FC932624

Overview
NameFC932624
Unique NameFC932624
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: PROSC_HUMAN (Proline synthetase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.627e-40
Identity = 96/204 (47.06%), Postives = 132/204 (64.71%), Query Frame = 3
Query:  114 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQ-----LPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGNTEEHV 692
            LR+V +RV QA  R  R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+      L  +++WHFIG+LQ   V  L+A VPNL M+E+VD+ K+A ++N   +  G  + LKV+VQ+NTSGEESK G+ PS  + +V+H++  CPNLEF GLMTIG    D +  P  +F+ L   R E+CK L    + V
Sbjct:   17 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSLCPEIKWHFIGHLQKQNVNKLMA-VPNLFMLETVDSVKLADKVNSSWQRKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQV 219          

HSP 2 Score: 21.557 bits (44), Expect = 3.627e-40
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  692 DLSMGMSGDFE 724
            +LSMGMS DF+
Sbjct:  220 ELSMGMSADFQ 230          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: PROSC_PONAB (Proline synthetase co-transcribed bacterial homolog protein OS=Pongo abelii GN=PROSC PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.127e-40
Identity = 95/204 (46.57%), Postives = 132/204 (64.71%), Query Frame = 3
Query:  114 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQ-----LPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGNTEEHV 692
            LR+V +RV QA     R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+      L  +++WHFIG+LQ   V  L+A VPNL ++E+VD+ K+AG++N   +  G  + LKV+VQ+NTSGEESK G+ PS  + +V+H++  CPNLEF GLMTIG    D +  P  +F+ L   R E+CK L    + V
Sbjct:   17 LRAVNERVQQAVALRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSLGPEIKWHFIGHLQKQNVNKLMA-VPNLFVLETVDSVKLAGKVNSSWQKKGSPERLKVMVQINTSGEESKHGLPPSETIAIVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQV 219          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: PROSC_MOUSE (Proline synthetase co-transcribed bacterial homolog protein OS=Mus musculus GN=Prosc PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.557e-39
Identity = 94/204 (46.08%), Postives = 134/204 (65.69%), Query Frame = 3
Query:  114 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP-----DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMG-RKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGNTEEHV 692
            LR+V +RV Q+  R  R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+         +++WHFIG+LQ   V  L+A VPNL+M+E+VD+ K+A ++N   +  G  +PLKV+VQ+NTSGE+SK G+ PS  + +V+H+  +CP+LEF GLMTIG    D +  P  +F+ L   R E+C+ LG   E V
Sbjct:   17 LRAVNERVQQSVARRPRDLPAIQPRLVAVSKTKPADMVIEAYGHGQRTFGENYVQELLEKASNPKILSSCPEIKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADKVNSSWQKKGPTEPLKVMVQINTSGEDSKHGLLPSETIAVVEHIKASCPSLEFVGLMTIGSFGHDLSQGPNPDFQRLLTLRRELCEKLGIPVEQV 219          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: PROSC_BOVIN (Proline synthetase co-transcribed bacterial homolog protein OS=Bos taurus GN=PROSC PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.655e-39
Identity = 94/204 (46.08%), Postives = 131/204 (64.22%), Query Frame = 3
Query:  114 LRSVIQRVHQAAERSSR--PPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP-----DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGR-KPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGM--PDYTSTPE-NFKTLAKCRSEVCKALGNTEEHV 692
            LR+V +RV QA  R  R  P  + R+VAVSKTKP  ++ + Y  G R FGENYVQE++EKA+         +++WHFIG+LQ   V  L+A VPNL+M+E+VD+ K+A ++N   +  G  + LKV+VQ+NTSGE SK G+ P+    LV+H++  CP+LEF GLMTIG    D +  P  +F+ L   R E+C+ LG   E V
