FC932587

Overview
NameFC932587
Unique NameFC932587
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932587 vs. ExPASy Swiss-Prot
Match: TIR1B_ORYSJ (Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica GN=Os04g0395600 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.515e-79
Identity = 143/225 (63.56%), Postives = 174/225 (77.33%), Query Frame = 3
Query:    9 LKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKE 683
            L+RLWVLD + D+GL+ V SSC  L+ELRVFP+D +    +  VTE G +AVS GCP+L  +LYFC  MTNAA+ T+ +NCPNFT FRLCI+ PG+PD VT++P+DE FGA+VR C  LQRLS+SGLLTD  F YIG+YAK LE+LS+AFAG SD GM  V+ GC  LRK EIRD PFGDAALL    + E+MRSLWMS+CNVT+ GC++LASK P LNVEVI E
Sbjct:  312 LQRLWVLDCISDKGLQVVASSCKDLQELRVFPSDFYVAGYS-AVTEEGLVAVSLGCPKLNSLLYFCHQMTNAALVTVAKNCPNFTRFRLCILEPGKPDVVTSQPLDEGFGAIVRECKGLQRLSISGLLTDKVFMYIGKYAKQLEMLSIAFAGDSDKGMMHVMNGCKNLRKLEIRDSPFGDAALLGNFARYETMRSLWMSSCNVTLKGCQVLASKMPMLNVEVINE 535          
BLAST of FC932587 vs. ExPASy Swiss-Prot
Match: TIR1_ARATH (Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2)

HSP 1 Score: 291.967 bits (746), Expect = 2.187e-78
Identity = 143/227 (63.00%), Postives = 170/227 (74.89%), Query Frame = 3
Query:    3 PLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKE 683
            P L+RLWVLD +ED GLE + S+C  L ELRVFP++PF  E    +TE G ++VS GCP+L+ VLYFC+ MTNAA+ TI RN PN T FRLCI+ P  PDY+T EP+D  FGA+V  C +L+RLSLSGLLTD  FEYIG YAK +E+LSVAFAG SD GM  VL GC  LRK EIRDCPFGD ALL+   K E+MRSLWMS+C+V+   CKLL  K P+LNVEVI E
Sbjct:  314 PKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540          
BLAST of FC932587 vs. ExPASy Swiss-Prot
Match: AFB2_ARATH (Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana GN=AFB2 PE=1 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.387e-77
Identity = 136/225 (60.44%), Postives = 172/225 (76.44%), Query Frame = 3
Query:    9 LKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKE 683
            L+RLW+LD++ D+GLE V S+C  L+ELRVFP+D      T  VTE G +A+S GCP+L  +LYFCQ MTNAA+ T+ +NCPNF  FRLCI+ P +PD+VT++P+DE FGA+V+ C +L+RLSLSGLLTD  F YIG YA  LE+LS+AFAG +D GM  VL GC K++K EIRD PFGD ALL+ + K E+MRSLWMS+C VT+ GCK LA K P LNVE+I E
Sbjct:  312 LQRLWILDSIGDKGLEVVASTCKELQELRVFPSDLLGGGNT-AVTEEGLVAISAGCPKLHSILYFCQQMTNAALVTVAKNCPNFIRFRLCILEPNKPDHVTSQPLDEGFGAIVKACKSLRRLSLSGLLTDQVFLYIGMYANQLEMLSIAFAGDTDKGMLYVLNGCKKMKKLEIRDSPFGDTALLADVSKYETMRSLWMSSCEVTLSGCKRLAEKAPWLNVEIINE 535          
BLAST of FC932587 vs. ExPASy Swiss-Prot
Match: AFB3_ARATH (Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana GN=AFB3 PE=1 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.242e-73
