FC932588

Overview
NameFC932588
Unique NameFC932588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length753
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932588 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 3.504e-66
Identity = 125/186 (67.20%), Postives = 151/186 (81.18%), Query Frame = 3
Query:  123 NMDIEEEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSE 680
            +M  EE++RLKYL+FVQ A +  LL F  +Y  AK KSGPLKPGVESVEG VK VVGPVY+KYH +P+E+LK++D+KVD SVT+LD RVPPV+KQV AQA+SAAQ+AP+VAR++ASEV+ AGV  TASGMAKSVY+KYEPAAKELY+ YEPKAEQ AVSAW+KLNQ+PLF            +CSE
Sbjct:   13 DMTKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPKAEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSE 198          

HSP 2 Score: 23.0978 bits (48), Expect = 3.504e-66
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  679 KIHQTVVSAADKGYK 723
            K + TVV AA+KGY+
Sbjct:  199 KYNDTVVKAAEKGYR 213          
BLAST of FC932588 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.129e-54
Identity = 104/181 (57.46%), Postives = 135/181 (74.59%), Query Frame = 3
Query:  138 EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSE 680
            EE+RLKYL+FVQVA I+V++CF +LY YAK  SGPLKPGV++VEGTVK V+GPVY+K++ +P ELL F+DRKV+ S+ +L+  VP ++K+   QA++ AQ AP +A +VASEV+  GV  TA  + K+VY+K EP AKEL SKYEP AEQYAVSAWR LN++PLF            Y SE
Sbjct:   16 EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSE 196          
BLAST of FC932588 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 4.097e-46
Identity = 95/180 (52.78%), Postives = 129/180 (71.67%), Query Frame = 3
Query:   99 EKNVPSQQNMDIE---EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPL 629
            E+ V  ++  ++E   EE+RL+YLEFVQ A   VL+     Y YAK  +GPL+PGV+ VEGTVK VVGPVYD++HG+P++LLKF+DRKV ESV +LD RVPPV+K+           AP +ARS A+EV+ AG+ GTA+G+AKS   + EP A++LY++YEP AE+ A  AW  LN++PL
Sbjct:   15 EEEVTVEKTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKE-----------APGLARSAAAEVRQAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPL 183          
BLAST of FC932588 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.097e-46
Identity = 95/180 (52.78%), Postives = 129/180 (71.67%), Query Frame = 3
Query:   99 EKNVPSQQNMDIE---EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPL 629
            E+ V  ++  ++E   EE+RL+YLEFVQ A   VL+     Y YAK  +GPL+PGV+ VEGTVK VVGPVYD++HG+P++LLKF+DRKV ESV +LD RVPPV+K+           AP +ARS A+EV+ AG+ GTA+G+AKS   + EP A++LY++YEP AE+ A  AW  LN++PL
Sbjct:   15 EEEVTVEKTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKE-----------APGLARSAAAEVRQAGLVGTATGLAKSAIARAEPRARDLYTRYEPVAERKAAEAWAALNRLPL 183          
BLAST of FC932588 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.550e-35
Identity = 86/181 (47.51%), Postives = 106/181 (58.56%), Query Frame = 3
Query:  138 EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSE 680
            EE+RLKYL+FV+ A ++ +  F  LY YAK  SGPLKPGV+++E  VK VV PVY     +P+E +KF+D+ VD SVT LD  VPPV+KQV AQ  S AQ AP +   VAS V   GV               +  AK LY+  EPKAEQYAV  WR LN++PL             Y SE
Sbjct:    6 EEERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY----IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGV---------------QEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSE 167          
BLAST of FC932588 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.367e-32
Identity = 75/182 (41.21%), Postives = 106/182 (58.24%), Query Frame = 3
Query:  135 EEEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSE 680
            ++E +LK+LEF+QVA ++   CF  LY  AK  +GPLK GVE++E  V+ V+ P+Y+K+H +P +LL F+DRKVD+    ++  VP ++KQ  +QAL           +VA+EV+  GV  T   +A+SV  KYEPA           AE YA + WR LNQ+PLF            Y SE
Sbjct:   36 DDEMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQAL-----------TVATEVQRTGVVDTTKSIARSVRDKYEPA-----------AEYYAATLWRLLNQLPLFPEVAHLVIPTAFYWSE 195          
