FC932642

Overview
NameFC932642
Unique NameFC932642
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932642_ssr58 microsatellite FC932642_ssr58:58..69. BLAST: Citrus ESTs to Populus V2 proteins
Ccv1_Contig15545 contig Ccv1_Contig15545:1..702. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of FC932642 vs. ExPASy Swiss-Prot
Match: NLAL1_ARATH (Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana GN=At3g03920 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.036e-37
Identity = 72/85 (84.71%), Postives = 81/85 (95.29%), Query Frame = 1
Query:  412 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSK 666
            EGPP+EVVEV++F+HACEGDAVTKL+ EKIP+FNAPIYL+NKTQIGKVDEIFGPINES FS+KMMEGIVATSYS GDKF+IDP K
Sbjct:   52 EGPPSEVVEVATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIVATSYSPGDKFFIDPYK 136          
BLAST of FC932642 vs. ExPASy Swiss-Prot
Match: NLAL2_ARATH (H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana GN=At5g18180 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.797e-35
Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 1
Query:  412 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSK 666
            EGPP+EVVEV++FLHACEGDAV KL+N KIP+FNAPIYLQNKTQIG+VDEIFGPINES FS+KM EGIVATSYS GDKF+I P K
Sbjct:   39 EGPPSEVVEVATFLHACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSYSQGDKFFISPEK 123          
BLAST of FC932642 vs. ExPASy Swiss-Prot
Match: GAR1_CANGA (H/ACA ribonucleoprotein complex subunit 1 OS=Candida glabrata GN=GAR1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.914e-27
Identity = 53/85 (62.35%), Postives = 66/85 (77.65%), Query Frame = 1
Query:  412 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSK 666
            +GPP  V+E+  F+H CEGD V +  N K+PYFNAPIYL+NKTQ+GKVDEI GP+NE YF++K  EG+ ATS+  GDKFYI P K
Sbjct:   32 QGPPDTVLEMGEFMHPCEGDVVCRSINTKVPYFNAPIYLENKTQVGKVDEILGPLNEVYFTIKCGEGVQATSFKEGDKFYIAPDK 116          
BLAST of FC932642 vs. ExPASy Swiss-Prot
Match: GAR1_KLULA (H/ACA ribonucleoprotein complex subunit 1 OS=Kluyveromyces lactis GN=GAR1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.970e-27
Identity = 54/85 (63.53%), Postives = 67/85 (78.82%), Query Frame = 1
Query:  412 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSK 666
            +GPP  V+E+ +FLH CEGD V +  N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE +F+VK  +G+ A S+S GDKFYI P K
Sbjct:   29 QGPPDSVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTVKCSDGVKAESFSEGDKFYIAPDK 113          
BLAST of FC932642 vs. ExPASy Swiss-Prot
Match: GAR1_COCIM (H/ACA ribonucleoprotein complex subunit 1 OS=Coccidioides immitis GN=GAR1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.491e-27
Identity = 54/84 (64.29%), Postives = 66/84 (78.57%), Query Frame = 1
Query:  415 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSK 666
            GPP  V+E+ SF+HACEG+ V +  N KIPYFNAPIYL+NKT +GKVDE+ GPIN+ YF++K  EGIVATS+  GDKFYI   K
Sbjct:   35 GPPTTVLEMGSFMHACEGEMVCESINPKIPYFNAPIYLENKTPVGKVDEVLGPINQVYFTIKPQEGIVATSFKPGDKFYIGGDK 118          
BLAST of FC932642 vs. ExPASy Swiss-Prot
Match: GAR1_NEOFI (H/ACA ribonucleoprotein complex subunit 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=gar1 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.477e-27
Identity = 54/84 (64.29%), Postives = 67/84 (79.76%), Query Frame = 1
Query:  415 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSK 666
            GPPA+V+E+ +F+HACEG+ V +  N KIPYFNAPIYL+NKT IGKVDE+ GPIN+ YF++K  EGIVATS+  GDK YI   K
Sbjct:   35 GPPAQVLEMGTFMHACEGEMVCESVNPKIPYFNAPIYLENKTPIGKVDEVLGPINQVYFTIKPQEGIVATSFKPGDKVYIGGDK 118          
BLAST of FC932642 vs. ExPASy Swiss-Prot
Match: GAR1_CHAGB (H/ACA ribonucleoprotein complex subunit 1 OS=Chaetomium globosum GN=GAR1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.221e-26
Identity = 52/84 (61.90%), Postives = 66/84 (78.57%), Query Frame = 1
Query:  415 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSK 666