Sbjct:   17 LRAVNERVQQAVARRPRDLPAIQPRLVAVSKTKPADMVIEAYSHGQRTFGENYVQELLEKASNPQILSSCPEIKWHFIGHLQKQNVNKLMA-VPNLSMLETVDSVKLADKVNSAWQKKGSPERLKVMVQINTSGEASKHGLPPAEMAALVEHINAKCPSLEFVGLMTIGSFGHDLSQGPNPDFQVLLSLREELCRKLGAPPEQV 219          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: PROSC_DICDI (Proline synthetase co-transcribed bacterial homolog protein OS=Dictyostelium discoideum GN=prosc PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.132e-38
Identity = 92/203 (45.32%), Postives = 126/203 (62.07%), Query Frame = 3
Query:  114 LRSVIQRVHQAAERSSRPPDR--IRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRL----------NRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHV--SQNCPN-LEFCGLMTIGMPDYTSTPENFKTLAKCRSEVCKAL 671
            L S  + +    E  S   DR  +++VAVSKTKP  +IR +Y+ GHR FGENY+QE+V K+ +L +  +++WHFIG++QSNK K +L  V NL +VE+V+N+KI  +L          N        K L +++QVNTSGEESKSG +P  CL+LVKH     NC N L F GLMTIG P+ T    +FK L  C++ + K L
Sbjct:   10 LISSYKNIKDRVEIISNKFDRHNVKLVAVSKTKPTEMIRILYDKGHRHFGENYIQELVSKSEELSELNEIKWHFIGSIQSNKSK-ILTSVKNLYVVETVENKKILDKLAKSLLNNEENNNNNNNNNNKKLNIMIQVNTSGEESKSGCKPEECLDLVKHCLEDNNCKNSLNFLGLMTIGNPNATPDQPDFKCLVDCKNNISKQL 211          

HSP 2 Score: 21.9422 bits (45), Expect = 1.132e-38
Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  692 DLSMGMSGDFE 724
            +LSMGMS DFE
Sbjct:  219 ELSMGMSHDFE 229          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: Y112_PASMU (UPF0001 protein PM0112 OS=Pasteurella multocida GN=PM0112 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.744e-31
Identity = 81/195 (41.54%), Postives = 116/195 (59.49%), Query Frame = 3
Query:  114 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKA---AQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP--DYTSTPENFKTLAKCRSEVCKALGNTE 683
            L  + Q +  A +++ RP   ++++AVSKTKPV  I Q Y+AG   FGENYVQE VEK    AQ    LEWHFIG LQSNK K +     +   ++++D +KIA RLN       +KPL VL+Q+N S E+SKSG++P+  L+L K + QN P+L   GLM I  P  D  +  + F  +     ++ +AL + +
Sbjct:    7 LAQIQQNIQHAVQQAKRPESAVKLLAVSKTKPVEDIYQAYQAGQTAFGENYVQEGVEKIQYFAQKNIPLEWHFIGPLQSNKTKLV---AEHFDWMQTLDRKKIADRLNEQ-RPHYKKPLNVLIQINISDEDSKSGIQPNEMLDLAKQI-QNLPHLCLRGLMAIPAPTDDLATQEQAFTQMHSLFEQLKQALPDAQ 196          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: YKC9_SCHPO (UPF0001 protein C644.09 OS=Schizosaccharomyces pombe GN=SPAC644.09 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.253e-30
Identity = 77/169 (45.56%), Postives = 105/169 (62.13%), Query Frame = 3
Query:  177 IRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMPDYTSTPE---NFKTLAKCRSEVCKALG 674
            + +VAVSK  PV  + + Y AG R FGENY+QE ++K   +PDD++WHFIG+LQS+K K  +A V NL  +E++D EK A  +N   E + + PL V +QVNTSGEE+K GV PS  LEL K V Q+   L   GLMTIG    +   +   +F+ L+  R  +   LG
Sbjct:   24 VLLVAVSKFHPVETLMEAYNAGQRHFGENYMQEFLKKVELMPDDVQWHFIGSLQSSKCKK-IASVKNLYSIETIDTEKKARLVNSAREAL-QLPLNVYIQVNTSGEENKGGVTPSKVLELCKQV-QDMKYLRLKGLMTIGSISNSQLSDHNPDFQVLSDLRESLQNELG 189          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: Y090_HAEIN (UPF0001 protein HI0090 OS=Haemophilus influenzae GN=HI0090 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.562e-30
Identity = 79/195 (40.51%), Postives = 115/195 (58.97%), Query Frame = 3
Query:  114 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD---DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTIGMP-DYTSTPEN-FKTLAKCRSEVCKALGNTE 683
            L  + Q++  A +  +R  + ++++AVSKTKP+S I   Y+AG   FGENYVQE VEK         +LEWHFIG LQSNK + +     +   ++++D  KIA RLN    T  + PL VL+Q+N S EESKSG++P   L L KH+ +N P+L   GLM I  P D  +  EN F+ + +   ++ + L N +
