BQ623230

Overview
NameBQ623230
Unique NameBQ623230
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9755 contig Csv1_Contig9755:181..668. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: PSDE_ARATH (26S proteasome non-ATPase regulatory subunit 14 OS=Arabidopsis thaliana GN=RPN11 PE=2 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 2.717e-89
Identity = 160/162 (98.77%), Postives = 161/162 (99.38%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRK 486
            GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFR INPQT+MLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRK
Sbjct:   47 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRSINPQTIMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRK 208          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: PSDE_MOUSE (26S proteasome non-ATPase regulatory subunit 14 OS=Mus musculus GN=Psmd14 PE=1 SV=2)

HSP 1 Score: 305.834 bits (782), Expect = 6.482e-83
Identity = 149/162 (91.98%), Postives = 154/162 (95.06%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRK 486
            GVPMEVMGLMLGEFVD+YTVRV+DVFAMPQSGTGVSVEAVD VFQ  MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL++RAVAVVVDPIQSVKGKVVIDAFRLIN   M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYRK
Sbjct:   48 GVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRK 209          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: PSDE_HUMAN (26S proteasome non-ATPase regulatory subunit 14 OS=Homo sapiens GN=PSMD14 PE=1 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 6.482e-83
Identity = 149/162 (91.98%), Postives = 154/162 (95.06%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRK 486
            GVPMEVMGLMLGEFVD+YTVRV+DVFAMPQSGTGVSVEAVD VFQ  MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL++RAVAVVVDPIQSVKGKVVIDAFRLIN   M+LG EPRQTTSNLGHLNKPSIQALIHGLNRHYYSI INYRK
Sbjct:   48 GVPMEVMGLMLGEFVDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNLGHLNKPSIQALIHGLNRHYYSITINYRK 209          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: PSDE_DROME (26S proteasome non-ATPase regulatory subunit 14 OS=Drosophila melanogaster GN=Rpn11 PE=1 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 1.444e-82
Identity = 146/162 (90.12%), Postives = 156/162 (96.30%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRK 486
            GVPMEVMGLMLGEFVD+YTV+V+DVFAMPQ+GTGVSVEAVD VFQ  MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL++RAVAVVVDPIQSVKGKVVIDAFRLINP  ++LGQEPRQTTSNLGHL KPS+QALIHGLNRHYYSI+INYRK
Sbjct:   46 GVPMEVMGLMLGEFVDDYTVQVIDVFAMPQTGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINPNMLVLGQEPRQTTSNLGHLQKPSVQALIHGLNRHYYSISINYRK 207          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: RPN11_SCHPO (26S proteasome regulatory subunit rpn11 OS=Schizosaccharomyces pombe GN=rpn11 PE=1 SV=2)