Identity = 130/226 (57.52%), Postives = 170/226 (75.22%), Query Frame = 3
Query:    9 LKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYG-VTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKE 683
            L+RLW+LD++ D+GL  V ++C  L+ELRVFP+D   EE     VTE G +A+S GCP+L  +LYFC+ MTNAA+  + +NCPNF  FRLCI+ P +PD++T + +DE FGA+V+ C  L+RLS+SGLLTD  F YIG YA+ LE+LS+AFAG +D GM  VL GC K+RK EIRD PFG+AALL+ + + E+MRSLWMS+C VT+ GCK LA   PRLNVE+I E
Sbjct:  312 LQRLWILDSIGDKGLAVVAATCKELQELRVFPSDVHGEEDNNASVTEVGLVAISAGCPKLHSILYFCKQMTNAALIAVAKNCPNFIRFRLCILEPHKPDHITFQSLDEGFGAIVQACKGLRRLSVSGLLTDQVFLYIGMYAEQLEMLSIAFAGDTDKGMLYVLNGCKKMRKLEIRDSPFGNAALLADVGRYETMRSLWMSSCEVTLGGCKRLAQNSPRLNVEIINE 537          
BLAST of FC932587 vs. ExPASy Swiss-Prot
Match: TIR1A_ORYSJ (Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica GN=Os05g0150500 PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.059e-72
Identity = 128/226 (56.64%), Postives = 165/226 (73.01%), Query Frame = 3
Query:    9 LKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEP 686
            L++LWV+D +ED GL  V SSC  L+ELRVFP+DPF       +TE G + VS  CP L+ VLYFC+ MTN A+ TI +N PNFTCFRLCI+ P  PDY+T EP+D  F A+V +C  L+RLS+SGLLTDL F+ IG +A  LE+LS+AFAG+SD G+  +L GC  L+K EIRDCPFGD  LL+   K E+MRSLWMS+C +T+  C+ LA K PRL+VE++ +P
Sbjct:  330 LQQLWVMDLIEDHGLAVVASSCNKLQELRVFPSDPFGAGF---LTERGLVDVSASCPMLESVLYFCRRMTNEALITIAKNRPNFTCFRLCILEPHTPDYITREPLDAGFSAIVESCRGLRRLSISGLLTDLVFKSIGAHADRLEMLSIAFAGNSDLGLHYILSGCKSLKKLEIRDCPFGDKPLLANAAKLETMRSLWMSSCLLTLGACRQLARKMPRLSVEIMNDP 552          
BLAST of FC932587 vs. ExPASy Swiss-Prot
Match: TIRC_ORYSJ (Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica GN=Os11g0515500 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 8.900e-72
Identity = 130/223 (58.30%), Postives = 168/223 (75.34%), Query Frame = 3
Query:    9 LKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVI 677
            L++LWVLD + D GL+ V SSC  L+ELRVFPA+      T  VTE G +A+S GC +LQ VLYFCQ MTN+A+ T+ +NCP FT FRLC+++PG  D VT +P+DE +GA+V++C  L+RL LSGLLTD  F YIG YA+ LE+LSVAFAG +D GM  VL GC  L+K EIRD PFGD+ALL+G+ + E+MRSLW+S+CNVT+ GCK LA+    LN+EV+
Sbjct:  307 LQQLWVLDHIGDEGLKIVASSCIQLQELRVFPANANARAST--VTEEGLVAISAGCNKLQSVLYFCQRMTNSALITVAKNCPRFTSFRLCVLDPGSADAVTGQPLDEGYGAIVQSCKGLRRLCLSGLLTDTVFLYIGMYAERLEMLSVAFAGDTDDGMTYVLNGCKNLKKLEIRDSPFGDSALLAGMHQYEAMRSLWLSSCNVTLGGCKSLAASMANLNIEVM 527          
BLAST of FC932587 vs. ExPASy Swiss-Prot
Match: GRH1_ARATH (GRR1-like protein 1 OS=Arabidopsis thaliana GN=GRH1 PE=1 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.134e-69
Identity = 126/225 (56.00%), Postives = 161/225 (71.56%), Query Frame = 3
