GH733292
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_ARATH (DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP1 PE=1 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 4.346e-35 Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = -1 Query: 25 DRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 291 DRAKKGKPPL + SDGK+ R+L P A E+K+AQ +AKIEKMERDM TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF KSLL Sbjct: 811 DRAKKGKPPL-EGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFTKSLL 898
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_DAUCA (DNA topoisomerase 1 OS=Daucus carota GN=TOP1 PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 1.447e-30 Identity = 72/111 (64.86%), Postives = 80/111 (72.07%), Query Frame = -1 Query: 22 RAKKGKPPLMKDSDGKRKRNLAPE----------------------ALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLA 288 R KGKPPL K+SDGK KRNL + ++ +K+AQTN KIEKMERD +TKEDLKTVALGTSKINYLDPRITVAWCKRH+VPIEKIFNKSLLA Sbjct: 667 RVNKGKPPL-KNSDGKPKRNLNLKRYKGKLLKLIQKLRKWSETRRLSVTKKIAQTNTKIEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRHDVPIEKIFNKSLLA 776
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_DICDI (DNA topoisomerase 1 OS=Dictyostelium discoideum GN=top1 PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.007e-15 Identity = 41/73 (56.16%), Postives = 55/73 (75.34%), Query Frame = -1 Query: 28 KRNLAPEA---LERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 237 K P+A ++ K+A+ +I+K E K++LKTVALGTSKINYLDPRITVAWCK+++VP++KIF KSL Sbjct: 806 KSRTLPDAKGKIKEKIAKYEEQIKKQEILKTGKDELKTVALGTSKINYLDPRITVAWCKKNKVPVDKIFTKSL 878
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_DROME (DNA topoisomerase 1 OS=Drosophila melanogaster GN=Top1 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.898e-14 Identity = 32/59 (54.24%), Postives = 49/59 (83.05%), Query Frame = -1 Query: 31 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 207 +++ + +++K+E +++ KT+ALGTSK+NYLDPRI+VAWCK+H+VPIEKIFNK+ Sbjct: 896 KQLERLRDQLKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKHDVPIEKIFNKT 954
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_XENLA (DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.421e-14 Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = -1 Query: 13 KKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLANLL 282 K K D K K+ + E+ ++ + + ++ K+E +E+ K +ALGTSK+NYLDPRI+VAWCK++ VPIEKI+NK+ NLL Sbjct: 722 KSAKADAKVRRDEKTKKLV--ESKKKAVQRIEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKYGVPIEKIYNKTQRKNLL 809
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_RAT (DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.230e-13 Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = -1 Query: 31 RAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 288 ++ K +MKD+ K+ +A++R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ Sbjct: 668 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKT 749
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_MOUSE (DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 1.230e-13 Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = -1 Query: 31 RAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 288 ++ K +MKD+ K+ +A++R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ Sbjct: 668 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKT 749
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_HUMAN (DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 1.230e-13 Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = -1 Query: 31 RAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 288 ++ K +MKD+ K+ +A++R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ Sbjct: 666 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKT 747
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_CRIGR (DNA topoisomerase 1 OS=Cricetulus griseus GN=TOP1 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.230e-13 Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = -1 Query: 31 RAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 288 ++ K +MKD+ K+ +A++R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ Sbjct: 668 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKT 749
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_CERAE (DNA topoisomerase 1 OS=Cercopithecus aethiops GN=TOP1 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.230e-13 Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = -1 Query: 31 RAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 288 ++ K +MKD+ K+ +A++R Q + K+E +E+ K +ALGTSK+NYLDPRITVAWCK+ VPIEKI+NK+ Sbjct: 668 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKT 749 The following BLAST results are available for this feature:
BLAST of GH733292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
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Sequences
The
following sequences are available for this feature:
EST sequence >GH733292 ID=GH733292; Name=GH733292; organism=Citrus clementina; type=EST; length=306bpback to top |