GH733292

Overview
NameGH733292
Unique NameGH733292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length306
Libraries
Library NameType
Citrus clementina pistils cDNA-AFLP librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14548 contig Ccv1_Contig14548:468..773. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_ARATH (DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP1 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.346e-35
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = -1
Query:   25 DRAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLL 291
            DRAKKGKPPL + SDGK+ R+L P A E+K+AQ +AKIEKMERDM TKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIF KSLL
Sbjct:  811 DRAKKGKPPL-EGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFTKSLL 898          
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_DAUCA (DNA topoisomerase 1 OS=Daucus carota GN=TOP1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.447e-30
Identity = 72/111 (64.86%), Postives = 80/111 (72.07%), Query Frame = -1
Query:   22 RAKKGKPPLMKDSDGKRKRNLAPE----------------------ALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLA 288
            R  KGKPPL K+SDGK KRNL  +                      ++ +K+AQTN KIEKMERD +TKEDLKTVALGTSKINYLDPRITVAWCKRH+VPIEKIFNKSLLA
Sbjct:  667 RVNKGKPPL-KNSDGKPKRNLNLKRYKGKLLKLIQKLRKWSETRRLSVTKKIAQTNTKIEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRHDVPIEKIFNKSLLA 776          
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_DICDI (DNA topoisomerase 1 OS=Dictyostelium discoideum GN=top1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.007e-15
Identity = 41/73 (56.16%), Postives = 55/73 (75.34%), Query Frame = -1
Query:   28 KRNLAPEA---LERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSL 237
            K    P+A   ++ K+A+   +I+K E     K++LKTVALGTSKINYLDPRITVAWCK+++VP++KIF KSL
Sbjct:  806 KSRTLPDAKGKIKEKIAKYEEQIKKQEILKTGKDELKTVALGTSKINYLDPRITVAWCKKNKVPVDKIFTKSL 878          
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_DROME (DNA topoisomerase 1 OS=Drosophila melanogaster GN=Top1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.898e-14
Identity = 32/59 (54.24%), Postives = 49/59 (83.05%), Query Frame = -1
Query:   31 RKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 207
            +++ +   +++K+E     +++ KT+ALGTSK+NYLDPRI+VAWCK+H+VPIEKIFNK+
Sbjct:  896 KQLERLRDQLKKLELQETDRDENKTIALGTSKLNYLDPRISVAWCKKHDVPIEKIFNKT 954          
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_XENLA (DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.421e-14
Identity = 39/90 (43.33%), Postives = 58/90 (64.44%), Query Frame = -1
Query:   13 KKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLANLL 282
            K  K       D K K+ +  E+ ++ + +   ++ K+E     +E+ K +ALGTSK+NYLDPRI+VAWCK++ VPIEKI+NK+   NLL
Sbjct:  722 KSAKADAKVRRDEKTKKLV--ESKKKAVQRIEEQLMKLEVQATDREENKQIALGTSKLNYLDPRISVAWCKKYGVPIEKIYNKTQRKNLL 809          
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_RAT (DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.230e-13
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = -1
Query:   31 RAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 288
            ++ K    +MKD+  K+      +A++R   Q    + K+E     +E+ K +ALGTSK+NYLDPRITVAWCK+  VPIEKI+NK+
Sbjct:  668 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKT 749          
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_MOUSE (DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.230e-13
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = -1
Query:   31 RAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 288
            ++ K    +MKD+  K+      +A++R   Q    + K+E     +E+ K +ALGTSK+NYLDPRITVAWCK+  VPIEKI+NK+
Sbjct:  668 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKT 749          
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_HUMAN (DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.230e-13
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = -1
Query:   31 RAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 288
            ++ K    +MKD+  K+      +A++R   Q    + K+E     +E+ K +ALGTSK+NYLDPRITVAWCK+  VPIEKI+NK+
Sbjct:  666 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKT 747          
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_CRIGR (DNA topoisomerase 1 OS=Cricetulus griseus GN=TOP1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.230e-13
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = -1
Query:   31 RAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 288
            ++ K    +MKD+  K+      +A++R   Q    + K+E     +E+ K +ALGTSK+NYLDPRITVAWCK+  VPIEKI+NK+
Sbjct:  668 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKT 749          
BLAST of GH733292 vs. ExPASy Swiss-Prot
Match: TOP1_CERAE (DNA topoisomerase 1 OS=Cercopithecus aethiops GN=TOP1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.230e-13
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = -1
Query:   31 RAKKGKPPLMKDSDGKRKRNLAPEALERKMAQTNAKIEKMERDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKS 288
            ++ K    +MKD+  K+      +A++R   Q    + K+E     +E+ K +ALGTSK+NYLDPRITVAWCK+  VPIEKI+NK+
Sbjct:  668 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQ----LMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNKT 749          
The following BLAST results are available for this feature:
BLAST of GH733292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
TOP1_ARATH4.346e-3583.15DNA topoisomerase 1 OS=Arabidopsis thaliana GN=TOP... [more]
TOP1_DAUCA1.447e-3064.86DNA topoisomerase 1 OS=Daucus carota GN=TOP1 PE=2 ... [more]
TOP1_DICDI1.007e-1556.16DNA topoisomerase 1 OS=Dictyostelium discoideum GN... [more]
TOP1_DROME1.898e-1454.24DNA topoisomerase 1 OS=Drosophila melanogaster GN=... [more]
TOP1_XENLA9.421e-1443.33DNA topoisomerase 1 OS=Xenopus laevis GN=top1 PE=2... [more]
TOP1_RAT1.230e-1345.35DNA topoisomerase 1 OS=Rattus norvegicus GN=Top1 P... [more]
TOP1_MOUSE1.230e-1345.35DNA topoisomerase 1 OS=Mus musculus GN=Top1 PE=1 S... [more]
TOP1_HUMAN1.230e-1345.35DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1 S... [more]
TOP1_CRIGR1.230e-1345.35DNA topoisomerase 1 OS=Cricetulus griseus GN=TOP1 ... [more]
TOP1_CERAE1.230e-1345.35DNA topoisomerase 1 OS=Cercopithecus aethiops GN=T... [more]

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Properties
Property NameValue
Genbank descriptionU_86 Citrus clementina pistils cDNA-AFLP library Citrus clementina cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>GH733292 ID=GH733292; Name=GH733292; organism=Citrus clementina; type=EST; length=306bp
GTTAATCCTTGCCAACAAATTTGCGAGAAGAGACTTGTTGAATATCTTCT
CAATGGGAACTTCGTGTCGCTTGCACCAAGCAACTGTGATCCTAGGGTCA
AGGTAATTGATCTTGGACGTGCCTAATGCCACGGTTTTCAGATCCTCTTT
GGTCTTCATGTCTCGTTCCATTTTCTCAATCTTTGCATTGGTTTGAGCCA
TCTTCCTCTCCAATGCTTCGGGTGCCAAGTTCCTCTTTCTCTTTCCATCA
GAATCCTTCATCAATGGGGGCTTCCCTTTTTTAGCTCTGTCNAAATNAAC
TCACAA
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