Query:    9 LKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKE 683
            L++LWV+D +ED+GLEAV S C  L ELRVFP++P  +     +TE G + VS GC +L+ VLYFC   TNAA+ TI R  PN  CFRLC++ P  PDY TNEP+D+ F A+   C +L+RLS+SGLL+D  F+YIG++AK + +LS+AFAG SD  +  +L GC  L+K EIRDCPFGD ALL    K E+MRSLWMS+C V+   CKLL+ K PRLNVEVI E
Sbjct:  312 LQKLWVMDLIEDKGLEAVASYCKELRELRVFPSEPDLDATNIPLTEQGLVFVSKGCRKLESVLYFCVQFTNAALFTIARKRPNLKCFRLCVIEPFAPDYKTNEPLDKGFKAIAEGCRDLRRLSVSGLLSDKAFKYIGKHAKKVRMLSIAFAGDSDLMLHHLLSGCESLKKLEIRDCPFGDTALLEHAAKLETMRSLWMSSCFVSFGACKLLSQKMPRLNVEVIDE 536          
BLAST of FC932587 vs. ExPASy Swiss-Prot
Match: TIR1L_ARATH (Transport inhibitor response 1-like protein OS=Arabidopsis thaliana GN=At5g49980 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.522e-63
Identity = 119/223 (53.36%), Postives = 155/223 (69.51%), Query Frame = 3
Query:    9 LKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVI 677
            L+  W LD++ D GL+AV ++C  L ELR+FP DP  E+    V+E G  A+S GC +L+ +LYFCQ MTNAAV  +  NCP  T FRLCIM   +PD+VT +PMDE FGA+V+ C  L RL++SGLLTD  F Y+G+Y K +  LSVAFAG SD  ++ VL GCP+L+K EIRD PFGD AL SG+ +  +MR +WMSAC+++   CK +A   P L VEVI
Sbjct:  363 LQVFWALDSICDEGLQAVAATCKELRELRIFPFDP-REDSEGPVSELGLQAISEGCRKLESILYFCQRMTNAAVIAMSENCPELTVFRLCIMGRHRPDHVTGKPMDEGFGAIVKNCKKLTRLAVSGLLTDQAFRYMGEYGKLVRTLSVAFAGDSDMALRHVLEGCPRLQKLEIRDSPFGDVALRSGMHRYYNMRFVWMSACSLSKGCCKDIARAMPNLVVEVI 584          
BLAST of FC932587 vs. ExPASy Swiss-Prot
Match: FBX14_ARATH (F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX14 PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.173e-61
Identity = 111/222 (50.00%), Postives = 152/222 (68.47%), Query Frame = 3
Query:    9 LKRLWVLDTVEDRGLEAVGSSCPLLEELRVFPADPFDEEITYGVTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSLSGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEV 674
            ++  W LD++ D GL+AV ++C  L ELR+FP DP  E+    V+  G  A+S GC +L+ +LYFCQ MTN AV  +  NCP  T FRLCIM   +PD+VT +PMD+ FGA+V+ C  L RL++SGLLTD  F YIG+Y K +  LSVAFAG+SD  ++ VL GCPKL+K EIRD PFGD  L SG+ +  +MR +W+S+C ++  GC+ ++   P + VEV
Sbjct:  363 IRVFWALDSIRDEGLQAVAATCKELRELRIFPFDP-REDSEGPVSGVGLQAISEGCRKLESILYFCQNMTNGAVTAMSENCPQLTVFRLCIMGRHRPDHVTGKPMDDGFGAIVKNCKKLTRLAVSGLLTDEAFSYIGEYGKLIRTLSVAFAGNSDKALRYVLEGCPKLQKLEIRDSPFGDVGLRSGMHRYSNMRFVWLSSCLISRGGCRGVSHALPNVVVEV 583          
BLAST of FC932587 vs. ExPASy Swiss-Prot
Match: COI1_ARATH (Coronatine-insensitive protein 1 OS=Arabidopsis thaliana GN=COI1 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.452e-29
Identity = 77/241 (31.95%), Postives = 129/241 (53.53%), Query Frame = 3
