 OS=Sus scrofa GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 63/202 (31.19%), Postives = 95/202 (47.03%), Query Frame = 3
Query:   96 RWSLKGMTALVTGGTRGIGQATVEELAGLGAVVHTCSRNEVELNRCLKEWQSKGFVVTGSVCDAASPDQREKLIQEVGSKFNGKLNILVNNVGTN-IRKPTIEYSAEEYSKIMTTNFESTYHLCQLVYPLLKAXXXXXXXXXXXXXXXXXXXXXXIYGATKAAMNQLTRNLACEWAKDNIRTNSVAPWYTKTSLVERLLENK 698
            R  L+   ALVT  T GIG A    LA  GA V   SR +  ++R +   Q +G  VTG+VC     + RE+L+  +    +G ++ILV+N   N      I+ + E + KI+  N ++T  + + V P ++                        Y  +K A+  LT+NLA E A  NIR N +AP   KT+  + L  +K
Sbjct:    9 RKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLV-AMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLWMDK 209          
BLAST of FC932549 vs. ExPASy Swiss-Prot
Match: DHRS4_MOUSE (Dehydrogenase/reductase SDR family member 4 OS=Mus musculus GN=Dhrs4 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 65/208 (31.25%), Postives = 92/208 (44.23%), Query Frame = 3
Query:   78 SSFKSSRWSLKGMTALVTGGTRGIGQATVEELAGLGAVVHTCSRNEVELNRCLKEWQSKGFVVTGSVCDAASPDQREKLIQEVGSKFNGKLNILVNNVGTN-IRKPTIEYSAEEYSKIMTTNFESTYHLCQLVYPLLKAXXXXXXXXXXXXXXXXXXXXXXIYGATKAAMNQLTRNLACEWAKDNIRTNSVAPWYTKTSLVERLLENK 698
            SS  + R  L    ALVT  T GIG A    LA  GA V   SR +  ++R +   Q +G  VTG VC     + REKLI     +  G ++ILV+N   N      ++ + E + K+++ N  +T  + + V P ++                        Y  +K A+  LT+N A E A  NIR N +AP   KT     L E K
Sbjct:    3 SSGLTRRNPLSNKVALVTASTDGIGFAIARRLAEDGAHVVVSSRKQQNVDRAVATLQGEGLSVTGIVCHVGKAEDREKLITTALKRHRG-IDILVSNAAVNPFFGNLMDVTEEVWDKVLSINVTATAMMIKAVVPEMEKRGGGSVVIVGSVAGFTRFPSLGPYNVSKTALLGLTKNFAAELAPKNIRVNCLAPGLIKTRFSSVLWEEK 209          
The following BLAST results are available for this feature:
BLAST of FC932549 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
TRNH1_ARATH1.692e-5955.19Tropinone reductase homolog At1g07440 OS=Arabidops... [more]
TRNH_DATST1.433e-5853.88Tropinone reductase homolog OS=Datura stramonium P... [more]
TRN1_DATST1.936e-5552.34Tropinone reductase 1 OS=Datura stramonium GN=TR1 ... [more]
TRN2_DATST2.367e-5352.97Tropinone reductase 2 OS=Datura stramonium GN=TR2 ... [more]
TRN2_HYONI1.175e-5251.98Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 P... [more]
DHK1_STRVN1.449e-1832.47Granaticin polyketide synthase putative ketoacyl r... [more]
GNO_GLUOX3.570e-1728.00Gluconate 5-dehydrogenase OS=Gluconobacter oxydans... [more]
DHRS4_RABIT3.570e-1730.77Dehydrogenase/reductase SDR family member 4 OS=Ory... [more]
DHRS4_PIG1.039e-1631.19Dehydrogenase/reductase SDR family member 4 OS=Sus... [more]
DHRS4_MOUSE1.772e-1631.25Dehydrogenase/reductase SDR family member 4 OS=Mus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34209G09EF PostHarveN Citrus clementina cDNA clone C34209G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932549 ID=FC932549; Name=FC932549; organism=Citrus clementina; type=EST; length=704bp
GATCGGGTTTATAAAACAAATCCATCCACAGAGAGTGAACAGTGAAGTAG
AATAAAGCGGCCATGGCAAATGCAGAGAGCAGTTTCAAGAGCTCAAGATG
GTCGCTCAAAGGAATGACTGCTCTTGTCACTGGTGGCACTCGTGGAATTG
GTCAAGCTACTGTGGAGGAACTGGCTGGGTTGGGTGCTGTGGTACACACA
TGTTCGAGAAACGAAGTTGAGCTGAATAGGTGCTTAAAAGAATGGCAAAG
CAAAGGCTTCGTTGTTACTGGGTCAGTTTGTGATGCTGCATCTCCTGATC
AGAGGGAGAAGCTGATTCAAGAAGTGGGTTCCAAGTTCAATGGCAAACTC
AACATTTTGGTAAACAACGTTGGAACTAATATCAGGAAGCCGACTATTGA
GTACTCTGCTGAAGAATATTCGAAAATAATGACTACCAACTTTGAATCCA
CATACCATCTGTGCCAACTTGTATATCCTCTTCTCAAAGCATCTGGAGTT
GGAAGCATCGTGTTCATTTCCTCTGTTGGTGGTCTCTCACATGTAGGGAG
TGGATCAATTTATGGAGCAACTAAAGCTGCAATGAATCAACTTACAAGAA
ATCTGGCTTGTGAATGGGCAAAAGACAATATCAGGACAAATTCTGTTGCA
CCGTGGTATACCAAGACCTCACTAGTAGAGCGTTTGCTTGAAAACAAGAA
TTTG
back to top