            GPPA V+E+  F+HACEG+ V + TN K+P+FNAPIYL+NKT +GKVDE+ GPIN+ YF++K  EGI ATS+  GDKFYI   K
Sbjct:   32 GPPATVLEMGKFIHACEGEMVIESTNPKVPHFNAPIYLENKTAVGKVDEVLGPINQVYFTIKPSEGIQATSFKYGDKFYIAGEK 115          
BLAST of FC932642 vs. ExPASy Swiss-Prot
Match: GAR1_YEAST (H/ACA ribonucleoprotein complex subunit 1 OS=Saccharomyces cerevisiae GN=GAR1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.177e-26
Identity = 52/85 (61.18%), Postives = 66/85 (77.65%), Query Frame = 1
Query:  412 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSK 666
            +GPP  V+E+ +FLH CEGD V +  N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE +F++K  +G+ ATS+  GDKFYI   K
Sbjct:   31 QGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTIKCGDGVQATSFKEGDKFYIAADK 115          
BLAST of FC932642 vs. ExPASy Swiss-Prot
Match: GAR1_SCHPO (H/ACA ribonucleoprotein complex subunit 1 OS=Schizosaccharomyces pombe GN=gar1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.373e-26
Identity = 50/84 (59.52%), Postives = 68/84 (80.95%), Query Frame = 1
Query:  415 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSK 666
            GPP +V+E+  F+H CEG+ V + TN KIPYFNAPIYL+NK+QIGK+DE+FGP+N+ YF+VK  EGIV++S+ +GDK Y+   K
Sbjct:   25 GPPDQVIELGLFMHDCEGEMVCQSTNVKIPYFNAPIYLENKSQIGKIDEVFGPMNQVYFTVKPSEGIVSSSFKVGDKVYLSGDK 108          
BLAST of FC932642 vs. ExPASy Swiss-Prot
Match: GAR1_ASHGO (H/ACA ribonucleoprotein complex subunit 1 OS=Ashbya gossypii GN=GAR1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.373e-26
Identity = 51/85 (60.00%), Postives = 66/85 (77.65%), Query Frame = 1
Query:  412 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSYSLGDKFYIDPSK 666
            +GPP  VVE+ +F+H CEGD V +  N KIPYFNA IYL+NKT++GKVDEI GP+NE +F++K  EG+ A+S+  GDKFYI P K
Sbjct:   32 QGPPDSVVEMGAFMHDCEGDIVCRSINTKIPYFNAMIYLENKTEVGKVDEILGPLNEVFFTIKCAEGVKASSFKDGDKFYISPEK 116          
The following BLAST results are available for this feature:
BLAST of FC932642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
NLAL1_ARATH9.036e-3784.71Putative H/ACA ribonucleoprotein complex subunit 1... [more]
NLAL2_ARATH3.797e-3582.35H/ACA ribonucleoprotein complex subunit 1-like pro... [more]
GAR1_CANGA2.914e-2762.35H/ACA ribonucleoprotein complex subunit 1 OS=Candi... [more]
GAR1_KLULA4.970e-2763.53H/ACA ribonucleoprotein complex subunit 1 OS=Kluyv... [more]
GAR1_COCIM6.491e-2764.29H/ACA ribonucleoprotein complex subunit 1 OS=Cocci... [more]
GAR1_NEOFI8.477e-2764.29H/ACA ribonucleoprotein complex subunit 1 OS=Neosa... [more]
GAR1_CHAGB3.221e-2661.90H/ACA ribonucleoprotein complex subunit 1 OS=Chaet... [more]
GAR1_YEAST7.177e-2661.18H/ACA ribonucleoprotein complex subunit 1 OS=Sacch... [more]
GAR1_SCHPO9.373e-2659.52H/ACA ribonucleoprotein complex subunit 1 OS=Schiz... [more]
GAR1_ASHGO9.373e-2660.00H/ACA ribonucleoprotein complex subunit 1 OS=Ashby... [more]

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Properties
Property NameValue
Genbank descriptionC34210G10EF PostHarveN Citrus clementina cDNA clone C34210G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932642 ID=FC932642; Name=FC932642; organism=Citrus clementina; type=EST; length=702bp
GTCCTTCGTTCCATTTTTAATATCTTATTCTCATCTATTTGAGCTTAATT
CTATTAAAAATAAATAAATTCGAACACACAGTGTTTTAATGTTTTATGCA
ATTTGTAAAACAAATCCAAATGAAATAAGAGTATGGGATAGTATGGTCAT
TTGGCAGGCAACGAGCCACTTCAAAACCCTAAACTAAAACCCTAAAGCTA
ACGCAGACGGAGTCGCGCGCTTGTAATAACACTAAGCCCCTTGTCGTTTC
TCCTAAAATCAACCCAAACCCAGATTAAAAAAATGAGACCCCCGAGAGGA
GGAGGCGGTTTCAGGGGAGGAAGAGACGGAGGCCGCGGTGGAAGGGGCGG
CGGCCGTTTTGGTGGAGGCGGCCGTGGCGGTGGCGGTCGAGGTGGTTTTG
GTTTCCGTGACGAAGGACCTCCTGCCGAAGTTGTTGAGGTATCGTCGTTT
CTTCATGCGTGTGAAGGTGATGCTGTGACAAAGCTCACCAATGAGAAAAT
ACCTTACTTTAATGCTCCAATCTATCTGCAAAACAAGACCCAGATAGGGA
AAGTTGATGAAATTTTTGGTCCCATTAATGAATCTTATTTTTCGGTCAAA
ATGATGGAAGGTATTGTTGCAACTTCATATTCACTGGGTGATAAGTTCTA
CATTGACCCAAGCAAGCTGTTGCCTCTTGCTAGATTTCTTCCCGCACCAA
GG
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