HSP 1 Score: 300.056 bits (767), Expect = 3.557e-81
Identity = 144/162 (88.89%), Postives = 152/162 (93.83%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRK 486
            G PMEVMGLMLGEFVD++TVRVVDVFAMPQSGTGVSVEAVD VFQ NM+DMLKQTGRPEMVVGWYHSHPGFGCWLS VDINTQQSFE L  RAVAVVVDPIQSVKGKVVIDAFRLINP T+M+GQEPRQTTSNLGH+NKPSIQALIHGL RHYYS+ INY+K
Sbjct:   47 GTPMEVMGLMLGEFVDDFTVRVVDVFAMPQSGTGVSVEAVDPVFQKNMMDMLKQTGRPEMVVGWYHSHPGFGCWLSSVDINTQQSFEQLTPRAVAVVVDPIQSVKGKVVIDAFRLINPSTLMMGQEPRQTTSNLGHINKPSIQALIHGLGRHYYSLRINYKK 208          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: PSDE_CAEEL (26S proteasome non-ATPase regulatory subunit 14 OS=Caenorhabditis elegans GN=rpn-11 PE=1 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 1.352e-80
Identity = 146/161 (90.68%), Postives = 150/161 (93.17%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYR 483
            GVPMEVMGLMLGEFVD+YTV V+DVFAMPQSGTGVSVEAVD VFQ  MLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEAL+ RAVAVVVDPIQSVKGKVVIDAFR INPQ+M L QEPRQTTSNLGHL KPSIQALIHGLNRHYYSI I YR
Sbjct:   50 GVPMEVMGLMLGEFVDDYTVNVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALSDRAVAVVVDPIQSVKGKVVIDAFRTINPQSMALNQEPRQTTSNLGHLQKPSIQALIHGLNRHYYSIPIAYR 210          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: RPN11_ASHGO (26S proteasome regulatory subunit RPN11 OS=Ashbya gossypii GN=RPN11 PE=3 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 1.108e-74
Identity = 134/162 (82.72%), Postives = 148/162 (91.36%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRK 486
            GVPMEVMGLMLG+FVDEYTV VVDVFAMPQSGTGVSVEAVD VFQ  M+DMLKQTGR +MVVGWYHSHPGFGCWLS VD++TQ+SFE LN RAVAVVVDPIQSVKGKVVIDAFRLI+P T++  QEPRQTTSN+G LNKP+IQ+LIHGLNRHYYS+ I+Y K
Sbjct:   49 GVPMEVMGLMLGDFVDEYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVDTQRSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLISPATVVRNQEPRQTTSNVGLLNKPNIQSLIHGLNRHYYSLNIDYHK 210          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: RPN11_CANGA (26S proteasome regulatory subunit RPN11 OS=Candida glabrata GN=RPN11 PE=3 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 7.942e-73
Identity = 133/162 (82.10%), Postives = 144/162 (88.89%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRK 486
            GVPMEVMGLMLGEFVDEYTV VVDVFAMPQSGTGVSVEAVD VFQ  M+DMLKQTGR +MVVGWYHSHPGFGCWLS VD+NTQ+SFE LN RAVAVVVDPIQSVKGKVVIDAFRLI+   ++  QEPRQTTSN G +NK +IQALIHGLNRHYYS+ I+Y K
Sbjct:   44 GVPMEVMGLMLGEFVDEYTVNVVDVFAMPQSGTGVSVEAVDDVFQARMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNNRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNQEPRQTTSNSGLMNKANIQALIHGLNRHYYSLNIDYHK 205          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: RPN11_YEAST (26S proteasome regulatory subunit RPN11 OS=Saccharomyces cerevisiae GN=RPN11 PE=1 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 5.148e-72
Identity = 132/162 (81.48%), Postives = 143/162 (88.27%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRK 486
            GVPMEVMGLMLGEFVD+YTV VVDVFAMPQSGTGVSVEAVD VFQ  M+DMLKQTGR +MVVGWYHSHPGFGCWLS VD+NTQ+SFE LN RAVAVVVDPIQSVKGKVVIDAFRLI+   ++   EPRQTTSN G LNK +IQALIHGLNRHYYS+ I+Y K
Sbjct:   44 GVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTGRDQMVVGWYHSHPGFGCWLSSVDVNTQKSFEQLNSRAVAVVVDPIQSVKGKVVIDAFRLIDTGALINNLEPRQTTSNTGLLNKANIQALIHGLNRHYYSLNIDYHK 205          
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Match: PSDE_DICDI (26S proteasome non-ATPase regulatory subunit 14 OS=Dictyostelium discoideum GN=psmD14 PE=3 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 1.656e-70
Identity = 129/162 (79.63%), Postives = 140/162 (86.42%), Query Frame = 1
Query:    1 GVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRK 486
            GVP+EVMGLMLGE +DEYT+RV+DVFAMPQSGT VSVEA+D VFQT MLDMLKQTGR E+V+GWYHSHPGFGCWLS VD+NTQQSFE L  RAVAVVVDP+QSV+GKVVIDAFR I         EPRQ TSNLGHL  PSIQALIHGLNR+YYSIAINYRK
Sbjct:   48 GVPLEVMGLMLGELIDEYTIRVIDVFAMPQSGTSVSVEAIDPVFQTKMLDMLKQTGRDEIVIGWYHSHPGFGCWLSSVDVNTQQSFEQLQSRAVAVVVDPLQSVRGKVVIDAFRTIKTSPT---AEPRQITSNLGHLQDPSIQALIHGLNRNYYSIAINYRK 206          
The following BLAST results are available for this feature:
BLAST of BQ623230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
PSDE_ARATH2.717e-8998.7726S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_MOUSE6.482e-8391.9826S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_HUMAN6.482e-8391.9826S proteasome non-ATPase regulatory subunit 14 OS... [more]
PSDE_DROME1.444e-8290.1226S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_SCHPO3.557e-8188.8926S proteasome regulatory subunit rpn11 OS=Schizos... [more]
PSDE_CAEEL1.352e-8090.6826S proteasome non-ATPase regulatory subunit 14 OS... [more]
RPN11_ASHGO1.108e-7482.7226S proteasome regulatory subunit RPN11 OS=Ashbya ... [more]
RPN11_CANGA7.942e-7382.1026S proteasome regulatory subunit RPN11 OS=Candida... [more]
RPN11_YEAST5.148e-7281.4826S proteasome regulatory subunit RPN11 OS=Sacchar... [more]
PSDE_DICDI1.656e-7079.6326S proteasome non-ATPase regulatory subunit 14 OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00321 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00321 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623230 ID=BQ623230; Name=BQ623230; organism=Citrus sinensis; type=EST; length=488bp
GGTGTGCCCATGGAGGTCATGGGTCTGATGCTGGGAGAGTTTGTGGACGA
GTACACAGTTCGGGTTGTTGATGTGTTTGCTATGCCACAAAGTGGAACTG
GTGTTAGTGTTGAAGCTGTTGATCATGTGTTCCAGACTAACATGCTTGAC
ATGCTCAAGCAGACTGGAAGACCAGAAATGGTTGTTGGATGGTATCACTC
ACATCCTGGATTTGGTTGCTGGCTCTCTGGTGTTGACATAAACACACAGC
AGAGTTTTGAAGCTTTGAATCAAAGGGCTGTTGCTGTGGTTGTGGATCCA
ATCCAGAGCGTGAAAGGGAAGGTAGTGATTGATGCCTTCCGCTTGATTAA
TCCCCAAACCATGATGCTTGGCCAAGAACCACGGCAGACAACTTCCAATC
TTGGTCATCTTAATAAGCCATCCATCCAAGCATTGATCCATGGCTTGAAT
AGACATTATTATTCTATTGCCATCAATTACAGGAAGGA
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