BQ622983

Overview
NameBQ622983
Unique NameBQ622983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11377 contig Csv1_Contig11377:597..1156. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ622983 vs. ExPASy Swiss-Prot
Match: PUB7_ARATH (U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.278e-16
Identity = 60/185 (32.43%), Postives = 93/185 (50.27%), Query Frame = 3
Query:    3 AALLTLSASSVNKPFISASGAIPLLVEILRYGSQ-QAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIALTSXXXXXXXXXXXXXNGSLQAREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQTKARTLLQLLRDSPYPRSE 554
            A  L LS     K  I +S A+P LV++L+   + Q K DA+ AL NLST+  N+  +L +N I S+  LL    ++    EK  +++ +L    EG+    S              G    +E AV  LL +C   R    + +L+EGVIP L+ ++V GTP+ + K++ LL L R+    R +
Sbjct:  532 ALYLNLSCLDEAKSVIGSSQAVPFLVQLLQKEIETQCKLDALHALYNLSTYSPNIPALLSSNIIKSLQGLLASTGENL-WIEKSLAVLLNLASSQEGKDEAVSSQGMISSLATVLDMGDTTEQEQAVSCLLILCNG-RESCIQMVLQEGVIPSLVSISVNGTPRGREKSQKLLMLFREERQQRDQ 714          
BLAST of BQ622983 vs. ExPASy Swiss-Prot
Match: PUB45_ARATH (U-box domain-containing protein 45 OS=Arabidopsis thaliana GN=PUB45 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.075e-15
Identity = 56/179 (31.28%), Postives = 93/179 (51.96%), Query Frame = 3
Query:    3 AALLTLSASSVNKPFISASGAIPLLVEILRYGSQ-QAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIALTSXXXXXXXXXXXXXNGSLQAREHAVGALLTMCQ-SDRCKYREPILREGVIPGLLELTVQGTPKSQTKARTLLQLLRD 533
            A  L LS     KP I +S A+P +V +L   ++ Q K DA+ +L +LST+P N+  +L  + + ++  L I      +  EK  +++ +LV  + G+  + S              G    +E AV  LL +C  S+ C   E +L+EGVIP L+ ++V GT + + +A+ LL L R+
Sbjct:  530 AIYLNLSCLEEAKPVIGSSLAVPFMVNLLWTETEVQCKVDALHSLFHLSTYPPNIPCLLSADLVNALQSLTI--SDEQRWTEKSLAVLLNLVLNEAGKDEMVSAPSLVSNLCTILDTGEPNEQEQAVSLLLILCNHSEICS--EMVLQEGVIPSLVSISVNGTQRGRERAQKLLTLFRE 704          
BLAST of BQ622983 vs. ExPASy Swiss-Prot
Match: PUB4_ARATH (U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.055e-14
Identity = 53/171 (30.99%), Postives = 92/171 (53.80%), Query Frame = 3
Query:    3 AALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIALTSXXXXXXXXXXXXXNGSLQAREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQTKARTL 515
            A L +LS    NK  I  SGAI  LV++L  G+ + K DA  AL NLS H +N ++I+ +  +  ++DL+     ++   +K  +++ +L    EGR A+                GS + +E+A  ALL +  ++  ++   +L+EG +P L+ L+  GTP+++ K +TL
Sbjct:  646 ATLFSLSVIEENKIKIGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLM---DPAAGMVDKAVAVLANLATIPEGRNAIGQEGGIPLLVEVVEL-GSARGKENAAAALLQL-STNSGRFCNMVLQEGAVPPLVALSQSGTPRAREKVQTL 811          
BLAST of BQ622983 vs. ExPASy Swiss-Prot
Match: PUB2_ARATH (U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.055e-14
Identity = 57/176 (32.39%), Postives = 89/176 (50.57%), Query Frame = 3
Query:    3 AALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIALTSXXXXXXXXXXXXXNGSLQAREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQTKARTLLQLLR 530
            A L +LS     K  I  +GAI  LV++L  GS   K DA  AL NLS H +N + ++    +  +V+L+     +    EK   ++ +L    EG+IA+                GS + +E+A  ALL +C +   K+   ++REGVIP L+ LT  GT + + KA+ LL+  +
Sbjct:  527 ATLFSLSVIEEYKTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELM---DPAFGMVEKAVVVLANLATVREGKIAIGEEGGIPVLVEVVEL-GSARGKENATAALLQLC-THSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFK 697          
BLAST of BQ622983 vs. ExPASy Swiss-Prot
Match: PUB6_ARATH (U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.008e-14
Identity = 58/191 (30.37%), Postives = 94/191 (49.21%), Query Frame = 3
Query:    3 AALLTLSASSVNKPFISASGAIPLLVEILRYGSQ-QAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIALTSXXXXXXXXXXXXXNGSLQAREHAVGALLTMCQ-SDRCKYREPILREGVIPGLLELTVQGTPKSQTKARTLLQLL-----RDSPYPRSE 554