Query:    3 PLLKRLWVLDTVEDRGLEAVGSSCPLLEELRVFP-ADPFDEEITYG-VTEAGFLAVSHGCPRLQYVLYFCQAMTNAAVATIVRNCPNFTCFRLCIMNPGQPDYVTNEPMDEAFGAVVRTCTNLQRLSL---SGLLTDLTFEYIGQYAKNLELLSVAFAGSSDWGMQCVLRGCPKLRKFEIRDCPFGDAALLSGLDKCESMRSLWMSACNVTMDGCKLLASKKPRLNVEVIKEPRVMTIS*Q 710
            P L+ L   + + DRGLE +   C  L+ LR+   AD    E   G V++ G +A++ GC  L+Y+  +   +TN ++ +I     N   FRL +++  + + +T+ P+D    +++  C  L+R +     G LTDL   YIGQY+ N+  + + + G SD G+    RGCP L+K E+R C F + A+ + + K  S+R LW+     +M G  L+   +P  N+E+I   RV  ++ Q
Sbjct:  318 PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD--REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQ 556          
The following BLAST results are available for this feature:
BLAST of FC932587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TIR1B_ORYSJ1.515e-7963.56Transport inhibitor response 1-like protein Os04g0... [more]
TIR1_ARATH2.187e-7863.00Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidop... [more]
AFB2_ARATH5.387e-7760.44Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis tha... [more]
AFB3_ARATH1.242e-7357.52Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis tha... [more]
TIR1A_ORYSJ3.059e-7256.64Transport inhibitor response 1-like protein Os05g0... [more]
TIRC_ORYSJ8.900e-7258.30Transport inhibitor response 1-like protein Os11g0... [more]
GRH1_ARATH4.134e-6956.00GRR1-like protein 1 OS=Arabidopsis thaliana GN=GRH... [more]
TIR1L_ARATH1.522e-6353.36Transport inhibitor response 1-like protein OS=Ara... [more]
FBX14_ARATH3.173e-6150.00F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX... [more]
COI1_ARATH2.452e-2931.95Coronatine-insensitive protein 1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC34210C03EF PostHarveN Citrus clementina cDNA clone C34210C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932587 ID=FC932587; Name=FC932587; organism=Citrus clementina; type=EST; length=721bp
GCCCTCTTCTTAAGCGGCTCTGGGTGCTGGACACAGTAGAAGACAGAGGA
CTGGAGGCAGTAGGTTCCAGTTGTCCATTGCTCGAAGAACTCCGCGTTTT
CCCCGCTGATCCCTTTGATGAGGAAATTACTTACGGGGTTACAGAAGCAG
GGTTTTTAGCAGTGTCCCATGGCTGTCCGAGACTTCAGTACGTTCTGTAC
TTTTGTCAGGCGATGACCAATGCTGCTGTGGCAACAATTGTGCGGAACTG
CCCCAATTTCACCTGCTTCCGCCTTTGTATAATGAATCCGGGACAGCCAG
ATTACGTGACAAATGAACCCATGGATGAGGCCTTTGGTGCGGTGGTGAGG
ACTTGTACCAACCTTCAAAGGCTTTCACTTTCAGGCCTCTTAACAGACCT
TACATTTGAGTACATTGGCCAGTATGCCAAAAATTTGGAACTCCTGTCGG
TAGCTTTTGCTGGGAGCAGTGATTGGGGTATGCAATGTGTGCTAAGAGGT
TGTCCAAAGCTGAGGAAATTTGAGATAAGGGATTGCCCATTTGGGGACGC
AGCTCTACTCTCAGGATTGGACAAGTGTGAATCAATGAGGTCACTTTGGA
TGTCAGCATGCAATGTGACAATGGATGGTTGTAAGTTATTGGCAAGCAAA
AAGCCAAGGTTGAATGTTGAGGTGATTAAGGAGCCGAGAGTGATGACNAT
CAGCTGACAGGTTTATGTTTA
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