Sbjct:    7 LNLIQQKIETACKEENRNQNTVKLLAVSKTKPISAILSAYQAGQTAFGENYVQEGVEKIQYFESQGINLEWHFIGPLQSNKTRLV---AEHFDWMQTLDRAKIADRLNEQRPT-NKAPLNVLIQINISDEESKSGIQPEEMLTLAKHI-ENLPHLCLRGLMAIPAPTDNIAEQENAFRKMLELFEQLKQVLPNQQ 196          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: Y461_VIBCH (UPF0001 protein VC_0461 OS=Vibrio cholerae GN=VC_0461 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.109e-28
Identity = 76/191 (39.79%), Postives = 111/191 (58.12%), Query Frame = 3
Query:  114 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDD-----LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTI--GMPDYTSTPENFKTLAKCRSEVCK 665
            +  +  ++  A ++  R    ++++AVSKTKPV  I +  +AG R FGENYVQE V+K     +      LEWHFIG LQSNK + +     +   V ++D EKIA RL+     +   PL+VL+QVNTSGE SKSG+EP     L + +S+  PNL   GLM+I   +PDY +    F  LA+ + ++ +
Sbjct:    8 IEHITAQIESAQQKCGRARSSVQLLAVSKTKPVEAILEATQAGQRYFGENYVQEGVDKIRYFAEHHPQLALEWHFIGPLQSNKTRLV---AEHFDWVHTIDREKIALRLSEQ-RPVNMPPLQVLIQVNTSGEASKSGIEPQQLFTLAELISR-LPNLTLRGLMSIPENVPDYPAQLAAFTQLAELQQQLAQ 193          
BLAST of FC932624 vs. ExPASy Swiss-Prot
Match: YPI1_VIBAL (UPF0001 protein in pilT-proC intergenic region OS=Vibrio alginolyticus PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.754e-28
Identity = 78/183 (42.62%), Postives = 108/183 (59.02%), Query Frame = 3
Query:  114 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEK----AAQLPDD-LEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVSQNCPNLEFCGLMTI--GMPDYTSTPENFKTLA 641
            +  +  ++    ++  R P+ ++++AVSKTKPV  I + Y+AG   FGENYVQE V K    A   PD+ +EWHFIG +QSNK + +     +   V ++D  KIA RLN        KPL+VL+QVNTSGE SKSGV  +   EL + +S+  PNL   GLM+I   + DY S    F+ LA
Sbjct:    8 IEHITSQIRYDEQKCGRTPESVQLLAVSKTKPVEAILEAYQAGQTAFGENYVQEGVSKVQHFAEHYPDNRIEWHFIGPIQSNKSRLV---AEHFDWVHTIDRTKIAQRLNDQ-RPSELKPLQVLIQVNTSGEASKSGVTEAEVFELAELISR-LPNLTLRGLMSIPANVSDYESQLHEFQKLA 185          
The following BLAST results are available for this feature:
BLAST of FC932624 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PROSC_HUMAN3.627e-4047.06Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_PONAB9.127e-4046.57Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_MOUSE1.557e-3946.08Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_BOVIN2.655e-3946.08Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_DICDI1.132e-3845.32Proline synthetase co-transcribed bacterial homolo... [more]
Y112_PASMU7.744e-3141.54UPF0001 protein PM0112 OS=Pasteurella multocida GN... [more]
YKC9_SCHPO2.253e-3045.56UPF0001 protein C644.09 OS=Schizosaccharomyces pom... [more]
Y090_HAEIN8.562e-3040.51UPF0001 protein HI0090 OS=Haemophilus influenzae G... [more]
Y461_VIBCH2.109e-2839.79UPF0001 protein VC_0461 OS=Vibrio cholerae GN=VC_0... [more]
YPI1_VIBAL2.754e-2842.62UPF0001 protein in pilT-proC intergenic region OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34210F04EF PostHarveN Citrus clementina cDNA clone C34210F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932624 ID=FC932624; Name=FC932624; organism=Citrus clementina; type=EST; length=726bp
GGAATCAGGAACATGAAGAAGAGCGCAAGAGGAGAGAGAATCATATCAAC
GAACGAGTAGAAGCAGAAACCATGGCTGCGTCTGCCGCCACAGATGGCGT
TGCAGCGACGGCGCTTCGGTCCGTGATCCAACGGGTCCACCAAGCCGCCG
AGAGATCCAGTCGCCCGCCGGACCGGATTCGAATCGTCGCTGTCAGCAAA
ACCAAACCGGTCTCAGTAATCCGTCAGGTTTATGAGGCCGGTCACCGATG
TTTCGGTGAAAACTACGTTCAAGAAATAGTGGAAAAGGCGGCTCAGCTTC
CAGATGATCTAGAATGGCATTTCATTGGGAACCTGCAGAGCAATAAAGTG
AAACCTTTATTGGCTGGTGTGCCTAACCTGGCAATGGTAGAAAGTGTGGA
CAACGAGAAGATTGCAGGTCGTCTTAATCGTATGGTTGAAACCATGGGAA
GGAAGCCTTTAAAAGTCTTGGTTCAAGTGAATACCAGTGGAGAAGAATCG
AAATCTGGAGTTGAGCCTTCAGGGTGTCTGGAACTTGTGAAACATGTTAG
TCAAAACTGTCCGAATCTTGAGTTTTGTGGCCTAATGACAATTGGGATGC
CAGATTACACATCGACCCCGGAGAACTTCAAGACATTAGCAAAATGCAGA
AGTGAGGTATGCAAGGCTCTTGGAAATACAGAAGAGCATGTGATCTGTCT
ATGGGAATGTCTGGTGACTTCGAGCT
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