BLAST of FC932588 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.484e-29
Identity = 76/157 (48.41%), Postives = 92/157 (58.60%), Query Frame = 3
Query:  210 LYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPKAEQYAVSAWRKLNQMPLFXXXXXXXXXXXXYCSE 680
            LY YAK ++GPLKPGV +VE  VK VV PVYD++H +P+ELLK+ DRKV E    LD  VP  +K+V +Q           ARSV SEV+  GV+                 AK +YSKYEP AEQ AVSAWRKLNQ+PLF            YC+E
Sbjct:    6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKYADRKVGE----LDRHVPSNVKKVSSQ-----------ARSVVSEVRRDGVS---------------TFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTE 132          
BLAST of FC932588 vs. ExPASy Swiss-Prot
Match: REF_HEVBR (Rubber elongation factor protein OS=Hevea brasiliensis PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.568e-21
Identity = 57/129 (44.19%), Postives = 84/129 (65.12%), Query Frame = 3
Query:   90 MAEEKNVPSQQNMDIEEEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEV 476
            MAE+++  +QQ     + + LKYL FVQ A  + +  F N+Y +AK KSGPL+PGV+ +EG VKNV  P+Y+++  +P   LKF+D  V  SVT +D  +PP++K    Q +SA + AP  ARS+AS +
Sbjct:    1 MAEDED--NQQG----QGEGLKYLGFVQDAATYAVTTFSNVYLFAKDKSGPLQPGVDIIEGPVKNVAVPLYNRFSYIPNGALKFVDSTVVASVTIIDRSLPPIVKDASIQVVSAIRAAPEAARSLASSL 123          
BLAST of FC932588 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.047e-21
Identity = 67/163 (41.10%), Postives = 81/163 (49.69%), Query Frame = 3
Query:  138 EEQRLKYLEFVQVATIHVLLCFHNLYGYAKAKSGPLKPGVESVEGTVKNVVGPVYDKYHGLPIELLKFIDRKVDESVTKLDCRVPPVLKQVPAQALSAAQMAPVVARSVASEVKTAGVAGTASGMAKSVYTKYEPAAKELYSKYEPK--AEQYAVSAWRKLNQ 620
            +E  LK+L FV++ATIH+L    NLY YAK  SGPLK  VE VEG V  VV PVY K+  +P  LL F+D KV E   K D   PP+ K+V  QA      A   A+S   E +T G                 P A   Y+  E K      +V  W KLNQ
Sbjct:    9 KEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGG-----------------PKAAFNYAATEYKFFVVTNSVKVWAKLNQ 154          
The following BLAST results are available for this feature:
BLAST of FC932588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
Y3550_ARATH3.504e-6667.20REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
SRP_VITRI3.129e-5457.46Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y5513_ORYSJ4.097e-4652.78REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI4.097e-4652.78REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
SRPP_HEVBR5.550e-3547.51Small rubber particle protein OS=Hevea brasiliensi... [more]
Y2778_ARATH3.367e-3241.21REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
SRP_PHAVU3.484e-2948.41Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
REF_HEVBR1.568e-2144.19Rubber elongation factor protein OS=Hevea brasilie... [more]
Y1736_ARATH2.047e-2141.10REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionC34210C04EF PostHarveN Citrus clementina cDNA clone C34210C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932588 ID=FC932588; Name=FC932588; organism=Citrus clementina; type=EST; length=753bp
GCCATTAAAATCTTTCATCGATTTCCTCGAACAAGTTAAAGGCTTCTTCT
ACGACGTCGTTTCACAGTCATTCGTCAATCATCATCACCATGGCCGAAGA
GAAGAACGTGCCGTCCCAACAAAACATGGATATTGAGGAGGAGCAGAGGC
TGAAATATTTGGAGTTTGTGCAAGTTGCCACAATCCATGTGTTGCTGTGC
TTCCATAATCTATATGGTTATGCTAAAGCCAAGTCCGGACCATTGAAACC
TGGTGTGGAGTCCGTTGAGGGGACTGTCAAGAATGTGGTTGGACCTGTTT
ATGATAAGTATCATGGTCTCCCGATTGAGCTCCTTAAGTTTATTGATCGC
AAGGTGGATGAGTCTGTGACCAAGCTGGACTGCCGTGTGCCTCCAGTCCT
CAAGCAAGTCCCTGCCCAAGCTCTCTCCGCTGCTCAAATGGCTCCCGTAG
TGGCACGATCCGTGGCTTCTGAAGTGAAGACTGCCGGTGTAGCCGGCACT
GCCTCAGGAATGGCAAAATCCGTTTACACCAAGTACGAGCCAGCAGCCAA
GGAACTTTACTCCAAGTACGAACCAAAAGCGGAGCAATATGCTGTGTCAG
CTTGGCGCAAGCTCAATCAGATGCCACTATTCCCTCAAGTAGCTCAAGTT
GTTGTGCCAACTGCTGCCTATTGTTCCGAAAATACACCAAACAGTGGTGA
GCGCTGCAGATAAAGGGTACAAGTCTCTCATATTGCCTTGGTCCTACTGA
AGA
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