            A  L LS     KP I +S A+   V +L   ++ Q K DA+ AL NLST+  N+  +L +N I S+   ++    +    EK  +++ +L    EG+  + +              G    +E AV  L+ +C  S+ C   + +L+EGVIP L+ ++V G+P+ + K++ LL L      RD P P  E
Sbjct:  532 ALYLNLSCLEKAKPVIGSSQAVSFFVNLLLQDTKTQCKLDALHALYNLSTYSPNIPTLLSSNIIKSLQ--VLASTGNHLWIEKSLAVLLNLASSREGKEEMITTQGMISTLATVLDTGDTVEQEQAVSCLVILCTGSESCI--QMVLQEGVIPSLVSISVNGSPRGRDKSQKLLMLFREQRHRDQPSPNKE 718          
BLAST of BQ622983 vs. ExPASy Swiss-Prot
Match: PUB10_ARATH (U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.289e-12
Identity = 56/178 (31.46%), Postives = 88/178 (49.44%), Query Frame = 3
Query:    3 AALLTLSASSVNKPFISASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIALTSXXXXXXXXXXXXXNGSLQAREHAVGALLTMCQSDRCKYREPILREGVIPGLLELTVQGTPKSQTKARTLLQLLRDS 536
            A L +LS +  NK  I ASGAI  LV++L+YGS + K DA  AL NL  +  N    +    +  +V +L     S + A++  +++  L      + A+               +   + RE+A   LL +C+ D  K    I R G +  L+EL+  GT +++ KA +LL+LLR S
Sbjct:  447 ATLFSLSLADENKIIIGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLT-DSSSERMADEALTILSVLASNQVAKTAILRANAIPPLIDCLQKD-QPRNRENAAAILLCLCKRDTEKLIS-IGRLGAVVPLMELSRDGTERAKRKANSLLELLRKS 621          
BLAST of BQ622983 vs. ExPASy Swiss-Prot
Match: PUB17_ARATH (U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.684e-12
Identity = 57/178 (32.02%), Postives = 87/178 (48.88%), Query Frame = 3
Query:    3 AALLTLSASSVNKPFIS-ASGAIPLLVEILRYGSQQAKFDAVMALSNLSTHPDNLSIILGTNPIPSIVDLLIFCKKSSKTAEKCTSLIESLVGFDEGRIALTSXXXXXXXXXXXXXNGSLQAREHAVGALLTMCQSDRCKYREPILREGVIPGLLE-LTVQGTPKSQTKARTLLQLLR 530
            A L +LSA    K  I+     +  L  +L+ G+ + K DAV AL NLSTHPDN S ++    + S+V  L    K+   AE+    +  LV    G  A+                G+ + +E+AV ALL +C+S      E +LR   I GLL+ L   GT +++ KA +L ++ +
Sbjct:  513 ATLFSLSAVHEYKKRIAIVDQCVEALALLLQNGTPRGKKDAVTALYNLSTHPDNCSRMIEGGGVSSLVGAL----KNEGVAEEAAGALALLVRQSLGAEAIGKEDSAVAGLMGMMRCGTPRGKENAVAALLELCRSGGAAVAEKVLRAPAIAGLLQTLLFTGTKRARRKAASLARVFQ 686          
The following BLAST results are available for this feature:
BLAST of BQ622983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PUB7_ARATH3.278e-1632.43U-box domain-containing protein 7 OS=Arabidopsis t... [more]
PUB45_ARATH8.075e-1531.28U-box domain-containing protein 45 OS=Arabidopsis ... [more]
PUB4_ARATH1.055e-1430.99U-box domain-containing protein 4 OS=Arabidopsis t... [more]
PUB2_ARATH1.055e-1432.39U-box domain-containing protein 2 OS=Arabidopsis t... [more]
PUB6_ARATH4.008e-1430.37U-box domain-containing protein 6 OS=Arabidopsis t... [more]
PUB10_ARATH1.289e-1231.46U-box domain-containing protein 10 OS=Arabidopsis ... [more]
PUB17_ARATH1.684e-1232.02U-box domain-containing protein 17 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00074 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00074 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ622983 ID=BQ622983; Name=BQ622983; organism=Citrus sinensis; type=EST; length=560bp
CTGCAGCTTTGCTCACACTATCTGCTTCTTCTGTCAACAAGCCTTTTATA
AGTGCTTCTGGTGCCATCCCTCTCCTTGTGGAAATCCTTAGATATGGTAG
TCAGCAAGCCAAGTTTGATGCCGTAATGGCTCTTTCAAATCTCTCAACGC
ACCCAGATAATCTAAGTATCATCCTTGGAACAAATCCCATCCCTTCTATT
GTTGATTTGCTGATATTCTGTAAGAAGTCTTCAAAAACAGCTGAGAAATG
TACTTCCCTTATAGAATCTTTAGTGGGTTTTGATGAGGGCAGAATTGCAT
TAACATCTGAAGAAGGTGGAGTACTAGCAGTAGTTGAAGTGTTAGAAAAT
GGATCTCTACAAGCTCGGGAGCATGCGGTTGGAGCACTCCTTACGATGTG
TCAGAGTGACCGATGTAAATATAGAGAACCAATTCTTAGAGAAGGTGTGA
TCCCAGGACTCCTTGAGCTTACAGTTCAAGGAACACCCAAGTCTCAGACC
AAAGCACGAACACTTTTGCAGTTACTGAGGGACTCACCATACCCCAGATC
AGAGCTGCAA
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